BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017902
         (271 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycin...    86   4e-15
ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycin...    86   4e-15
gb|AFK38034.1| unknown [Lotus japonicus]                               84   9e-15
gb|ABK23892.1| unknown [Picea sitchensis]                              84   9e-15
ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabi...    81   8e-14

>ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycine max]
           gi|255627545|gb|ACU14117.1| unknown [Glycine max]
          Length = 206

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 44/71 (61%), Positives = 53/71 (74%)
 Frame = +3

Query: 57  RDPSSDQIFVFFPDEPKKIGVKIMKACFARMSSENVFRAILVSQKALTPPANQAVKEMSS 236
           +D S DQI+VFFPDEPK +GVK MK    RM+SENV+RAILV+Q  LTP A   + E+SS
Sbjct: 61  KDNSGDQIYVFFPDEPK-VGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISS 119

Query: 237 KFHLEAFVDEE 269
           KFHLE F + E
Sbjct: 120 KFHLEVFQEAE 130


>ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycine max]
           gi|255625665|gb|ACU13177.1| unknown [Glycine max]
          Length = 206

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 44/71 (61%), Positives = 53/71 (74%)
 Frame = +3

Query: 57  RDPSSDQIFVFFPDEPKKIGVKIMKACFARMSSENVFRAILVSQKALTPPANQAVKEMSS 236
           +D S DQI+VFFPDEPK +GVK MK    RM+SENV+RAILV+Q  LTP A   + E+SS
Sbjct: 61  KDNSGDQIYVFFPDEPK-VGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISS 119

Query: 237 KFHLEAFVDEE 269
           KFHLE F + E
Sbjct: 120 KFHLEVFQEAE 130


>gb|AFK38034.1| unknown [Lotus japonicus]
          Length = 206

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 45/71 (63%), Positives = 51/71 (71%)
 Frame = +3

Query: 57  RDPSSDQIFVFFPDEPKKIGVKIMKACFARMSSENVFRAILVSQKALTPPANQAVKEMSS 236
           +D  SDQI+VFFPDEPK +GVK MK    RM+SENVFRAILV Q  LTP A   + EMSS
Sbjct: 61  KDGPSDQIYVFFPDEPK-VGVKTMKTYTNRMNSENVFRAILVCQSNLTPFAKTCISEMSS 119

Query: 237 KFHLEAFVDEE 269
           KF LE F + E
Sbjct: 120 KFQLEVFQEAE 130


>gb|ABK23892.1| unknown [Picea sitchensis]
          Length = 191

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 48/84 (57%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
 Frame = +3

Query: 24  DPAKEDY--EDRLRDPSSDQIFVFFPDEPKKIGVKIMKACFARMSSENVFRAILVSQKAL 197
           DP KED       R+  S+QIFVFFP+E K +GVK +K    RM SE VFRAILV Q+AL
Sbjct: 47  DPKKEDLVINKAKRNSPSEQIFVFFPEEAK-VGVKSIKTYVERMKSEGVFRAILVVQQAL 105

Query: 198 TPPANQAVKEMSSKFHLEAFVDEE 269
           TP A Q+V+E S KFHLE F + E
Sbjct: 106 TPFARQSVQEFSGKFHLEVFQEAE 129


>ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
           gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
           [Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
           polymerase I, II and III 24.3 kDa subunit [Arabidopsis
           thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
           II subunit E [Arabidopsis thaliana]
          Length = 205

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 42/71 (59%), Positives = 52/71 (73%)
 Frame = +3

Query: 57  RDPSSDQIFVFFPDEPKKIGVKIMKACFARMSSENVFRAILVSQKALTPPANQAVKEMSS 236
           R+ +SDQ+++FFPDE K +GVK MK    RM SENVFRAILV Q+ LTP A   + E+SS
Sbjct: 60  RNDNSDQLYIFFPDEAK-VGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISS 118

Query: 237 KFHLEAFVDEE 269
           KFHLE F + E
Sbjct: 119 KFHLEVFQEAE 129