BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017900
         (991 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002305724.1| predicted protein [Populus trichocarpa] gi|2...   299   8e-79
ref|XP_002317391.1| predicted protein [Populus trichocarpa] gi|2...   294   2e-77
gb|ADN34025.1| DNA polymerase III gamma-tau subunit [Cucumis mel...   265   1e-68
ref|XP_003547181.1| PREDICTED: uncharacterized protein LOC100793...   265   2e-68
ref|XP_003593819.1| DNA polymerase III subunit gamma/tau [Medica...   261   2e-67

>ref|XP_002305724.1| predicted protein [Populus trichocarpa] gi|222848688|gb|EEE86235.1|
            predicted protein [Populus trichocarpa]
          Length = 1188

 Score =  299 bits (765), Expect = 8e-79
 Identities = 175/312 (56%), Positives = 207/312 (66%), Gaps = 12/312 (3%)
 Frame = +2

Query: 5    EPLALMSQLATIITDILAGSYVFTKERLRRKFFRRPTLSKDDMEKLRQALKTLSEAEKQL 184
            EPLALMSQLAT+ITDILAGSY FTKER RRKFFRR  LSK+DMEKLRQALKTLSEAEKQL
Sbjct: 720  EPLALMSQLATVITDILAGSYDFTKERPRRKFFRRKPLSKEDMEKLRQALKTLSEAEKQL 779

Query: 185  RTSNDKXXXXXXXXXXXXPDQQYLLPSSSTETSYNHSPPVLPNTSQQDFSRRGTAEHPQM 364
            R SNDK            PDQQYLLPSSSTETS+NHSP    N   +D SR+G  EH +M
Sbjct: 780  RMSNDKLTWLTAALLQLAPDQQYLLPSSSTETSFNHSPLAQNNMGGRDISRKG-GEH-EM 837

Query: 365  SNNERGLL----------ASRTDIRHSGSTHDVLHDENVDRNNNNIGGKKHAGI--TDVT 508
             NN R L            +  D R++GST+    D    RN  ++   +   +  +D  
Sbjct: 838  PNNGRDLPMHVRLESLPGGTSADFRNNGSTNGTSIDRK--RNAASVMAPQWTPVQTSDAI 895

Query: 509  RAGGEHVLRKGHKEIEKIWFAVLEKIQISTLKEFMYQEGKLVFVSFGAAPNVQLTFTSHM 688
            R     V  K HK  E+IW  VLEKIQI++++EF+YQEGKL+ VSFGAAP VQL F+SH 
Sbjct: 896  RVNSRQVSGKSHKGYEEIWLEVLEKIQINSMREFLYQEGKLISVSFGAAPTVQLIFSSHF 955

Query: 689  TTSTAEKYRGYILKAFESVLGSRVTIEIRCESKKAVTVANQDPHVLPASKDGSSQMISNE 868
            T   AEK+R +IL+AFESVLGS VTIEIRCES K  +   + P +LPASK+GSSQM  + 
Sbjct: 956  TKLKAEKFRAHILQAFESVLGSPVTIEIRCESNKETSAGFRVPLILPASKNGSSQMAIDP 1015

Query: 869  VSVTDRRVLRPG 904
            V     R+ R G
Sbjct: 1016 VLNAGSRMPRTG 1027


>ref|XP_002317391.1| predicted protein [Populus trichocarpa] gi|222860456|gb|EEE98003.1|
            predicted protein [Populus trichocarpa]
          Length = 1190

 Score =  294 bits (753), Expect = 2e-77
 Identities = 174/314 (55%), Positives = 204/314 (64%), Gaps = 14/314 (4%)
 Frame = +2

Query: 5    EPLALMSQLATIITDILAGSYVFTKERLRRKFFRRPTLSKDDMEKLRQALKTLSEAEKQL 184
            EPLALMSQLAT+ITDILAGSY FTKER RRKFFRR  LSKDDMEKLRQALKTLSEAEKQL
Sbjct: 724  EPLALMSQLATVITDILAGSYDFTKERPRRKFFRRNPLSKDDMEKLRQALKTLSEAEKQL 783

Query: 185  RTSNDKXXXXXXXXXXXXPDQQYLLPSSSTETSYNHSPPVLPNTSQQDFSRRGTAEHPQM 364
            R SNDK            PDQQYLLPSSSTETS+NHSP  L N   +D +R+G  E  +M
Sbjct: 784  RMSNDKLTWLTAALLQLAPDQQYLLPSSSTETSFNHSPLALNNMGGRDIARKG-GERVEM 842

Query: 365  SNNERGLL----------ASRTDIRHSGSTHDVLHDENVDRNNNNIGGK----KHAGITD 502
             NN+RGL            +  + ++SGST+ +    N+DR  N   G          +D
Sbjct: 843  PNNKRGLSTHVRLENLPGGTSANFQNSGSTNGI----NMDRKRNAASGMASQWTSVQTSD 898

Query: 503  VTRAGGEHVLRKGHKEIEKIWFAVLEKIQISTLKEFMYQEGKLVFVSFGAAPNVQLTFTS 682
              R  G  V  K  K  E+IW  VLEKIQI++++EF+YQEGKL+ VSFGAAP VQL F+S
Sbjct: 899  AVRVNGRQVSGKSRKGHEEIWLEVLEKIQINSMREFLYQEGKLISVSFGAAPTVQLIFSS 958

Query: 683  HMTTSTAEKYRGYILKAFESVLGSRVTIEIRCESKKAVTVANQDPHVLPASKDGSSQMIS 862
            H+T   AEK+R +IL+AFESVLGS VTIEIRCE  K     N   H+  ASK GSSQM  
Sbjct: 959  HLTKLKAEKFRAHILQAFESVLGSPVTIEIRCELNKE---TNAGFHLPAASKIGSSQMAM 1015

Query: 863  NEVSVTDRRVLRPG 904
            +       R+ R G
Sbjct: 1016 DSEPNAGSRMPRTG 1029


>gb|ADN34025.1| DNA polymerase III gamma-tau subunit [Cucumis melo subsp. melo]
          Length = 1170

 Score =  265 bits (678), Expect = 1e-68
 Identities = 157/295 (53%), Positives = 192/295 (65%), Gaps = 11/295 (3%)
 Frame = +2

Query: 5    EPLALMSQLATIITDILAGSYVFTKERLRRKFFRRPTLSKDDMEKLRQALKTLSEAEKQL 184
            EP+ALMSQ+AT+ITDILAGSY F KER RRKFFRR  LSK+DMEKLRQALKTLSEAEKQL
Sbjct: 727  EPMALMSQIATVITDILAGSYDFKKERPRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQL 786

Query: 185  RTSNDKXXXXXXXXXXXXPDQQYLLPSSSTETSYNHSPPVLPNTSQQDFSRRGTAEHPQM 364
            R SNDK            PDQQY+L SSS ETS+NHSP  L N S +  SR    +H Q+
Sbjct: 787  RMSNDKLTWLTAALLQLAPDQQYML-SSSAETSFNHSPLALNNVSGRGASRN-VDQHGQI 844

Query: 365  SNNERGLLASRTDIRHSGSTHDVLHDENVDRNNNNIGGKKHAGI-----------TDVTR 511
            S  E+GL    TD++ +G  H    D  + +  + +  K+H+G+           TD+ +
Sbjct: 845  SAGEKGL---PTDVKFAG--HSDSFDNRISKGIS-LDRKRHSGVCVSPQRTIGTATDLMK 898

Query: 512  AGGEHVLRKGHKEIEKIWFAVLEKIQISTLKEFMYQEGKLVFVSFGAAPNVQLTFTSHMT 691
            + G+ V    HK IE+IW  VL KI+I+++KEF+ QEG L  VSFGAAP V+L F SH  
Sbjct: 899  SSGKQVSGTTHKAIEEIWLEVLGKIRINSIKEFLIQEGTLASVSFGAAPTVRLIFNSHNA 958

Query: 692  TSTAEKYRGYILKAFESVLGSRVTIEIRCESKKAVTVANQDPHVLPASKDGSSQM 856
             S AEK R  IL+AFES LGS V IEIRCESK+  TV N     LP SK+G  Q+
Sbjct: 959  KSKAEKLREQILQAFESALGSSVIIEIRCESKRDTTVGNHSSVTLPVSKNGLLQI 1013


>ref|XP_003547181.1| PREDICTED: uncharacterized protein LOC100793832 [Glycine max]
          Length = 1191

 Score =  265 bits (676), Expect = 2e-68
 Identities = 159/331 (48%), Positives = 209/331 (63%), Gaps = 19/331 (5%)
 Frame = +2

Query: 5    EPLALMSQLATIITDILAGSYVFTKERLRRKFFRRPTLSKDDMEKLRQALKTLSEAEKQL 184
            EPLALMSQLAT+ITDILAG+Y F K+R RRKFFRRP LSK+DMEKLRQALKTLSEAEKQL
Sbjct: 728  EPLALMSQLATVITDILAGTYDFRKDRRRRKFFRRPLLSKEDMEKLRQALKTLSEAEKQL 787

Query: 185  RTSNDKXXXXXXXXXXXXPDQQYLLPSSSTETSYNHSPPVLPNTSQQDFSRRGTAEHPQM 364
            R SNDK            PDQQY+LP+SS + S+NHSP  L +   ++ +R  T     +
Sbjct: 788  RMSNDKLTWLTAALLQLAPDQQYVLPTSS-DNSFNHSPFALKDADAREAARL-TGNPVDI 845

Query: 365  SNNERGL-LASRTDIRHSGSTHD-VLHDENVDRNNNNIGG--KKHAG--ITDVTRAGGEH 526
             N  R L + +R +  H+GS+ D +      ++  +++ G   +HA    T+  R     
Sbjct: 846  PNKGRRLSMDARIENVHAGSSADGMTRGLGSEKKRHSVSGFTPQHANSQATEKIRMSERQ 905

Query: 527  VLRKGHKEIEKIWFAVLEKIQISTLKEFMYQEGKLVFVSFGAAPNVQLTFTSHMTTSTAE 706
            +L     +IE+IW  VLE+IQI+ LKEF+++EGKL+ VSFGAAP VQL F+S +T STAE
Sbjct: 906  ILGINRTKIEEIWLEVLERIQITGLKEFLFKEGKLISVSFGAAPTVQLMFSSQLTKSTAE 965

Query: 707  KYRGYILKAFESVLGSRVTIEIRCESKKAVTVANQDPHVLPASKDGSSQM---------- 856
            K+RG+IL+AFESVLGS +TIEIRCE  K    A Q P  LP++ D SSQ+          
Sbjct: 966  KFRGHILQAFESVLGSSITIEIRCELNKDTASAVQQPLTLPSTNDSSSQIRDFNGVGTLA 1025

Query: 857  ---ISNEVSVTDRRVLRPGYDNVSQKASKDR 940
               +++ V      ++      V QK SK +
Sbjct: 1026 HPSVTDSVEKRRGEIVEEAASQVEQKNSKQQ 1056


>ref|XP_003593819.1| DNA polymerase III subunit gamma/tau [Medicago truncatula]
            gi|355482867|gb|AES64070.1| DNA polymerase III subunit
            gamma/tau [Medicago truncatula]
          Length = 1177

 Score =  261 bits (667), Expect = 2e-67
 Identities = 153/296 (51%), Positives = 192/296 (64%), Gaps = 1/296 (0%)
 Frame = +2

Query: 5    EPLALMSQLATIITDILAGSYVFTKERLRRKFFRRPTLSKDDMEKLRQALKTLSEAEKQL 184
            EPLALMSQLAT+ITDILAG+Y FTKER RRKFFRR  LSK+DMEKLRQALKTLSEAEKQL
Sbjct: 735  EPLALMSQLATVITDILAGTYDFTKERCRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQL 794

Query: 185  RTSNDKXXXXXXXXXXXXPDQQYLLPSSSTETSYNHSPPVLPNTSQQDFSRRGTAEHPQM 364
            R SNDK            PDQQY LP+SS + S+NHSP  L N + ++ +R        +
Sbjct: 795  RMSNDKLTWLTAALLQLAPDQQYGLPTSS-DNSFNHSPFALNNGNVKEATRNTGNPVEIL 853

Query: 365  SNNERGLLASRTDIRHSGSTHDVLHDENVDRNNNNIGGKKHAGITDVTRAGGEHVLRKGH 544
            +   R  + +R +  ++GS+ D  H  +     +      ++  TD TR        +  
Sbjct: 854  NRTRRMSMDARMESSNAGSSADRRHSLSGYAPQHT-----YSHSTDKTRINERQTSDRNR 908

Query: 545  KEIEKIWFAVLEKIQISTLKEFMYQEGKLVFVSFGAAPNVQLTFTSHMTTSTAEKYRGYI 724
            KEI++IW  VLE+I    LKEF+Y+ GKL+F+SFGAAP VQL F S ++ STAEK+ G+I
Sbjct: 909  KEIDEIWLEVLERIHYPGLKEFLYKAGKLIFISFGAAPTVQLMFNSQLSKSTAEKFTGHI 968

Query: 725  LKAFESVLGSRVTIEIRCESKKAVTVANQDPHVLPASKDGSSQMIS-NEVSVTDRR 889
            L+AFESVLGS VTIEIRCE+ K      Q P VLP+  DGSSQ+   N+V    RR
Sbjct: 969  LQAFESVLGSSVTIEIRCEANKDAGSPVQLPLVLPSINDGSSQVRDLNDVGTEKRR 1024