BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017862
         (503 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containi...   171   7e-41
ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containi...   169   2e-40
emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]   168   4e-40
emb|CBI41008.3| unnamed protein product [Vitis vinifera]              168   5e-40
ref|XP_002518586.1| pentatricopeptide repeat-containing protein,...   152   4e-35

>ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial [Vitis vinifera]
          Length = 383

 Score =  171 bits (432), Expect = 7e-41
 Identities = 77/133 (57%), Positives = 106/133 (79%)
 Frame = +3

Query: 105 MKTIVNNLFKQKKYTQLVTDFKKSAESSRFRAKHRVYEDTIRRLASAKRFKLIEEILEDH 284
           ++++  ++++++   +LV  FKKS+E  RFR K  +YE+T+RRLASAKRF+ IEEILE+ 
Sbjct: 26  LESVFKDIYRERNLKRLVQKFKKSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQ 85

Query: 285 KKYNDITKEGFAIRLISLYGKAGMLEHAVKTFDELPELKCDRTVKSFNAILSACVESKNY 464
           KKY DI++EGFA+RLISLYGK+GM +HA K FDE+P+ KC+R+V SFNA+L ACV SK +
Sbjct: 86  KKYKDISREGFAVRLISLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKF 145

Query: 465 DKVESMFREMPKK 503
           DKVE  F E+P K
Sbjct: 146 DKVEGFFSELPSK 158


>ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial-like [Vitis vinifera]
          Length = 382

 Score =  169 bits (429), Expect = 2e-40
 Identities = 76/133 (57%), Positives = 106/133 (79%)
 Frame = +3

Query: 105 MKTIVNNLFKQKKYTQLVTDFKKSAESSRFRAKHRVYEDTIRRLASAKRFKLIEEILEDH 284
           ++++  ++++++   +LV  FKKS+E  RFR K  +YE+T+RRLASAKRF+ IEEILE+ 
Sbjct: 26  LESVFKDIYRERNLKRLVQKFKKSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQ 85

Query: 285 KKYNDITKEGFAIRLISLYGKAGMLEHAVKTFDELPELKCDRTVKSFNAILSACVESKNY 464
           KKY DI++EGFA+RLI+LYGK+GM +HA K FDE+P+ KC+R+V SFNA+L ACV SK +
Sbjct: 86  KKYKDISREGFAVRLITLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVNSKKF 145

Query: 465 DKVESMFREMPKK 503
           DKVE  F E+P K
Sbjct: 146 DKVEGFFSELPSK 158


>emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]
          Length = 383

 Score =  168 bits (426), Expect = 4e-40
 Identities = 76/133 (57%), Positives = 105/133 (78%)
 Frame = +3

Query: 105 MKTIVNNLFKQKKYTQLVTDFKKSAESSRFRAKHRVYEDTIRRLASAKRFKLIEEILEDH 284
           ++++  ++++++   +LV  FKKS+E  RFR K  +YE+T+RRLASAKRF+ IEEILE+ 
Sbjct: 26  LESVFKDIYRERNLKRLVQKFKKSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQ 85

Query: 285 KKYNDITKEGFAIRLISLYGKAGMLEHAVKTFDELPELKCDRTVKSFNAILSACVESKNY 464
           KKY DI++EGFA+RLISLYGK+GM +HA K FDE+P+ KC+R+V SFN +L ACV SK +
Sbjct: 86  KKYKDISREGFAVRLISLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNXLLGACVXSKKF 145

Query: 465 DKVESMFREMPKK 503
           DKVE  F E+P K
Sbjct: 146 DKVEGFFSELPSK 158


>emb|CBI41008.3| unnamed protein product [Vitis vinifera]
          Length = 379

 Score =  168 bits (425), Expect = 5e-40
 Identities = 74/131 (56%), Positives = 106/131 (80%)
 Frame = +3

Query: 105 MKTIVNNLFKQKKYTQLVTDFKKSAESSRFRAKHRVYEDTIRRLASAKRFKLIEEILEDH 284
           ++++  ++++++   +LV  FKKS+E  RFR K  +YE+T+RRLASAKRF+ IEEILE+ 
Sbjct: 34  LESVFKDIYRERNLKRLVQKFKKSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQ 93

Query: 285 KKYNDITKEGFAIRLISLYGKAGMLEHAVKTFDELPELKCDRTVKSFNAILSACVESKNY 464
           KKY DI++EGFA+RLISLYGK+GM +HA K FDE+P+ KC+R+V SFNA+L ACV SK +
Sbjct: 94  KKYKDISREGFAVRLISLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKF 153

Query: 465 DKVESMFREMP 497
           DK++  F+E+P
Sbjct: 154 DKIDGFFQELP 164


>ref|XP_002518586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542431|gb|EEF43973.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 377

 Score =  152 bits (383), Expect = 4e-35
 Identities = 73/129 (56%), Positives = 97/129 (75%)
 Frame = +3

Query: 117 VNNLFKQKKYTQLVTDFKKSAESSRFRAKHRVYEDTIRRLASAKRFKLIEEILEDHKKYN 296
           V  L+K++   +LV  FKK +E+ RFR K  +YE+TIRRLA AKRF  IEEILED KKY 
Sbjct: 29  VKVLYKERNLKRLVEKFKKFSENDRFRTKTGIYEETIRRLAIAKRFNWIEEILEDQKKYK 88

Query: 297 DITKEGFAIRLISLYGKAGMLEHAVKTFDELPELKCDRTVKSFNAILSACVESKNYDKVE 476
           DI KEG+  RLI LYGK+ M +++ K FDE+P+  C RTV SFNA+L+ACV SK +D+V+
Sbjct: 89  DIHKEGYNARLIRLYGKSNMFDNSRKVFDEMPDRNCKRTVVSFNALLAACVTSKKFDEVD 148

Query: 477 SMFREMPKK 503
            +FR++PK+
Sbjct: 149 GLFRKLPKE 157