BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017854
         (1490 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...   165   3e-38
ref|XP_002510608.1| conserved hypothetical protein [Ricinus comm...   154   4e-35
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...   153   1e-34
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]   152   2e-34
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2...   150   6e-34

>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
            gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
            putative [Ricinus communis]
          Length = 398

 Score =  165 bits (418), Expect = 3e-38
 Identities = 134/415 (32%), Positives = 189/415 (45%), Gaps = 19/415 (4%)
 Frame = +1

Query: 250  WSELLCDLAHEIQERLAL-DDLIRFSSVCSSWNFLSGSFLRH-KGRLPWLIVPYYVDPNV 423
            WS+L  +L   I + L +  D +   +VC +W F       H   +LPWL++P       
Sbjct: 5    WSQLPPELIEIISKGLTIYSDYLYSRAVCHAWRFSIPKTPNHLPPQLPWLMLP------- 57

Query: 424  GRDPNYCSDGILGFFSILDGLTYKLEIPELVGR-RICGTAFGWFITVHGNSEMQLLHPFT 600
             +  +  +     FFS+     + L +PE+  R R CG++ GW + +     + L++P T
Sbjct: 58   -QSQSQSNQSRRAFFSLSTNKFHFLNLPEVSYRKRHCGSSHGWLMILDDTPTILLINPLT 116

Query: 601  RKVVQLPALTEFPYSVGTRFSEEKGLLYQLQERLDDTEDTYEVNSDYMRDFHIYKAVTSP 780
            R  + LP L+ FP  +   +S+  G  Y L+  L +      V+   MRD  I K V S 
Sbjct: 117  RAKLSLPPLSSFPNVISFNYSDI-GREYALRNLLGER---VTVSLRQMRDSFIRKVVLSS 172

Query: 781  GLTNSSQPTVVIAIPMLYRQLYFCRPGKDSKWKRVIGKTVIYSDVTLYKGDFYAVRHTGE 960
                 +   VVIAI      L +CR G D  W  V        DV    G FYAV   G+
Sbjct: 173  SPLKDNN-FVVIAILNQTDDLAYCRNG-DKSWSLVENARSFCEDVIFVNGMFYAVNKAGQ 230

Query: 961  VDVVKNLDDADGSSVPTTSFVISATKDYDVNAENNYLVESSNELLLVIRIL--------A 1116
            + +     D+     P  SF+ +  +      +  YLV S +ELLLV R L         
Sbjct: 231  IVICDISSDS-----PRVSFMETPRQ---AGGDMQYLVNSGDELLLVTRYLDLEYEFDHP 282

Query: 1117 DFEGKSYRFTRKFVVIKLDFSGPNWVEVKDLGDCALFVGFNNSFSVVASDFTGCKRNCIY 1296
            D E      T +F V +LD++GP W+ +  LGD ALF+G N+S S+ A+DF+GC  NCIY
Sbjct: 283  DMEPHLIYRTIRFEVFRLDWNGPQWLRMSTLGDKALFIGENSSLSLSATDFSGCMGNCIY 342

Query: 1297 XXXXXXXXXXTG----HDKGIFYLDTCTIEKICPIDSKFVSP----RPLWYSINP 1437
                       G    HD GIF L   TIE +      F SP     PLW S NP
Sbjct: 343  YTDDYLDANYDGHFGDHDLGIFKLCDETIEPLPCYPRNFTSPLQWSPPLWVSPNP 397


>ref|XP_002510608.1| conserved hypothetical protein [Ricinus communis]
            gi|223551309|gb|EEF52795.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 406

 Score =  154 bits (390), Expect = 4e-35
 Identities = 129/440 (29%), Positives = 203/440 (46%), Gaps = 42/440 (9%)
 Frame = +1

Query: 244  SGWSELLCDLAHEI-QERLALDDLIRFSSVCSSWNFLSGSFLRHKG-----RLPWLIVPY 405
            S WSEL  +L   I Q++    D I   +VC SW     S +  K      +LPWL++PY
Sbjct: 2    SNWSELPQELLQTITQKQSNYVDYISTRAVCKSW----WSAIPKKPHDLLCQLPWLLLPY 57

Query: 406  YVDPNVGRDPNYCSDGILGFFSILDGLTYKLEIPELVGRRICGTAFGWFITVHGNSEMQL 585
            + +     +PN+      GF+++ DG TY LE+PE + +R CG++ GW + V     + L
Sbjct: 58   HKN-----NPNH-----RGFYNLADGKTYHLELPETIEKRCCGSSHGWLVMVEDTPSIFL 107

Query: 586  LHPFTRKVVQLPALTEFPYSVGTRFSEEKGLLYQLQERLDDTEDTYEVNSDYMRDFHIYK 765
            L+P T+  ++LP+L+ FPY     F  E  ++Y+    +++  +T       +R+ +I K
Sbjct: 108  LNPLTKARIELPSLSTFPY-----FPTE--VVYENSRNINEYFNTKA--KLRIRETYIRK 158

Query: 766  AVTS--PGLTNSSQPTVVIAIPMLYRQLYFCRPGKDSKWKRV--IGKTVIYSDVTLYKGD 933
            A+ S  P   N +   +   I      + FC+ G D+ W  +    + + Y DV  ++G 
Sbjct: 159  AIVSEDPSTGNFAVMAIYKTINST-ENIAFCKSG-DATWFTIQETSQKIHYQDVMFHRGK 216

Query: 934  FYAVRHTGEVDVVKNLDDADGSSV-----PTTSFVISATKDYDVNAENNYLVESSNELLL 1098
            FYAV   G V +   + D +  SV     P     +   K +       YL     +L+L
Sbjct: 217  FYAVDDKGRVSIC--ITDINPPSVIQVADPPPVPPLMGYKQW-------YLASLDEDLIL 267

Query: 1099 VIRILADFEGKSYRF-TRKFVVIKLDFSGPNWVEVKDLGDCALFVGFNNSFSVVASDFTG 1275
              R    + G  Y + T KF+V KLD S  NW+E+  LGD   F+G+N   S+   ++  
Sbjct: 268  AGR-FRKYRGSGYEYQTHKFMVYKLDASSSNWLELDGLGDMLSFLGWNCFHSISTQNYRN 326

Query: 1276 CKRNCIY----XXXXXXXXXXTGHDKGIFYLDTCTIEKI--------CPI---------- 1389
               NCIY               GHD GIF LD  +++++         PI          
Sbjct: 327  YSGNCIYFTDDKFIVGSDFPWEGHDYGIFNLDDKSVQRLGLPSYPIKLPILPFIYGYERS 386

Query: 1390 ----DSKFVSPRPLWYSINP 1437
                 S F+ P P+W +INP
Sbjct: 387  LKRDRSSFILPPPIWVTINP 406


>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score =  153 bits (387), Expect = 1e-34
 Identities = 135/410 (32%), Positives = 181/410 (44%), Gaps = 14/410 (3%)
 Frame = +1

Query: 250  WSELLCDLAHEIQERLAL-DDLIRFSSVCSSWNFLSGSFLRH-KGRLPWLIVPYYVDPNV 423
            WS+L  +L   I ++  +  D +RF +VC +W         H   +LPWL++P     + 
Sbjct: 4    WSQLHPELLDFIAKKFKIYTDYVRFRAVCHNWRASVPKTPHHLPTQLPWLMLPQSQPHHT 63

Query: 424  GRDPNYCSDGILGFFSILDGLTYKLEIPELVGRRIC-GTAFGWFITVHGNSEMQLLHPFT 600
             R           FFS+     + L++PE   RR   G++ GW + +    E+ LL+P T
Sbjct: 64   HRP----------FFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNPLT 113

Query: 601  RKVVQLPALTEFPYSVGTRFSEEKGLLYQLQERLDDTEDTYEVNSDYMRDFHIYKAVTSP 780
            R  V LP L+ FP  V   F++  G  Y L+     + D Y  +   MRD  I K + S 
Sbjct: 114  RSKVHLPPLSTFPNVVRFNFADV-GREYALRT---SSGDVYTRSLKKMRDSFIKKTILSS 169

Query: 781  GLTNSSQPTVVIAIPMLYRQLYFCRPGKDSKWKRVIGKTVIYSDVTLYKGDFYAVRHTGE 960
               N S    V+ +      L  CR   DS W  +        DV  ++G FYAV   G 
Sbjct: 170  SPANGSDFIAVVILNQT-GDLALCRKSDDS-WTFLEDAQSYAEDVIFHRGLFYAVNKYGS 227

Query: 961  VDVVKNLDDADGSSVPTTSFVISATKDYDVNAENNYLVESSNELLLVIRIL-------AD 1119
            + V     D  GSS P  S +           +  YLVES  ELLLV R L        D
Sbjct: 228  IAVC----DVSGSS-PRVSII---EMPQQFGGDLQYLVESGEELLLVTRYLDLTYDVEPD 279

Query: 1120 FEGKSYRFTRKFVVIKLDFSGPNWVEVKDLGDCALFVGFNNSFSVVASDFTGCKRNCIYX 1299
                 YR TR F V +LD   P W  V  LGD ALF+G N S S+ + DF GCK NCIY 
Sbjct: 280  QTSLIYRTTR-FQVCRLDLKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYY 338

Query: 1300 XXXXXXXXXTG----HDKGIFYLDTCTIEKICPIDSKFVSPRPLWYSINP 1437
                      G     D GIF L+  +IE +     +   P PLW + NP
Sbjct: 339  TDDYSEDNYDGIGGEQDLGIFNLEDGSIEPLPCSHFRIRWPPPLWVTPNP 388


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score =  152 bits (385), Expect = 2e-34
 Identities = 135/410 (32%), Positives = 181/410 (44%), Gaps = 14/410 (3%)
 Frame = +1

Query: 250  WSELLCDLAHEIQERLAL-DDLIRFSSVCSSWNFLSGSFLRH-KGRLPWLIVPYYVDPNV 423
            WS+L  +L   I ++  +  D +RF +VC +W         H   +LPWL++P     + 
Sbjct: 4    WSQLHPELLDFIAKKFKIYTDYVRFRAVCHNWRASVPKTPHHLPTQLPWLMLPQSQPHHT 63

Query: 424  GRDPNYCSDGILGFFSILDGLTYKLEIPELVGRRIC-GTAFGWFITVHGNSEMQLLHPFT 600
             R           FFS+     + L++PE   RR   G++ GW + +    E+ LL+P T
Sbjct: 64   HRP----------FFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNPLT 113

Query: 601  RKVVQLPALTEFPYSVGTRFSEEKGLLYQLQERLDDTEDTYEVNSDYMRDFHIYKAVTSP 780
            R  V LP L+ FP  V   F++  G  Y L+     + D Y  +   MRD  I K + S 
Sbjct: 114  RSKVHLPPLSTFPNVVRFNFADV-GREYALRT---SSGDVYTRSLKKMRDSFIKKTILSS 169

Query: 781  GLTNSSQPTVVIAIPMLYRQLYFCRPGKDSKWKRVIGKTVIYSDVTLYKGDFYAVRHTGE 960
               N S    V+ +      L  CR   DS W  +        DV  ++G FYAV   G 
Sbjct: 170  SPANGSDFIAVVILNQT-GDLALCRKSDDS-WTFLEDAQSYSEDVIFHRGLFYAVNKYGS 227

Query: 961  VDVVKNLDDADGSSVPTTSFVISATKDYDVNAENNYLVESSNELLLVIRIL-------AD 1119
            + V     D  GSS P  S +           +  YLVES  ELLLV R L        D
Sbjct: 228  IAVC----DVSGSS-PRVSII---EMPQQFGGDLQYLVESGEELLLVTRYLDLTYDVEXD 279

Query: 1120 FEGKSYRFTRKFVVIKLDFSGPNWVEVKDLGDCALFVGFNNSFSVVASDFTGCKRNCIYX 1299
                 YR TR F V +LD   P W  V  LGD ALF+G N S S+ + DF GCK NCIY 
Sbjct: 280  QTSLIYRTTR-FQVCRLDSKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYY 338

Query: 1300 XXXXXXXXXTG----HDKGIFYLDTCTIEKICPIDSKFVSPRPLWYSINP 1437
                      G     D GIF L+  +IE +     +   P PLW + NP
Sbjct: 339  TDDYSEDNYDGIGGEQDLGIFNLEDGSIEPLPCSHFRIRWPPPLWVTPNP 388


>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
            predicted protein [Populus trichocarpa]
          Length = 393

 Score =  150 bits (380), Expect = 6e-34
 Identities = 125/411 (30%), Positives = 192/411 (46%), Gaps = 15/411 (3%)
 Frame = +1

Query: 250  WSELLCDLAHEIQERLAL-DDLIRFSSVCSSWNFLSGSFLRH-KGRLPWLIVPYYVDPNV 423
            W++L  +L   I +++ +  D + F +VC +W         H   +LPWL++P     + 
Sbjct: 5    WTQLPPELIEIISKKITIYSDYLHFQAVCHAWKSSIPKTPNHLPPQLPWLLLPQ----SQ 60

Query: 424  GRDPNYCSDGILGFFSILDGLTYKLEIPELVGRRI-CGTAFGWFITVHGNSEMQLLHPFT 600
                +Y +     FF++     + L +PE   R+  CG++ GW I +  +  + +++P T
Sbjct: 61   SNQSSYRA-----FFNLSTYKFHSLNLPEASHRKKHCGSSHGWLIILDDSPSILVINPLT 115

Query: 601  RKVVQLPALTEFPYSVGTRFSEEKGLLYQLQERLDDTEDTYEVNSDYMRDFHIYKAVTSP 780
            R+ + LPA++ FP  V   ++   G  Y L   ++   +    +   MRD  I K V S 
Sbjct: 116  RRKIHLPAISSFPNVVSFDYANV-GREYLL---VNPQGERNTASLRQMRDGFIKKVVMSS 171

Query: 781  G-LTNSSQPTVVIAIPMLYRQLYFCRPGKDSKWKRVIGKTVIYSDVTLYKGDFYAVRHTG 957
              L       V +AI      L +C+ G D  W  V        DV  + G FYAV   G
Sbjct: 172  SPLEKKGDFFVAMAILCSTGDLAYCKNG-DECWNIVENSRSFSEDVIYFNGLFYAVNKAG 230

Query: 958  EVDVVKNLDDADGSSVPTTSFVISATKDYDVNAENNYLVESSNELLLVIRIL---ADFEG 1128
            ++ V     D +G+S P  SF+ +  +   +  +  YLV S + LLLV R L    +F+ 
Sbjct: 231  QIVVC----DVNGNS-PKVSFIETPRQ---IGGDMQYLVSSGDGLLLVTRYLDLDVEFDI 282

Query: 1129 KSYRFTRKFVVIKLDFSGPNWVEVKDLGDCALFVGFNNSFSVVASDFTGCKRNCIYXXXX 1308
              Y+ T +F V KLD +GP W  V  LGD  LF+G N+S ++ AS  +GC  +CIY    
Sbjct: 283  FIYK-TARFEVFKLDLNGPRWERVTSLGDMMLFIGENSSLALSASGLSGCMGDCIYYTDD 341

Query: 1309 XXXXXXTG----HDKGIFYLDTCTIEKICPID----SKFVSPRPLWYSINP 1437
                   G    HD GIF L   +IE +        S+   P PLW S NP
Sbjct: 342  YSANNYDGHIGEHDLGIFKLSDGSIEPLPCYPRNSYSRLQWPPPLWISPNP 392