BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017852
         (2385 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containi...   558   e-156
ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containi...   554   e-155
ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containi...   552   e-154
ref|XP_002326124.1| predicted protein [Populus trichocarpa] gi|2...   537   e-150
ref|XP_002512275.1| pentatricopeptide repeat-containing protein,...   533   e-149

>ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like
            [Vitis vinifera]
          Length = 641

 Score =  558 bits (1437), Expect = e-156
 Identities = 284/489 (58%), Positives = 363/489 (74%), Gaps = 4/489 (0%)
 Frame = -1

Query: 2373 SCLGYFETSLRSPLIAFEVIKRLNDPILSLKYFEYSRMRFEEQGFKHSGNTYNLLVRNLC 2194
            +CL YF  +L +P IAFEV++ LN+P L+LK+F+ SR+        HS  TY+ L+R+L 
Sbjct: 93   ACLDYFSKTL-TPSIAFEVVRGLNNPELALKFFQLSRVNLN---LCHSFRTYSFLLRSLS 148

Query: 2193 HVGLHDAALKVI----FDGHFAESSILDFLVSSCGENGKFDIAKRVFVQAYNSKMRVSSF 2026
             +G H++A  V      DGH  ++S+L FLVSS  + GKF+IA+      +   +  S  
Sbjct: 149  EMGFHESAKAVYDCMNIDGHSPDASVLGFLVSSATDAGKFNIAR-----TWVDGVEFSLV 203

Query: 2025 TYNCLLNILVKRNRVDEAVSFFREQHLRFGFCPDTCSFNIVIRGLCRIGDVGRAFEFFKD 1846
             YN LLN LV+ N+VDEAV FFREQ    G   D+CSFNI+IRGLCRIG V +AFE F +
Sbjct: 204  VYNKLLNQLVRGNQVDEAVCFFREQMGLHGPF-DSCSFNILIRGLCRIGKVDKAFELFNE 262

Query: 1845 MESFHCSPDVVTYNTIINGLFRAKEIDRGRQVLKEMQLQNGLSPDVVTYTSVISGYCKLG 1666
            M  F CSPDV+TYNT+ING  R  E+DRG  +LKE+  +N LSPDVVTYTS+ISGYCKLG
Sbjct: 263  MRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLG 322

Query: 1665 RMDDASAVYDEMIDLGIRPNLFTYNVLIDGFGKTGDMGSAVAVYDRMLVMGYHPDVVTLS 1486
            +M+ AS +++ MI  GI+PN FT+N+LI+GFGK GDM SA  +Y+ ML++G  PD++T +
Sbjct: 323  KMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFT 382

Query: 1485 SLIDGFCRTGKVDEAMKLWHDMGKRKVSPNAYTFAILINSFCKENRLSEARDFLRQLKLK 1306
            SLIDG CRTGKV+ ++KLWH++  R +SPN YTFAIL N+ CKENRL EAR FLR LK +
Sbjct: 383  SLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWR 442

Query: 1305 VIVPQAFMYNPVIDGFCKAGNVDEANVIMTEMEENRCNPDKLTYTILIIGHCMKGRMLEA 1126
             IV Q FMYNPVIDGFCKAGNVDEANVI+ EMEE RC PDK+TYTILIIGHCMKGR+ EA
Sbjct: 443  HIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEA 502

Query: 1125 VSIFNKMLTSGCAPDDITVNSLRSCLLKAGMPNEAKQITLTVLNKDFDLNMPSSRKVQPL 946
            +SIFN+ML +GCAPD IT+ SL SCLLKAGMPNEA +I + + ++DF+L + S ++  PL
Sbjct: 503  ISIFNRMLGTGCAPDSITMTSLISCLLKAGMPNEAYRI-MQIASEDFNLGLKSLKRNVPL 561

Query: 945  RQNMNVSVA 919
            R N ++ VA
Sbjct: 562  RTNTDIPVA 570


>ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like
            [Cucumis sativus]
          Length = 548

 Score =  554 bits (1427), Expect = e-155
 Identities = 284/492 (57%), Positives = 363/492 (73%), Gaps = 6/492 (1%)
 Frame = -1

Query: 2373 SCLGYFETSLRSPLIAFEVIKRLNDPILSLKYFEYSRMRFEEQGFKHSGNTYNLLVRNLC 2194
            +C GY   +L +P IAFEVIKR +DP+L LK+FE+SR         H+ NTY+LL+RNLC
Sbjct: 65   ACFGYLSRNL-NPSIAFEVIKRFSDPLLGLKFFEFSRTHLS---INHTFNTYDLLMRNLC 120

Query: 2193 HVGLHDAALKVIFD-----GHFAESSILDFLVSSCGENGKFDIAKRVFVQAYNSKMRVSS 2029
             VGL+D+A K++FD     G   +SSIL+ LVSS    GK D AK    + +   ++VS 
Sbjct: 121  KVGLNDSA-KIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSP 179

Query: 2028 FTYNCLLNILVKRNRVDEAVSFFREQHLRFGFCPDTCSFNIVIRGLCRIGDVGRAFEFFK 1849
            F YN LLN+LVK+N VDEAV  FRE HL   F PD  SFNI+IRGLCRIG++ +AFEFF+
Sbjct: 180  FVYNNLLNMLVKQNLVDEAVLLFRE-HLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQ 238

Query: 1848 DMESFHCSPDVVTYNTIINGLFRAKEIDRGRQVLKEMQLQNGLSPDVVTYTSVISGYCKL 1669
            +M +F C PD+V+YNT+ING  R  EI +G  +LKE  L  G+SPDV+TYTS+ISGYCKL
Sbjct: 239  NMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKL 298

Query: 1668 GRMDDASAVYDEMIDLGIRPNLFTYNVLIDGFGKTGDMGSAVAVYDRMLVMGYHPDVVTL 1489
            G M  AS ++DEM+  GI+PN FT+NVLIDGFGK G+M SA+ +Y++ML++G  PDVVT 
Sbjct: 299  GDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTF 358

Query: 1488 SSLIDGFCRTGKVDEAMKLWHDMGKRKVSPNAYTFAILINSFCKENRLSEARDFLRQLKL 1309
            +SLIDG+CR G+V++ +KLW +M  R +SPN YT+A+LIN+ CKENR+ EAR+FLR LK 
Sbjct: 359  TSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKS 418

Query: 1308 KVIVPQAFMYNPVIDGFCKAGNVDEANVIMTEMEENRCNPDKLTYTILIIGHCMKGRMLE 1129
              +VP+ F+YNPVIDGFCKAG VDEAN I+ EM+E +C PDK+T+TILIIG+CMKGRM+E
Sbjct: 419  SEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVE 478

Query: 1128 AVSIFNKMLTSGCAPDDITVNSLRSCLLKAGMPNEAKQITLTVLNKDFDLNMPSSRKVQP 949
            A+S F KM+   C PD+IT+NSL SCLLKAGMPNEA QI    L K   LN+  S    P
Sbjct: 479  AISTFYKMIEINCVPDEITINSLISCLLKAGMPNEASQIKQAALQK---LNLGLSSLGSP 535

Query: 948  L-RQNMNVSVAV 916
            L R++  V VAV
Sbjct: 536  LTRKSSRVPVAV 547


>ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like
            [Cucumis sativus]
          Length = 548

 Score =  552 bits (1423), Expect = e-154
 Identities = 283/492 (57%), Positives = 362/492 (73%), Gaps = 6/492 (1%)
 Frame = -1

Query: 2373 SCLGYFETSLRSPLIAFEVIKRLNDPILSLKYFEYSRMRFEEQGFKHSGNTYNLLVRNLC 2194
            +C GY   +L +P IAFEVIKR +DP+L LK+FE+SR         H+ NTY+LL+RNLC
Sbjct: 65   ACFGYLSRNL-NPSIAFEVIKRFSDPLLGLKFFEFSRTHLS---INHTFNTYDLLMRNLC 120

Query: 2193 HVGLHDAALKVIFD-----GHFAESSILDFLVSSCGENGKFDIAKRVFVQAYNSKMRVSS 2029
             VGL+D+A K++FD     G   +SSIL+ LVSS    GK D AK    + +   ++VS 
Sbjct: 121  KVGLNDSA-KIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSP 179

Query: 2028 FTYNCLLNILVKRNRVDEAVSFFREQHLRFGFCPDTCSFNIVIRGLCRIGDVGRAFEFFK 1849
            F YN LLN+LVK+N VDEAV  FRE HL   F PD  SFNI+IRGLCRIG++ +AFEFF+
Sbjct: 180  FVYNNLLNMLVKQNLVDEAVLLFRE-HLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQ 238

Query: 1848 DMESFHCSPDVVTYNTIINGLFRAKEIDRGRQVLKEMQLQNGLSPDVVTYTSVISGYCKL 1669
            +M +F C PD+V+YNT+ING  R  EI +G  +LKE  L  G+SPDV+TYTS+ISGYCKL
Sbjct: 239  NMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKL 298

Query: 1668 GRMDDASAVYDEMIDLGIRPNLFTYNVLIDGFGKTGDMGSAVAVYDRMLVMGYHPDVVTL 1489
            G M  AS ++DEM+  GI+PN FT+NVLIDGFGK G+M SA+ +Y++ML++G  PDVVT 
Sbjct: 299  GDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTF 358

Query: 1488 SSLIDGFCRTGKVDEAMKLWHDMGKRKVSPNAYTFAILINSFCKENRLSEARDFLRQLKL 1309
            +SLIDG+CR G+V++ +KLW +M  R +SPN YT+A+LIN+ CKENR+ EAR+FLR LK 
Sbjct: 359  TSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKS 418

Query: 1308 KVIVPQAFMYNPVIDGFCKAGNVDEANVIMTEMEENRCNPDKLTYTILIIGHCMKGRMLE 1129
              +VP+ F+YNPVIDGFCKAG VDEAN I+ EM+E +C PDK+T+TILIIG+CMKGRM+E
Sbjct: 419  SEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVE 478

Query: 1128 AVSIFNKMLTSGCAPDDITVNSLRSCLLKAGMPNEAKQITLTVLNKDFDLNMPSSRKVQP 949
            A+S F KM+   C PD+IT+NSL SCLLKAGMPNEA QI    L K   LN+  S    P
Sbjct: 479  AISTFYKMIEINCVPDEITINSLISCLLKAGMPNEASQIKQAALQK---LNLGLSSLGSP 535

Query: 948  L-RQNMNVSVAV 916
            L R++  V  AV
Sbjct: 536  LTRKSSRVPAAV 547


>ref|XP_002326124.1| predicted protein [Populus trichocarpa] gi|222833317|gb|EEE71794.1|
            predicted protein [Populus trichocarpa]
          Length = 512

 Score =  537 bits (1383), Expect = e-150
 Identities = 267/480 (55%), Positives = 355/480 (73%), Gaps = 5/480 (1%)
 Frame = -1

Query: 2340 SPLIAFEVIKRLNDPILSLKYFEYSRMRFEEQGFKHSGNTYNLLVRNLCHVGLHDAALKV 2161
            +PLIAFEVIKR N+P +  K+ E+SR+        H  +TYNLL+R+LC +G HD  + +
Sbjct: 39   TPLIAFEVIKRFNNPKVGFKFLEFSRLNLN---VNHCYSTYNLLMRSLCQMGHHDL-VNI 94

Query: 2160 IFD-----GHFAESSILDFLVSSCGENGKFDIAKRVFVQAYNSKMRVSSFTYNCLLNILV 1996
            +FD     GH  +S +L FLV+   +   FD+ K++  +    ++R++SF YN LL++LV
Sbjct: 95   VFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEVQGKEVRINSFVYNNLLSVLV 154

Query: 1995 KRNRVDEAVSFFREQHLRFGFCPDTCSFNIVIRGLCRIGDVGRAFEFFKDMESFHCSPDV 1816
            K+N+V EA+  F+E +L     PDT +FNI+IRGLCR+G V RAFE FKDMESF C PDV
Sbjct: 155  KQNQVHEAIYLFKE-YLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDV 213

Query: 1815 VTYNTIINGLFRAKEIDRGRQVLKEMQLQNGLSPDVVTYTSVISGYCKLGRMDDASAVYD 1636
            VTYNT+INGL +A E+ RG ++ KE+Q ++  SPD+VTYTS+ISG+CK G+M +AS +++
Sbjct: 214  VTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFE 273

Query: 1635 EMIDLGIRPNLFTYNVLIDGFGKTGDMGSAVAVYDRMLVMGYHPDVVTLSSLIDGFCRTG 1456
            EM+  GI+PN+ T+NVLIDGFGK G++  A A+Y +M       DVVT +SLIDG+CR G
Sbjct: 274  EMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAG 333

Query: 1455 KVDEAMKLWHDMGKRKVSPNAYTFAILINSFCKENRLSEARDFLRQLKLKVIVPQAFMYN 1276
            +V+  +K W+ M  R VSP  YT+A+LIN+ CKENRL+EARDFL Q+K   I+P+ FMYN
Sbjct: 334  QVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYN 393

Query: 1275 PVIDGFCKAGNVDEANVIMTEMEENRCNPDKLTYTILIIGHCMKGRMLEAVSIFNKMLTS 1096
            PVIDGFCKAGNVDE NVI+ EMEE RC+PDK+T+TILIIGHC+KGRM EA++IFN+ML +
Sbjct: 394  PVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLAT 453

Query: 1095 GCAPDDITVNSLRSCLLKAGMPNEAKQITLTVLNKDFDLNMPSSRKVQPLRQNMNVSVAV 916
             CAPD+ITVNSL SCLLKAGMPNEA +I    L +D +L + S  K  PLR N ++ VAV
Sbjct: 454  RCAPDNITVNSLISCLLKAGMPNEAYRIRKMAL-EDRNLGLSSFEKAIPLRTNTDIPVAV 512


>ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223548236|gb|EEF49727.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 532

 Score =  533 bits (1374), Expect = e-149
 Identities = 269/492 (54%), Positives = 358/492 (72%), Gaps = 5/492 (1%)
 Frame = -1

Query: 2379 DFSCLGYFETSLRSPLIAFEVIKRLND-PILSLKYFEYSRMRFEEQGFKHSGNTYNLLVR 2203
            D + LGY    L  PL+AFEVIKRLN+ P + LK+ E+ R+ F      H  +TY LL+R
Sbjct: 45   DATSLGYLSEKLNDPLVAFEVIKRLNNNPQVGLKFMEFCRLNFS---LIHCFSTYELLIR 101

Query: 2202 NLCHVGLHDAALKVI----FDGHFAESSILDFLVSSCGENGKFDIAKRVFVQAYNSKMRV 2035
            +LC +GLHD    VI     DGH  +S +L FLV+S  + GKFD+AK++ ++    + R+
Sbjct: 102  SLCQMGLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIEVQGEEARI 161

Query: 2034 SSFTYNCLLNILVKRNRVDEAVSFFREQHLRFGFCPDTCSFNIVIRGLCRIGDVGRAFEF 1855
            SSF YN LLN LVK  +V EA+  F+E +L F   P+T +FNI+IRGLCR+G+V + FE 
Sbjct: 162  SSFVYNYLLNELVKGGKVHEAIFLFKE-NLAFHSPPNTWTFNILIRGLCRVGEVEKGFEL 220

Query: 1854 FKDMESFHCSPDVVTYNTIINGLFRAKEIDRGRQVLKEMQLQNGLSPDVVTYTSVISGYC 1675
            F  M+SF C PDVVTYNT+I+GL +A E+DR   +LKE+Q +N  SPDV+TYTS+ISG+ 
Sbjct: 221  FNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFR 280

Query: 1674 KLGRMDDASAVYDEMIDLGIRPNLFTYNVLIDGFGKTGDMGSAVAVYDRMLVMGYHPDVV 1495
            KLG+++ AS +++EMI  GI P + T+NVLIDGFGK G+M +A A++++M      PDVV
Sbjct: 281  KLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVV 340

Query: 1494 TLSSLIDGFCRTGKVDEAMKLWHDMGKRKVSPNAYTFAILINSFCKENRLSEARDFLRQL 1315
            T +SLIDG+CRTG +   +K+W  M  R VSPN YT++++IN+ CK+NR+ EARD LRQL
Sbjct: 341  TFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQL 400

Query: 1314 KLKVIVPQAFMYNPVIDGFCKAGNVDEANVIMTEMEENRCNPDKLTYTILIIGHCMKGRM 1135
            K   + P+ F+YNPVIDGFCKAGNVDEANVI+TEMEE RC PDK+T+TILIIGHCMKGRM
Sbjct: 401  KCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRM 460

Query: 1134 LEAVSIFNKMLTSGCAPDDITVNSLRSCLLKAGMPNEAKQITLTVLNKDFDLNMPSSRKV 955
            +EA+ IF KML  GCAPD+IT++SL +CLLKAG P+EA  I  T  ++D +L+  S RK 
Sbjct: 461  VEALDIFKKMLAIGCAPDNITISSLVACLLKAGKPSEAFHIVQTA-SEDLNLSFSSLRKT 519

Query: 954  QPLRQNMNVSVA 919
             P+R   ++SVA
Sbjct: 520  FPMRVKTDISVA 531