BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017708
         (966 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group...    67   5e-09
gb|AAP54692.2| retrotransposon protein, putative, unclassified [...    64   4e-08
gb|AAO00713.1| retrotransposon protein, putative, unclassified [...    64   4e-08
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    63   9e-08
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga...    61   5e-07

>gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group]
           gi|54291856|gb|AAV32224.1| hypothetical protein [Oryza
           sativa Japonica Group]
          Length = 1936

 Score = 67.4 bits (163), Expect = 5e-09
 Identities = 40/127 (31%), Positives = 63/127 (49%)
 Frame = +2

Query: 284 MTIYAWNCWGIGSTTSIQHLKYQIGVMEVDIVCLSETKIGSRRISTVSKMLKFGGCFSVP 463
           M+  AWNC G+G+T ++Q L+  I      +V L ET+    ++S + + L F G   V 
Sbjct: 636 MSCLAWNCRGLGNTATVQDLRALIQKAGSQLVFLCETRQSVEKMSRLRRKLAFRGFVGVS 695

Query: 464 AEGLSGGLAILWKEDVDLEILGATKNQVTRKLDGLVLVVWHGMM*ESWWEQLVGDSELRI 643
           +EG SGGLA+ W E V +++    K    R +D  V +       E  W       E R+
Sbjct: 696 SEGKSGGLALYWDESVSVDVKDINK----RYIDAYVRL----SPDEPQWHITFVYGEPRV 747

Query: 644 QQKHKWW 664
           + +H+ W
Sbjct: 748 ENRHRMW 754


>gb|AAP54692.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1585

 Score = 63.9 bits (154), Expect(2) = 4e-08
 Identities = 39/127 (30%), Positives = 61/127 (48%)
 Frame = +2

Query: 284 MTIYAWNCWGIGSTTSIQHLKYQIGVMEVDIVCLSETKIGSRRISTVSKMLKFGGCFSVP 463
           M   +WNC GIG+ T++Q L   +       V L ET+    +I  +   L   G   V 
Sbjct: 462 MNCLSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGFAGVS 521

Query: 464 AEGLSGGLAILWKEDVDLEILGATKNQVTRKLDGLVLVVWHGMM*ESWWEQLVGDSELRI 643
           ++G+SGGLA+ W E V +EIL    N+  R +D  + +  +    +  W       E R+
Sbjct: 522 SDGMSGGLALFWHESVHVEIL----NKNERFIDAYIRLSPN----DPLWHATFVYGEPRV 573

Query: 644 QQKHKWW 664
           + +HK W
Sbjct: 574 ENRHKMW 580



 Score = 20.4 bits (41), Expect(2) = 4e-08
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 739 VIKVFNGGVCSFVHFCNKP 795
           VI  FN  +  F HF  KP
Sbjct: 596 VIGDFNEALWQFEHFSRKP 614


>gb|AAO00713.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1557

 Score = 63.9 bits (154), Expect(2) = 4e-08
 Identities = 39/127 (30%), Positives = 61/127 (48%)
 Frame = +2

Query: 284 MTIYAWNCWGIGSTTSIQHLKYQIGVMEVDIVCLSETKIGSRRISTVSKMLKFGGCFSVP 463
           M   +WNC GIG+ T++Q L   +       V L ET+    +I  +   L   G   V 
Sbjct: 434 MNCLSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGFAGVS 493

Query: 464 AEGLSGGLAILWKEDVDLEILGATKNQVTRKLDGLVLVVWHGMM*ESWWEQLVGDSELRI 643
           ++G+SGGLA+ W E V +EIL    N+  R +D  + +  +    +  W       E R+
Sbjct: 494 SDGMSGGLALFWHESVHVEIL----NKNERFIDAYIRLSPN----DPLWHATFVYGEPRV 545

Query: 644 QQKHKWW 664
           + +HK W
Sbjct: 546 ENRHKMW 552



 Score = 20.4 bits (41), Expect(2) = 4e-08
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 739 VIKVFNGGVCSFVHFCNKP 795
           VI  FN  +  F HF  KP
Sbjct: 568 VIGDFNEALWQFEHFSRKP 586


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score = 63.2 bits (152), Expect = 9e-08
 Identities = 33/97 (34%), Positives = 56/97 (57%)
 Frame = +2

Query: 284 MTIYAWNCWGIGSTTSIQHLKYQIGVMEVDIVCLSETKIGSRRISTVSKMLKFGGCFSVP 463
           M I +WNC G+G+T +++HL+   G+   +++ L ETK     +  V   L F    +V 
Sbjct: 1   MRILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVE 60

Query: 464 AEGLSGGLAILWKEDVDLEILGATKNQVTRKLDGLVL 574
             G SGGLA++WK+ V +++L + K    R +D L++
Sbjct: 61  PIGKSGGLALMWKDSVQIKVLQSDK----RLIDALLI 93


>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 60.8 bits (146), Expect = 5e-07
 Identities = 33/133 (24%), Positives = 60/133 (45%)
 Frame = +2

Query: 284 MTIYAWNCWGIGSTTSIQHLKYQIGVMEVDIVCLSETKIGSRRISTVSKMLKFGGCFSVP 463
           M I  WNC G+G+  +++ L+        DI+ LSET I       +   L F   F V 
Sbjct: 1   MNILCWNCRGVGNPRTVRQLRKWSTFYAPDIMFLSETMINKTESEALKSRLGFANAFGVS 60

Query: 464 AEGLSGGLAILWKEDVDLEILGATKNQVTRKLDGLVLVVWHGMM*ESWWEQLVGDSELRI 643
           + G +GGL + W+E++   ++  +++ +   +D      W  +    W ++         
Sbjct: 61  SRGRAGGLCVFWREELSFSLVSFSQHHICGDIDD-GAKKWRFVGIYGWAKE--------E 111

Query: 644 QQKHKWWLQRWQC 682
           ++ H W L R+ C
Sbjct: 112 EKHHTWSLMRFLC 124