BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017615
         (380 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002516308.1| pentatricopeptide repeat-containing protein,...   180   1e-43
ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containi...   173   1e-41
ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containi...   160   1e-37
ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containi...   156   2e-36
ref|XP_003602633.1| Pentatricopeptide repeat-containing protein ...   151   5e-35

>ref|XP_002516308.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544538|gb|EEF46055.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 599

 Score =  180 bits (456), Expect = 1e-43
 Identities = 83/124 (66%), Positives = 103/124 (83%)
 Frame = +2

Query: 2   MPVKNAVSWTALIAGLVQNGHGNMALDFFVRMQDNGFSPTAYTFVSVLSACADLALIERG 181
           MPVKN VSWT+LIAG  +NGH   AL+ F++MQ+    P+A+TFV+VL ACADLALIERG
Sbjct: 191 MPVKNTVSWTSLIAGFAKNGHSYKALELFLQMQEENVLPSAFTFVTVLGACADLALIERG 250

Query: 182 KQVHGYIIRSSVGRNLLNVFMFNALIDMYTKCGDMKSATILFEGMPEKDVISWNSLVTGF 361
           KQ+HG+IIRSS   +L N++++NALIDMY KCGDMKS+  LFEGM EKD++SWNSL+TG 
Sbjct: 251 KQIHGHIIRSSGRTDLFNMYVYNALIDMYCKCGDMKSSKSLFEGMSEKDIVSWNSLITGL 310

Query: 362 AQNG 373
           AQNG
Sbjct: 311 AQNG 314



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 44/124 (35%), Positives = 66/124 (53%)
 Frame = +2

Query: 5   PVKNAVSWTALIAGLVQNGHGNMALDFFVRMQDNGFSPTAYTFVSVLSACADLALIERGK 184
           P+KN  SW  +I G  + G  + A D F +M +    P   ++ S++S   DL      +
Sbjct: 69  PIKNIHSWNTMIGGYARVGLFDNARDLFDKMPE----PNLISYNSLISGSLDLL-----R 119

Query: 185 QVHGYIIRSSVGRNLLNVFMFNALIDMYTKCGDMKSATILFEGMPEKDVISWNSLVTGFA 364
           QVHG  I   +     NV ++NALID Y KCG   ++  +F  M E+DV+SW S+V  +A
Sbjct: 120 QVHGAAILIGLE---FNVIVYNALIDSYGKCGQHNTSYCIFSRMFERDVVSWTSMVDAYA 176

Query: 365 QNGR 376
           +  R
Sbjct: 177 RASR 180


>ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  173 bits (439), Expect = 1e-41
 Identities = 82/126 (65%), Positives = 99/126 (78%)
 Frame = +2

Query: 2   MPVKNAVSWTALIAGLVQNGHGNMALDFFVRMQDNGFSPTAYTFVSVLSACADLALIERG 181
           M  KN VSWTALIAG  QNG G+ AL  F +M++ G  P+A+TF SVLSACADLALI RG
Sbjct: 240 MQEKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARG 299

Query: 182 KQVHGYIIRSSVGRNLLNVFMFNALIDMYTKCGDMKSATILFEGMPEKDVISWNSLVTGF 361
           K++HG+IIRS+      N+F+ NALIDMY KCG M+SAT LF+GM EKD++SWNSL+TGF
Sbjct: 300 KEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGF 359

Query: 362 AQNGRG 379
           AQNG G
Sbjct: 360 AQNGHG 365



 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 51/127 (40%), Positives = 73/127 (57%), Gaps = 2/127 (1%)
 Frame = +2

Query: 2   MPVKNAVSWTALIAGLVQNGHGNMALDFFVRM--QDNGFSPTAYTFVSVLSACADLALIE 175
           MP  N VS+ +LI+GL  +G    +L+ F  M  Q +      +T VS++ +CA L   E
Sbjct: 106 MPKPNLVSYNSLISGLGHHGFRKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPE 165

Query: 176 RGKQVHGYIIRSSVGRNLLNVFMFNALIDMYTKCGDMKSATILFEGMPEKDVISWNSLVT 355
             +QVHG  I   +G N  N+ + NALID Y KCG+   +  +F  MPE+DV+SW S+V 
Sbjct: 166 LLRQVHGAAI--IIGLNS-NIIIGNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVA 222

Query: 356 GFAQNGR 376
            +AQ  R
Sbjct: 223 AYAQASR 229



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 25/90 (27%), Positives = 52/90 (57%)
 Frame = +2

Query: 104 NGFSPTAYTFVSVLSACADLALIERGKQVHGYIIRSSVGRNLLNVFMFNALIDMYTKCGD 283
           +   P    + S++S C     ++ GK +H + I++++   +   F+ N LID Y+KC  
Sbjct: 8   SSLDPAHQHYSSLISKCITTRHLKLGKLLHSHFIKTAL---IFTTFLANRLIDFYSKCDS 64

Query: 284 MKSATILFEGMPEKDVISWNSLVTGFAQNG 373
           ++SA  +F  +P K+  SWN +++ ++++G
Sbjct: 65  IQSAHKVFHVLPVKNTHSWNIIISAYSRSG 94



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 26/63 (41%), Positives = 35/63 (55%)
 Frame = +2

Query: 2   MPVKNAVSWTALIAGLVQNGHGNMALDFFVRMQDNGFSPTAYTFVSVLSACADLALIERG 181
           M  K+ VSW +LI G  QNGHG  +L  F RM +    P   TF+ +LSAC    L+  G
Sbjct: 344 MHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEG 403

Query: 182 KQV 190
            ++
Sbjct: 404 LRI 406


>ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 737

 Score =  160 bits (405), Expect = 1e-37
 Identities = 79/126 (62%), Positives = 93/126 (73%)
 Frame = +2

Query: 2   MPVKNAVSWTALIAGLVQNGHGNMALDFFVRMQDNGFSPTAYTFVSVLSACADLALIERG 181
           MPVKN VSWTAL+ G V+NG  + A D F +M + G  P+A TFVSV+ ACA  ALI RG
Sbjct: 194 MPVKNTVSWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALIGRG 253

Query: 182 KQVHGYIIRSSVGRNLLNVFMFNALIDMYTKCGDMKSATILFEGMPEKDVISWNSLVTGF 361
           KQVHG IIR     NL NV++ NALIDMY KCGDMKSA  LFE  P +DV++WN+L+TGF
Sbjct: 254 KQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAPMRDVVTWNTLITGF 313

Query: 362 AQNGRG 379
           AQNG G
Sbjct: 314 AQNGHG 319



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 27/83 (32%), Positives = 49/83 (59%)
 Frame = +2

Query: 125 YTFVSVLSACADLALIERGKQVHGYIIRSSVGRNLLNVFMFNALIDMYTKCGDMKSATIL 304
           Y+F+  +S C     ++    VHG++I++++     + F+ N LID Y+KCG  +SA   
Sbjct: 13  YSFL--ISKCITARRVKLANAVHGHLIKTAL---FFDAFLANGLIDAYSKCGCEESAHKT 67

Query: 305 FEGMPEKDVISWNSLVTGFAQNG 373
           F  +P K   SWN+L++ +++ G
Sbjct: 68  FGDLPNKTTRSWNTLISFYSKTG 90


>ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
           gi|449526377|ref|XP_004170190.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 577

 Score =  156 bits (394), Expect = 2e-36
 Identities = 78/126 (61%), Positives = 96/126 (76%)
 Frame = +2

Query: 2   MPVKNAVSWTALIAGLVQNGHGNMALDFFVRMQDNGFSPTAYTFVSVLSACADLALIERG 181
           MPVKN  +WTALI  LV+N + N ALD F +M +   SP A+TFV VLSACADLALI +G
Sbjct: 237 MPVKNVHTWTALINALVKNKYSNEALDLFQQMLEEKTSPNAFTFVGVLSACADLALIAKG 296

Query: 182 KQVHGYIIRSSVGRNLLNVFMFNALIDMYTKCGDMKSATILFEGMPEKDVISWNSLVTGF 361
           K++HG IIR S   N  NV++ NALID+Y+K GD+KSA +LF  + EKDV+SWNSL+TGF
Sbjct: 297 KEIHGLIIRRSSELNFPNVYVCNALIDLYSKSGDVKSARMLFNLILEKDVVSWNSLITGF 356

Query: 362 AQNGRG 379
           AQNG G
Sbjct: 357 AQNGLG 362



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
 Frame = +2

Query: 2   MPVKNAVSWTALIAGLVQNGHGNMALDFFVRMQDNG--FSPTAYTFVSVLSACADLALIE 175
           MP  N VS+  LI+    +G    +++ F +MQ +    +    T VS+   CA L  +E
Sbjct: 103 MPHPNIVSYNTLISSFTHHGLYVESMNIFRQMQQDFDLLALDEITLVSIAGTCACLGALE 162

Query: 176 RGKQVHGYIIRSSVGRNLLNVFMFNALIDMYTKCGDMKSATILFEGMPEKDVISWNSLVT 355
             +QVHG  I   +  N++   + NA++D Y KCGD  ++  +F  M E+DV++W S+V 
Sbjct: 163 FLRQVHGAAIVIGLEFNMI---VCNAIVDAYGKCGDPDASYSIFSRMKERDVVTWTSMVV 219

Query: 356 GFAQNGR 376
            + Q  R
Sbjct: 220 AYNQTSR 226


>ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355491681|gb|AES72884.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  151 bits (382), Expect = 5e-35
 Identities = 81/127 (63%), Positives = 91/127 (71%), Gaps = 1/127 (0%)
 Frame = +2

Query: 2   MPVKNAVSWTALIAGLVQNGHGNMALDFFVRMQDNGFSPTAYTFVSVLSACADLALIERG 181
           MPVK  VSW ALI+G V+NG    AL+ F +M   G  P A TFVSVL ACA  ALI RG
Sbjct: 304 MPVKYTVSWAALISGFVKNGRCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRG 363

Query: 182 KQVHGYIIRSSVGRNLLNVFMFNALIDMYTKCGDMKSATILFEGMPE-KDVISWNSLVTG 358
           KQVH  IIR     NL NV++FNAL+DMY KCGDMKSA  LFE M   KDV+SWN+L+TG
Sbjct: 364 KQVHCQIIRGRSSDNLFNVYVFNALMDMYAKCGDMKSAENLFEMMIHVKDVVSWNTLITG 423

Query: 359 FAQNGRG 379
           FAQNGRG
Sbjct: 424 FAQNGRG 430



 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 49/127 (38%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
 Frame = +2

Query: 2   MPVKNAVSWTALIAGLVQNGHGNMALDFFVRMQDN--GFSPTAYTFVSVLSACADLALIE 175
           MP +N VS+ +LI+GL ++     A+ FF  MQ+   G     +T VS++S C+ L  ++
Sbjct: 170 MPQRNLVSYNSLISGLTRHEFHKEAVKFFREMQNGVGGLMLDEFTLVSLVSNCSCLDTVK 229

Query: 176 RGKQVHGYIIRSSVGRNLLNVFMFNALIDMYTKCGDMKSATILFEGMPEKDVISWNSLVT 355
             +QVHG  + + VG    N+ + NALID Y KCG+  S+  LF  M EKD +SW S+V 
Sbjct: 230 WLRQVHG--VATIVGFRT-NLILNNALIDAYGKCGEPNSSFCLFRSMVEKDAVSWTSMVV 286

Query: 356 GFAQNGR 376
            + +  R
Sbjct: 287 TYTRASR 293



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 30/95 (31%), Positives = 53/95 (55%)
 Frame = +2

Query: 89  VRMQDNGFSPTAYTFVSVLSACADLALIERGKQVHGYIIRSSVGRNLLNVFMFNALIDMY 268
           V    N FS T   F S++S C     ++ GK +H  +I++++       F+ N LID+Y
Sbjct: 67  VMFHTNDFSSTIEKFSSLISNCVSAKSLKHGKALHSQLIKTAL---FFETFLANGLIDLY 123

Query: 269 TKCGDMKSATILFEGMPEKDVISWNSLVTGFAQNG 373
           +KCG  +S    F+ +P K   +WN+L++ +++ G
Sbjct: 124 SKCGCKESIHKAFDDLPNKTTRTWNTLLSFYSKKG 158



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
 Frame = +2

Query: 8   VKNAVSWTALIAGLVQNGHGNMALDFFVRMQDNGFSPTAYTFVSVLSACADLALIERGKQ 187
           VK+ VSW  LI G  QNG G  +L  F RM ++   P   TF+ VLSAC    L+  G +
Sbjct: 411 VKDVVSWNTLITGFAQNGRGEDSLAVFDRMIESNIEPNHVTFLGVLSACNHAGLVNAGLE 470

Query: 188 VHGYIIRSSVGRNLLNVFMFNALIDMYTKCGDMKSATILFEGMPEK---DVISWNSLVTG 358
           +   + R    +   N +    LID+  +   ++ A  L E +P +    +  W +++ G
Sbjct: 471 LLDSMERRYGVKPKSNHYAL--LIDLLGRKNRLEEAMCLIEKVPNEISNHIAMWGAVLGG 528

Query: 359 FAQNG 373
              +G
Sbjct: 529 CRVHG 533