BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017560
         (449 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                  45   8e-06

>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score = 45.4 bits (106), Expect(2) = 8e-06
 Identities = 19/41 (46%), Positives = 29/41 (70%)
 Frame = -3

Query: 357 SKVRDKHLQHLELILDVLHTEKLYF*LNKCYLLVDSVSFLG 235
           SK + +HL+HLE++  +L  +KLY  L KC  +V+ V+FLG
Sbjct: 776 SKTKGEHLKHLEVVFKILREQKLYGKLEKCTFMVEEVAFLG 816



 Score = 28.9 bits (63), Expect(2) = 8e-06
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = -2

Query: 448 FALSNASFTFTRLMTEILQ 392
           F LSNA  TF RLMTE+L+
Sbjct: 740 FGLSNAPSTFMRLMTEVLR 758