BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017532
         (560 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thalia...    60   3e-07

>ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
           protein [Arabidopsis thaliana]
           gi|332643482|gb|AEE77003.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 343

 Score = 59.7 bits (143), Expect = 3e-07
 Identities = 34/127 (26%), Positives = 70/127 (55%)
 Frame = +1

Query: 43  IQMFL*KLYMQILPMGDVLAERRLKGDFSCPFCLKELELAEYLFFTCEWVRTVWFGSHVS 222
           I+ FL KL    L  GD L  R ++    C  C +E E +++LFF C + + VW  S + 
Sbjct: 27  IKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQQVWRASGIP 86

Query: 223 MRMHKAQQISLRERIDLILAWCCSSDTELRLVGTHIVVLIQQIWQARNYLKFENRKANRE 402
            +  +   I++  +++L+L+  C ++ + +L    I +L  ++W++RN L F+ +  + +
Sbjct: 87  HQELRTTGITMETKMELLLS-SCLANRQPQLFNLAIWIL-WRLWKSRNQLVFQQKSISWQ 144

Query: 403 RLIRQSR 423
             ++++R
Sbjct: 145 NTLQRAR 151