BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017436
         (909 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat...   338   8e-91
emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]   335   1e-89
ref|XP_002307160.1| predicted protein [Populus trichocarpa] gi|2...   323   4e-86
ref|XP_002534039.1| pentatricopeptide repeat-containing protein,...   306   4e-81
ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat...   290   3e-76

>ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g08310, mitochondrial [Vitis vinifera]
            gi|296085293|emb|CBI29025.3| unnamed protein product
            [Vitis vinifera]
          Length = 854

 Score =  338 bits (868), Expect = 8e-91
 Identities = 173/306 (56%), Positives = 222/306 (72%), Gaps = 5/306 (1%)
 Frame = +3

Query: 3    RILISSFCLVGDFVTVNNLLEEGVEGLDVGAIVLLYNAVLDGLVSCGLAYKAYLLIRAMM 182
            +IL        + V +  L+EE +E LD  A++LLYN+VL+GLV+     KAY L+RAM 
Sbjct: 374  QILSKLIAYCSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLRAMT 433

Query: 183  GTECVD-----EAVMFKGKVSPNNASFVIVIDGLCKTEKLDEALILYRGMIQMGCERNVL 347
            G    D     +  M K  V P+  SF IVIDGLC T KLD AL L+R M+++GC++NVL
Sbjct: 434  GDNYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVL 493

Query: 348  LYNNVIEALCNSDRLEESFEILGEMKESGLRPTEFTHNCIFGCLCRRESVMALLDLMKEM 527
            LYNN+I+ L NS+RLEE + +L EMK SG RPT+FTHN IFGCLCRRE V   LD+++EM
Sbjct: 494  LYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREM 553

Query: 528  RVCGHEPWIKHSSGLIKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREV 707
            RV GHEPWIKH + L+KQLC R  + +AC+FLA+M REGFLPDI+AYSAAIDG  KI+ V
Sbjct: 554  RVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAV 613

Query: 708  DRAMKLFHDISSSGHGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSM 887
            D+A+++F DI + G+ PDVVAYN +I+G CK  RV EA  + +EM+ KGL+PSVVTYN +
Sbjct: 614  DQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLL 673

Query: 888  IDGLCK 905
            IDG CK
Sbjct: 674  IDGWCK 679



 Score = 90.9 bits (224), Expect = 4e-16
 Identities = 76/319 (23%), Positives = 137/319 (42%), Gaps = 24/319 (7%)
 Frame = +3

Query: 6    ILISSFCLVGDFVTVNNLLEEGVEGLDVGAIVLLYNAVLDGLVSCGLAYKAYLLIRAMMG 185
            I+I   C  G      +L  + V  +     VLLYN ++D L +     + YLL++ M G
Sbjct: 462  IVIDGLCNTGKLDLALSLFRDMVR-VGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKG 520

Query: 186  TE-------------CVDEAVMFKGKVS-----------PNNASFVIVIDGLCKTEKLDE 293
            +              C+       G +            P    + +++  LCK ++  E
Sbjct: 521  SGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAE 580

Query: 294  ALILYRGMIQMGCERNVLLYNNVIEALCNSDRLEESFEILGEMKESGLRPTEFTHNCIFG 473
            A      M++ G   +++ Y+  I+       ++++ EI  ++   G  P    +N +  
Sbjct: 581  ACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLIN 640

Query: 474  CLCRRESVMALLDLMKEMRVCGHEPWIKHSSGLIKQLCSRGDAIKACDFLADMAREGFLP 653
              C+ + V    D++ EM   G  P +   + LI   C  GD  +A   L+ M  +   P
Sbjct: 641  GFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREP 700

Query: 654  DIIAYSAAIDGLFKIREVDRAMKLFHDISSSGHGPDVVAYNIVIDGLCKQGRVIEARVLF 833
            ++I Y+  IDGL      D A+ L++++   G  P+ +++  +I GLCK G    A + F
Sbjct: 701  NVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYF 760

Query: 834  NEMLEKGLLPSVVTYNSMI 890
             EM E+   P  + Y ++I
Sbjct: 761  REMGERE-TPDTIVYVALI 778



 Score = 87.8 bits (216), Expect = 3e-15
 Identities = 61/228 (26%), Positives = 100/228 (43%)
 Frame = +3

Query: 204  AVMFKGKVSPNNASFVIVIDGLCKTEKLDEALILYRGMIQMGCERNVLLYNNVIEALCNS 383
            A M +    P+  ++   IDG  K + +D+AL ++R +   G   +V+ YN +I   C  
Sbjct: 586  AEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKV 645

Query: 384  DRLEESFEILGEMKESGLRPTEFTHNCIFGCLCRRESVMALLDLMKEMRVCGHEPWIKHS 563
             R+ E+ +IL EM   GL P+  T+N +    C+   +      +  M     EP +   
Sbjct: 646  KRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITY 705

Query: 564  SGLIKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDRAMKLFHDISS 743
            + LI  LC+ G    A     +M  +G  P+ I++ A I GL K    D A+  F ++  
Sbjct: 706  TTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMGE 765

Query: 744  SGHGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSM 887
                PD + Y  +I           A  +  EM+ KG  P  +  N +
Sbjct: 766  R-ETPDTIVYVALITSFISNKNPTLAFEILKEMVAKGKFPDPLDKNDL 812



 Score = 72.8 bits (177), Expect = 1e-10
 Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 3/225 (1%)
 Frame = +3

Query: 225 VSPNNASFVIVIDGLCKTEKLDEALILYRGMIQMG-CERNVLLYNNVIEALCNSDRLEES 401
           +SP    F I   G   T  ++EA +L+  +  M  C  N   +N ++EA+  S  ++  
Sbjct: 161 MSPGALGFFIRCLG--STGLVEEANLLFDQVKMMRLCVPNSYSFNCLLEAISKSGSIDLV 218

Query: 402 FEILGEMKESGLRPTEFTHNCIFGCLCRRESVMALLDLMKEMRVCGHEPWIKHS--SGLI 575
              L EM +SG  P ++T   +    C        L +  E+   G   W+     S L+
Sbjct: 219 EMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRG---WVDGHVLSILV 275

Query: 576 KQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDRAMKLFHDISSSGHG 755
                 G+  KA + +  M   G   +   +   I G  +   VD+A++LF  +  SG  
Sbjct: 276 LTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFA 335

Query: 756 PDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMI 890
           PDV  Y+ +I GLC +  + +A  L +EM E G+ P +   + +I
Sbjct: 336 PDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLI 380


>emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score =  335 bits (858), Expect = 1e-89
 Identities = 170/293 (58%), Positives = 216/293 (73%), Gaps = 5/293 (1%)
 Frame = +3

Query: 42   VTVNNLLEEGVEGLDVGAIVLLYNAVLDGLVSCGLAYKAYLLIRAMMGTECVD-----EA 206
            V +  L+EE +E LD  A++LLYN+VL+GLV+     KAY L+ AM G    D     + 
Sbjct: 347  VDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNKF 406

Query: 207  VMFKGKVSPNNASFVIVIDGLCKTEKLDEALILYRGMIQMGCERNVLLYNNVIEALCNSD 386
             M K  V P   SF IVIDGLC T KLD AL L+R M+++GC++NVLLYNN+I+ L NS+
Sbjct: 407  FMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSN 466

Query: 387  RLEESFEILGEMKESGLRPTEFTHNCIFGCLCRRESVMALLDLMKEMRVCGHEPWIKHSS 566
            RLEE + +L EMK SG RPT+FTHN IFGCLCRRE V   LD+++EMRV GHEPWIKH +
Sbjct: 467  RLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYT 526

Query: 567  GLIKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDRAMKLFHDISSS 746
             L+KQLC R  + +AC+FLA+M REGFLPDI+AYSAAIDG  KI+ VD+A+++F DI + 
Sbjct: 527  LLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICAR 586

Query: 747  GHGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCK 905
            G+ PDVVAYN +I+G CK  RV EA  + +EM+ KGL+PSVVTYN +IDG CK
Sbjct: 587  GYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCK 639



 Score = 90.9 bits (224), Expect = 4e-16
 Identities = 76/319 (23%), Positives = 137/319 (42%), Gaps = 24/319 (7%)
 Frame = +3

Query: 6    ILISSFCLVGDFVTVNNLLEEGVEGLDVGAIVLLYNAVLDGLVSCGLAYKAYLLIRAMMG 185
            I+I   C  G      +L  + V  +     VLLYN ++D L +     + YLL++ M G
Sbjct: 422  IVIDGLCNTGKLDLALSLFRDMVR-VGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKG 480

Query: 186  TE-------------CVDEAVMFKGKVS-----------PNNASFVIVIDGLCKTEKLDE 293
            +              C+       G +            P    + +++  LCK ++  E
Sbjct: 481  SGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAE 540

Query: 294  ALILYRGMIQMGCERNVLLYNNVIEALCNSDRLEESFEILGEMKESGLRPTEFTHNCIFG 473
            A      M++ G   +++ Y+  I+       ++++ EI  ++   G  P    +N +  
Sbjct: 541  ACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLIN 600

Query: 474  CLCRRESVMALLDLMKEMRVCGHEPWIKHSSGLIKQLCSRGDAIKACDFLADMAREGFLP 653
              C+ + V    D++ EM   G  P +   + LI   C  GD  +A   L+ M  +   P
Sbjct: 601  GFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREP 660

Query: 654  DIIAYSAAIDGLFKIREVDRAMKLFHDISSSGHGPDVVAYNIVIDGLCKQGRVIEARVLF 833
            ++I Y+  IDGL      D A+ L++++   G  P+ +++  +I GLCK G    A + F
Sbjct: 661  NVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYF 720

Query: 834  NEMLEKGLLPSVVTYNSMI 890
             EM E+   P  + Y ++I
Sbjct: 721  REMGERE-TPDTIVYVALI 738



 Score = 87.8 bits (216), Expect = 3e-15
 Identities = 61/228 (26%), Positives = 100/228 (43%)
 Frame = +3

Query: 204  AVMFKGKVSPNNASFVIVIDGLCKTEKLDEALILYRGMIQMGCERNVLLYNNVIEALCNS 383
            A M +    P+  ++   IDG  K + +D+AL ++R +   G   +V+ YN +I   C  
Sbjct: 546  AEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKV 605

Query: 384  DRLEESFEILGEMKESGLRPTEFTHNCIFGCLCRRESVMALLDLMKEMRVCGHEPWIKHS 563
             R+ E+ +IL EM   GL P+  T+N +    C+   +      +  M     EP +   
Sbjct: 606  KRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITY 665

Query: 564  SGLIKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDRAMKLFHDISS 743
            + LI  LC+ G    A     +M  +G  P+ I++ A I GL K    D A+  F ++  
Sbjct: 666  TTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMGE 725

Query: 744  SGHGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSM 887
                PD + Y  +I           A  +  EM+ KG  P  +  N +
Sbjct: 726  R-ETPDTIVYVALITSFISNKNPTLAFEILKEMVAKGKFPDPLDKNDL 772



 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 59/233 (25%), Positives = 110/233 (47%), Gaps = 17/233 (7%)
 Frame = +3

Query: 252 IVIDGLCKTEKLDEALILYRGMIQMGCERNVLLYNNVIEALCNSDRLEESFEILGEMKES 431
           I++    K  ++D+A  L   M  +G   N   +  +I       R++++ ++  +M++S
Sbjct: 233 ILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKS 292

Query: 432 GLRPTEFTHNCIFGCLCRRESVMALLDLMKEMRVCGHEPWIKHSSGLIKQLCSRGDAIKA 611
           G  P    ++ + G LC ++ +   L L+ EM+  G +P I+  S LI       D  + 
Sbjct: 293 GFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSEEVDIYRL 352

Query: 612 C-DFLADMAREGFLPDIIAYSAAIDGLFKIREVDRAMKLFHDISSSGH------------ 752
             + L D+  E  L   + Y++ ++GL   + VD+A  L   ++   +            
Sbjct: 353 IEERLEDLDTEAML---LLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNKFFMV 409

Query: 753 ----GPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGL 899
                P   +++IVIDGLC  G++  A  LF +M+  G   +V+ YN++ID L
Sbjct: 410 KEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKL 462



 Score = 63.2 bits (152), Expect = 8e-08
 Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 2/162 (1%)
 Frame = +3

Query: 411 LGEMKESGLRPTEFTHNCIFGCLCRRESVMALLDLMKEMRVCGHEPWIKHS--SGLIKQL 584
           L EM +SG  P ++T   +    C        L +  E+   G   W+     S L+   
Sbjct: 182 LKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRG---WVDGHVLSILVLTF 238

Query: 585 CSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDRAMKLFHDISSSGHGPDV 764
              G+  KA + +  M   G   +   +   I G  +   VD+A++LF  +  SG  PDV
Sbjct: 239 SKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDV 298

Query: 765 VAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMI 890
             Y+ +I GLC +  + +A  L +EM E G+ P +   + +I
Sbjct: 299 SVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLI 340


>ref|XP_002307160.1| predicted protein [Populus trichocarpa] gi|222856609|gb|EEE94156.1|
            predicted protein [Populus trichocarpa]
          Length = 726

 Score =  323 bits (827), Expect = 4e-86
 Identities = 164/304 (53%), Positives = 218/304 (71%), Gaps = 5/304 (1%)
 Frame = +3

Query: 9    LISSFCLVGDFVTVNNLLEEGVEGLDVGAIVLLYNAVLDGLVSCGLAYKAYLLIRAMMGT 188
            LISSF    +        EE  E +D  A  LLYN+VL+ LV  G  +KAY L++A+   
Sbjct: 246  LISSFSKEEELTC---FFEEMHEDMDPKASTLLYNSVLNSLVDNGSVHKAYHLLQAITIG 302

Query: 189  ECVDEAV---MFKGK--VSPNNASFVIVIDGLCKTEKLDEALILYRGMIQMGCERNVLLY 353
             C+ +     +F+GK  V PN+ +F IVI+GL KT  LD A+ L+R M ++GC+ ++LLY
Sbjct: 303  NCIGDGEIGKLFRGKAMVPPNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLY 362

Query: 354  NNVIEALCNSDRLEESFEILGEMKESGLRPTEFTHNCIFGCLCRRESVMALLDLMKEMRV 533
            NN+I+ LC S+RL+ES  +L EM+ESG+ PT FT+NCIFGCLCRR  +   L L+K+MR+
Sbjct: 363  NNLIDGLCTSNRLQESCGLLQEMEESGIEPTSFTNNCIFGCLCRRHDISGALHLLKKMRI 422

Query: 534  CGHEPWIKHSSGLIKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDR 713
             GH PWIKHS+ L+K+LC  G  ++AC FL DMA EGF PDI+AYSA +DGL KI+EVD+
Sbjct: 423  HGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQ 482

Query: 714  AMKLFHDISSSGHGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMID 893
            A+KLF DI + G+ PDV+AYNI+I GLCK  R+ EA+ L +EM EKGL+PS VTYN++ID
Sbjct: 483  ALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLID 542

Query: 894  GLCK 905
            GLCK
Sbjct: 543  GLCK 546



 Score = 97.4 bits (241), Expect = 4e-18
 Identities = 64/216 (29%), Positives = 104/216 (48%), Gaps = 3/216 (1%)
 Frame = +3

Query: 231  PNNASFVIVIDGLCKTEKLDEALILYRGMIQMGCERNVLLYNNVIEALCNSDRLEESFEI 410
            P+  ++   +DGL K +++D+AL L++ +   G   +V+ YN +I+ LC + R+ E+  +
Sbjct: 462  PDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNL 521

Query: 411  LGEMKESGLRPTEFTHNCIFGCLCRR---ESVMALLDLMKEMRVCGHEPWIKHSSGLIKQ 581
            L EM+E GL P+  T+N +   LC+    E  M  L +M E      EP +   S LI  
Sbjct: 522  LHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKE---REPNVITYSTLING 578

Query: 582  LCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDRAMKLFHDISSSGHGPD 761
            LC+ G    A     +M R+G  P  IAY A I GL      + A+    ++      PD
Sbjct: 579  LCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPNEALVYLREMEEREMKPD 638

Query: 762  VVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSV 869
               Y  +++          A  +  EM++KG  P +
Sbjct: 639  TYVYVGLLNAFLVDSNQPLAFEILQEMVDKGKFPDL 674



 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 73/319 (22%), Positives = 132/319 (41%), Gaps = 35/319 (10%)
 Frame = +3

Query: 42   VTVNNLLEEGVEGLDVGAI-----------VLLYNAVLDGLVSCGLAYKAYLLIRAM--- 179
            + +N L++ G   L VG             +LLYN ++DGL +     ++  L++ M   
Sbjct: 329  IVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEES 388

Query: 180  ------MGTECVDEAVMFKGKVS---------------PNNASFVIVIDGLCKTEKLDEA 296
                      C+   +  +  +S               P       ++  LCK  K  EA
Sbjct: 389  GIEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEA 448

Query: 297  LILYRGMIQMGCERNVLLYNNVIEALCNSDRLEESFEILGEMKESGLRPTEFTHNCIFGC 476
                  M + G + +++ Y+  ++ L     ++++ ++  ++   G  P    +N +   
Sbjct: 449  CKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKG 508

Query: 477  LCRRESVMALLDLMKEMRVCGHEPWIKHSSGLIKQLCSRGDAIKACDFLADMAREGFLPD 656
            LC+ + +    +L+ EM   G  P     + LI  LC      +A  FL+ M  +   P+
Sbjct: 509  LCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPN 568

Query: 657  IIAYSAAIDGLFKIREVDRAMKLFHDISSSGHGPDVVAYNIVIDGLCKQGRVIEARVLFN 836
            +I YS  I+GL      D A+ L++++   G  P  +AY   I GL   GR  EA V   
Sbjct: 569  VITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPNEALVYLR 628

Query: 837  EMLEKGLLPSVVTYNSMID 893
            EM E+ + P    Y  +++
Sbjct: 629  EMEEREMKPDTYVYVGLLN 647



 Score = 67.0 bits (162), Expect = 6e-09
 Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 3/208 (1%)
 Frame = +3

Query: 291 EALILYRGMIQMG-CERNVLLYNNVIEALCNSDRLEESFEILGEMKESGLRPTEFTHNCI 467
           EA +L+  + +MG C  N   Y  ++E L  S  ++     L EM + G    ++T   +
Sbjct: 48  EANLLFDQVQKMGLCVPNSYSYTCLLEVLSKSICIDLLEMRLKEMHDHGWGFDKYTLTPV 107

Query: 468 FGCLCRRESVMALLDLMKEMRVCGHEPWIKHS--SGLIKQLCSRGDAIKACDFLADMARE 641
               C        LD+  E+   G   W+     S L+      G   KAC+ +  M  +
Sbjct: 108 LQVYCNMAEFDKALDVFNEIHDRG---WVDEYVFSILVLAFSKWGKVDKACELIETMEEK 164

Query: 642 GFLPDIIAYSAAIDGLFKIREVDRAMKLFHDISSSGHGPDVVAYNIVIDGLCKQGRVIEA 821
               +   + + I G  K   VD+A+ LF  +  SG  PD+  Y+++I GLC    V +A
Sbjct: 165 NVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGLCVNKDVKKA 224

Query: 822 RVLFNEMLEKGLLPSVVTYNSMIDGLCK 905
             L++EM    + P V     +I    K
Sbjct: 225 LCLYSEMKGFKIQPDVKIVTKLISSFSK 252



 Score = 63.2 bits (152), Expect = 8e-08
 Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 1/175 (0%)
 Frame = +3

Query: 6   ILISSFCLVGDFVTVNNLLEEGVE-GLDVGAIVLLYNAVLDGLVSCGLAYKAYLLIRAMM 182
           ILI   C         NLL E  E GL   A+   YN ++DGL       +A L +    
Sbjct: 504 ILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVT--YNTLIDGLCKTDHLEEAMLFL---- 557

Query: 183 GTECVDEAVMFKGKVSPNNASFVIVIDGLCKTEKLDEALILYRGMIQMGCERNVLLYNNV 362
                  ++M + +  PN  ++  +I+GLC   + D+AL+L+  M + GC  + + Y   
Sbjct: 558 -------SMMIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAF 610

Query: 363 IEALCNSDRLEESFEILGEMKESGLRPTEFTHNCIFGCLCRRESVMALLDLMKEM 527
           I  L N  R  E+   L EM+E  ++P  + +  +        +     ++++EM
Sbjct: 611 IHGLSNCGRPNEALVYLREMEEREMKPDTYVYVGLLNAFLVDSNQPLAFEILQEM 665


>ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223525946|gb|EEF28343.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 634

 Score =  306 bits (784), Expect = 4e-81
 Identities = 162/303 (53%), Positives = 218/303 (71%), Gaps = 4/303 (1%)
 Frame = +3

Query: 9    LISSFCLVGDFVTVNNLLEEGVEGLDVGAIVLLYNAVLDGLVSCGLAYKAYLLIRAMMGT 188
            LISSF   G  +   ++LEE +E +++    LL N+VL  LV+ GL  KA  L+R MMG 
Sbjct: 155  LISSFPEEGKLI---DILEETLEDMNIETQTLLCNSVLSSLVNSGLIDKACCLLRNMMGN 211

Query: 189  ECVDEAVMFK----GKVSPNNASFVIVIDGLCKTEKLDEALILYRGMIQMGCERNVLLYN 356
               D+ V +K     K+ PN ASF IVI+GL +  KLD A+ L++ M ++GC R++LLYN
Sbjct: 212  GD-DDDVQYKLFRDEKIRPNTASFSIVINGLMQACKLDLAVCLFQDMAEIGCNRDLLLYN 270

Query: 357  NVIEALCNSDRLEESFEILGEMKESGLRPTEFTHNCIFGCLCRRESVMALLDLMKEMRVC 536
            N+I  LCNSDRLEES+++L EM+ESG +PT+FT N IFGCLC+R+ V   LDL+K+MR+ 
Sbjct: 271  NLINGLCNSDRLEESYKLLKEMEESGFKPTQFTLNSIFGCLCKRQDVSGALDLVKKMRLY 330

Query: 537  GHEPWIKHSSGLIKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDRA 716
            G EPW+KH + L+++LC  G A +A  FL DM +EGF P+IIAYSA + GL +++EVD+A
Sbjct: 331  GCEPWVKHYTLLVRKLCKHGKAAEASIFLTDMVQEGFPPNIIAYSALLGGLIEVQEVDQA 390

Query: 717  MKLFHDISSSGHGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDG 896
            +KLF DIS+ G  PDV+AYNI++ GL +  R  EAR LFNEM+ KGL+PSVVTYN +IDG
Sbjct: 391  LKLFKDISARGRCPDVIAYNILMKGLYEAHRTEEARNLFNEMVMKGLIPSVVTYNLLIDG 450

Query: 897  LCK 905
             CK
Sbjct: 451  WCK 453



 Score = 89.7 bits (221), Expect = 8e-16
 Identities = 68/273 (24%), Positives = 128/273 (46%), Gaps = 20/273 (7%)
 Frame = +3

Query: 147 AYKAYLLIRAMMGTECVDEAVMFKGKVSPNN-----ASFVIVIDGLCKTEKLDEALILYR 311
           AY   +L+ +      VD++  F  K+   N      +F  +I G  K  ++D+ + L+ 
Sbjct: 44  AYVFSILVLSFSKWGQVDKSFEFIEKMEEQNFRLNEKTFCNLIHGFVKQSRVDKGVQLFY 103

Query: 312 GMIQMGCERNVLLYNNVIEALCNSDRLEESFEILGEMKESGLRPTEFTHNCIFGCLCRRE 491
            M + G   ++ LY+ +I   C++ +L+++  +  EMK   ++P     + +        
Sbjct: 104 KMQKYGLSPDISLYDVLIGGFCSNKKLDKALSLYAEMKMLKIQPDIGVVSKLISSFPEEG 163

Query: 492 SVMALL-DLMKEMRVCGHEPWIKHSSGLIKQLCSRGDAIKACDFLADMAREG-------- 644
            ++ +L + +++M +   E      + ++  L + G   KAC  L +M   G        
Sbjct: 164 KLIDILEETLEDMNI---ETQTLLCNSVLSSLVNSGLIDKACCLLRNMMGNGDDDDVQYK 220

Query: 645 ------FLPDIIAYSAAIDGLFKIREVDRAMKLFHDISSSGHGPDVVAYNIVIDGLCKQG 806
                   P+  ++S  I+GL +  ++D A+ LF D++  G   D++ YN +I+GLC   
Sbjct: 221 LFRDEKIRPNTASFSIVINGLMQACKLDLAVCLFQDMAEIGCNRDLLLYNNLINGLCNSD 280

Query: 807 RVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCK 905
           R+ E+  L  EM E G  P+  T NS+   LCK
Sbjct: 281 RLEESYKLLKEMEESGFKPTQFTLNSIFGCLCK 313



 Score = 86.7 bits (213), Expect = 7e-15
 Identities = 71/288 (24%), Positives = 126/288 (43%), Gaps = 24/288 (8%)
 Frame = +3

Query: 99   VLLYNAVLDGLVSCGLAYKAYLLIRAM---------------MGTEC----VDEAVMFKG 221
            +LLYN +++GL +     ++Y L++ M                G  C    V  A+    
Sbjct: 266  LLLYNNLINGLCNSDRLEESYKLLKEMEESGFKPTQFTLNSIFGCLCKRQDVSGALDLVK 325

Query: 222  KV-----SPNNASFVIVIDGLCKTEKLDEALILYRGMIQMGCERNVLLYNNVIEALCNSD 386
            K+      P    + +++  LCK  K  EA I    M+Q G   N++ Y+ ++  L    
Sbjct: 326  KMRLYGCEPWVKHYTLLVRKLCKHGKAAEASIFLTDMVQEGFPPNIIAYSALLGGLIEVQ 385

Query: 387  RLEESFEILGEMKESGLRPTEFTHNCIFGCLCRRESVMALLDLMKEMRVCGHEPWIKHSS 566
             ++++ ++  ++   G  P    +N +   L          +L  EM + G  P +   +
Sbjct: 386  EVDQALKLFKDISARGRCPDVIAYNILMKGLYEAHRTEEARNLFNEMVMKGLIPSVVTYN 445

Query: 567  GLIKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDRAMKLFHDISSS 746
             LI   C  G    A + L  M+ +   P++  Y+  IDGL K    D A+ L++++   
Sbjct: 446  LLIDGWCKNGCIDDAMNCLCSMSAKEREPNVFTYTTLIDGLCKAGRPDDAVMLWNEMRRR 505

Query: 747  GHGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMI 890
            G  P+ VA+   I GLCK  +   A + F+EM E+ + P    Y S++
Sbjct: 506  GCRPNRVAFMGFIHGLCKCDKPEAALIHFHEMEEEEMEPDTYVYISLV 553



 Score = 81.3 bits (199), Expect = 3e-13
 Identities = 53/220 (24%), Positives = 101/220 (45%)
 Frame = +3

Query: 231  PNNASFVIVIDGLCKTEKLDEALILYRGMIQMGCERNVLLYNNVIEALCNSDRLEESFEI 410
            PN  ++  ++ GL + +++D+AL L++ +   G   +V+ YN +++ L  + R EE+  +
Sbjct: 369  PNIIAYSALLGGLIEVQEVDQALKLFKDISARGRCPDVIAYNILMKGLYEAHRTEEARNL 428

Query: 411  LGEMKESGLRPTEFTHNCIFGCLCRRESVMALLDLMKEMRVCGHEPWIKHSSGLIKQLCS 590
              EM   GL P+  T+N +    C+   +   ++ +  M     EP +   + LI  LC 
Sbjct: 429  FNEMVMKGLIPSVVTYNLLIDGWCKNGCIDDAMNCLCSMSAKEREPNVFTYTTLIDGLCK 488

Query: 591  RGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDRAMKLFHDISSSGHGPDVVA 770
             G    A     +M R G  P+ +A+   I GL K  + + A+  FH++      PD   
Sbjct: 489  AGRPDDAVMLWNEMRRRGCRPNRVAFMGFIHGLCKCDKPEAALIHFHEMEEEEMEPDTYV 548

Query: 771  YNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMI 890
            Y  ++           A  +  +M+++   P  +  N +I
Sbjct: 549  YISLVSAFVNISNFPMAFEILKKMVDRRNFPDPLDKNCII 588


>ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g08310, mitochondrial-like [Glycine max]
          Length = 942

 Score =  290 bits (742), Expect = 3e-76
 Identities = 156/305 (51%), Positives = 211/305 (69%), Gaps = 6/305 (1%)
 Frame = +3

Query: 9    LISSFCLVGDFVTVNNLLEEGVEGLDVGAIVLLYNAVLDGLVSCGLAYKAYLLIRAMMGT 188
            LIS+F    D   +  LLEE   G +   +VL+YNAVL   V+ GL  +A   +R M+ +
Sbjct: 353  LISAF---PDRGVIAKLLEEVPGGEEERTLVLIYNAVLTCYVNDGLMDEACRFLRMMIQS 409

Query: 189  ECVDEAVM------FKGKVSPNNASFVIVIDGLCKTEKLDEALILYRGMIQMGCERNVLL 350
            +   +  M       K  V PN ASF IVI+GL K ++LD AL L+  M Q     +VL+
Sbjct: 410  KASGDVQMDGFFNKVKKLVFPNGASFSIVINGLLKNDQLDLALSLFNDMKQFVDRPSVLI 469

Query: 351  YNNVIEALCNSDRLEESFEILGEMKESGLRPTEFTHNCIFGCLCRRESVMALLDLMKEMR 530
            YNN+I +LC+S+RLEES E+L EMKESG+ PT FT+N I+GCLC+R+ V+  +D++K MR
Sbjct: 470  YNNLINSLCDSNRLEESRELLREMKESGVEPTHFTYNSIYGCLCKRKDVLGAIDMLKGMR 529

Query: 531  VCGHEPWIKHSSGLIKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVD 710
             CGHEPWIK+S+ L+K+LC  G AI+AC+FL  M ++GFLPDI++YSAAI GL +I+E++
Sbjct: 530  ACGHEPWIKNSTLLVKELCDHGMAIEACNFLDSMVQQGFLPDIVSYSAAIGGLIQIQELN 589

Query: 711  RAMKLFHDISSSGHGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMI 890
            RA++LF D+ S GH PDVVA NI++ GLCK  RV EA  L +E++ KG  PSVVTYN +I
Sbjct: 590  RALQLFSDLYSRGHCPDVVASNILMRGLCKAYRVREAEKLLDEIVVKGFFPSVVTYNLLI 649

Query: 891  DGLCK 905
            D  CK
Sbjct: 650  DSWCK 654



 Score = 93.2 bits (230), Expect = 8e-17
 Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 20/244 (8%)
 Frame = +3

Query: 234 NNASFVIVIDGLCKTEKLDEALILYRGMIQMGCERNVLLYNNVIEALCNSDRLEESFEIL 413
           N  +F ++I G  K  ++D AL L+  M ++G    V L++ +I  LC +     +  +L
Sbjct: 276 NEKTFCVLIHGFVKEGRVDRALQLFDIMCRVGFTPPVSLFDVLIGGLCRNGDSHRALSLL 335

Query: 414 GEMKESGLRPTEFTHNCIFGCLCRRESVMALLDLMKEMRVCGHE---PWIKHSSGLIKQL 584
            EMKE G+ P       +      R  +  LL+      V G E     +   + ++   
Sbjct: 336 SEMKEFGVTPDVGIFTKLISAFPDRGVIAKLLE-----EVPGGEEERTLVLIYNAVLTCY 390

Query: 585 CSRGDAIKACDFL---------ADMAREGF--------LPDIIAYSAAIDGLFKIREVDR 713
            + G   +AC FL          D+  +GF         P+  ++S  I+GL K  ++D 
Sbjct: 391 VNDGLMDEACRFLRMMIQSKASGDVQMDGFFNKVKKLVFPNGASFSIVINGLLKNDQLDL 450

Query: 714 AMKLFHDISSSGHGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMID 893
           A+ LF+D+      P V+ YN +I+ LC   R+ E+R L  EM E G+ P+  TYNS+  
Sbjct: 451 ALSLFNDMKQFVDRPSVLIYNNLINSLCDSNRLEESRELLREMKESGVEPTHFTYNSIYG 510

Query: 894 GLCK 905
            LCK
Sbjct: 511 CLCK 514



 Score = 81.6 bits (200), Expect = 2e-13
 Identities = 55/213 (25%), Positives = 94/213 (44%)
 Frame = +3

Query: 252  IVIDGLCKTEKLDEALILYRGMIQMGCERNVLLYNNVIEALCNSDRLEESFEILGEMKES 431
            +++  LC      EA      M+Q G   +++ Y+  I  L     L  + ++  ++   
Sbjct: 542  LLVKELCDHGMAIEACNFLDSMVQQGFLPDIVSYSAAIGGLIQIQELNRALQLFSDLYSR 601

Query: 432  GLRPTEFTHNCIFGCLCRRESVMALLDLMKEMRVCGHEPWIKHSSGLIKQLCSRGDAIKA 611
            G  P     N +   LC+   V     L+ E+ V G  P +   + LI   C  G   KA
Sbjct: 602  GHCPDVVASNILMRGLCKAYRVREAEKLLDEIVVKGFFPSVVTYNLLIDSWCKNGSVDKA 661

Query: 612  CDFLADMAREGFLPDIIAYSAAIDGLFKIREVDRAMKLFHDISSSGHGPDVVAYNIVIDG 791
               L+ M+ E   P++I YS  +DG  +    D A+ +++++   G  P+ +A+  +I G
Sbjct: 662  MALLSRMSGEDREPNVITYSTLVDGFCRAERPDDALLVWNEMERKGCFPNQIAFMALIYG 721

Query: 792  LCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMI 890
            LCK  R   A     EM +K + P    Y ++I
Sbjct: 722  LCKCCRPTTALHYLREMEQKDMKPDSFIYIALI 754



 Score = 70.9 bits (172), Expect = 4e-10
 Identities = 67/289 (23%), Positives = 123/289 (42%), Gaps = 2/289 (0%)
 Frame = +3

Query: 6    ILISSFCLVGDFVTVNNLLEEGVEGLDVGAIVLLYNAVLDGLVSCGLAYKAYLLIRAMMG 185
            +L+   C  G  +   N L+  V+   +  IV  Y+A + GL+      +A  L      
Sbjct: 542  LLVKELCDHGMAIEACNFLDSMVQQGFLPDIVS-YSAAIGGLIQIQELNRALQLF----- 595

Query: 186  TECVDEAVMFKGKVSPNNASFVIVIDGLCKTEKLDEALILYRGMIQMGCERNVLLYNNVI 365
                  + ++     P+  +  I++ GLCK  ++ EA  L   ++  G   +V+ YN +I
Sbjct: 596  ------SDLYSRGHCPDVVASNILMRGLCKAYRVREAEKLLDEIVVKGFFPSVVTYNLLI 649

Query: 366  EALCNSDRLEESFEILGEMKESGLRPTEFTHNCIFGCLCRRESVMALLDLMKEMRVCGHE 545
            ++ C +  ++++  +L  M      P   T++ +    CR E     L +  EM   G  
Sbjct: 650  DSWCKNGSVDKAMALLSRMSGEDREPNVITYSTLVDGFCRAERPDDALLVWNEMERKGCF 709

Query: 546  PWIKHSSGLIKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDRAMKL 725
            P       LI  LC       A  +L +M ++   PD   Y A I       ++  A ++
Sbjct: 710  PNQIAFMALIYGLCKCCRPTTALHYLREMEQKDMKPDSFIYIALISSFLSDMDLASAFEI 769

Query: 726  FHDISSSGHGPDV--VAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPS 866
            F ++  SG+ P+     Y+IV+D + K  +          ++E+G LP+
Sbjct: 770  FKEMVYSGYFPESHDKNYSIVMDAIDKFSKDHRTSSGIQVLMEEGKLPT 818



 Score = 67.4 bits (163), Expect = 4e-09
 Identities = 55/189 (29%), Positives = 82/189 (43%), Gaps = 2/189 (1%)
 Frame = +3

Query: 330 CERNVLLYNNVIEALCNSDRLEESFEILGEMKESGLRPTEFTHNCIFGCLCRRESVMALL 509
           C  N   YN ++EAL  S  ++     L EMK  G    +FT   +    C        L
Sbjct: 169 CVPNDYCYNCLLEALSKSGEVDLIEARLEEMKGFGWEFDKFTLTPLLQAYCNARRFDEAL 228

Query: 510 DLMKEMRVCGHEPWIK-HSSGLIKQLCSR-GDAIKACDFLADMAREGFLPDIIAYSAAID 683
            +   MR  G   W+  H   ++    S+ GD  KA + +  M   G   +   +   I 
Sbjct: 229 RVYNVMREKG---WVDGHVCSMLALSFSKWGDVDKAFELVERMEGHGMRLNEKTFCVLIH 285

Query: 684 GLFKIREVDRAMKLFHDISSSGHGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLP 863
           G  K   VDRA++LF  +   G  P V  ++++I GLC+ G    A  L +EM E G+ P
Sbjct: 286 GFVKEGRVDRALQLFDIMCRVGFTPPVSLFDVLIGGLCRNGDSHRALSLLSEMKEFGVTP 345

Query: 864 SVVTYNSMI 890
            V  +  +I
Sbjct: 346 DVGIFTKLI 354



 Score = 56.6 bits (135), Expect = 8e-06
 Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 1/183 (0%)
 Frame = +3

Query: 360 VIEALCNSDRLEESFEILGEMKESGLR-PTEFTHNCIFGCLCRRESVMALLDLMKEMRVC 536
           +I  L ++    E+  +  EM+  GL  P ++ +NC+   L +   V  +   ++EM+  
Sbjct: 143 LIRCLGHAGLAREAHHLFDEMRLKGLCVPNDYCYNCLLEALSKSGEVDLIEARLEEMKGF 202

Query: 537 GHEPWIKHSSGLIKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDRA 716
           G E      + L++  C+     +A      M  +G++   +    A+    K  +VD+A
Sbjct: 203 GWEFDKFTLTPLLQAYCNARRFDEALRVYNVMREKGWVDGHVCSMLALS-FSKWGDVDKA 261

Query: 717 MKLFHDISSSGHGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDG 896
            +L   +   G   +   + ++I G  K+GRV  A  LF+ M   G  P V  ++ +I G
Sbjct: 262 FELVERMEGHGMRLNEKTFCVLIHGFVKEGRVDRALQLFDIMCRVGFTPPVSLFDVLIGG 321

Query: 897 LCK 905
           LC+
Sbjct: 322 LCR 324