BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017387
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    61   1e-07

>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
 Frame = +1

Query: 37  EAATVMEGINTALEMGWTSIWAETDSKVVANLFHKNK-VHWSMRDEWDQLKREARWINV- 210
           E    +  I  ++E     IW ETDSK+V   F  ++ V W +R  W+     A+ I   
Sbjct: 56  ELCAAIFAIEKSIEYNLRDIWLETDSKLVVKAFSSSEHVPWQLRTRWNNCLALAQKIKCV 115

Query: 211 -THTWRETNFAADNISKYGATLAAGTKKWWNGRP 309
            TH  RE N  AD+++K G +LA  T +WW+  P
Sbjct: 116 CTHIHREGNAGADSLAKNGKSLALLTSQWWSSSP 149