BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017376
         (1286 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36837.3| unnamed protein product [Vitis vinifera]              378   e-102
ref|XP_002267393.1| PREDICTED: mismatch repair endonuclease PMS2...   362   9e-98
ref|XP_002321013.1| predicted protein [Populus trichocarpa] gi|2...   358   2e-96
ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [...   355   1e-95
ref|XP_004136035.1| PREDICTED: mismatch repair endonuclease PMS2...   346   8e-93

>emb|CBI36837.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score =  378 bits (971), Expect = e-102
 Identities = 200/342 (58%), Positives = 242/342 (70%), Gaps = 5/342 (1%)
 Frame = -1

Query: 1238 GGKIVYGGYEEEISEHQKKSLLDVDVTMDALTDKDPQSIPQVLSIADTSNAVLDAP---- 1071
            GG I      E++  H+   L   DV   A   ++      +  ++  ++AV D P    
Sbjct: 495  GGNINDEKAGEDLENHETP-LPPADVATTASLSEEKN----ISDLSGVASAVQDTPVLDT 549

Query: 1070 PVPSSGLDLCSVLQFSMKDLIISR-QKLSRLRSSGFSNESKKINRCFTAATLELSQPDNX 894
            P+PSS L +CS LQFS ++L   R Q+LSRL+SS +        RC++AATLE SQP+N 
Sbjct: 550  PMPSSDLKICSTLQFSFEELRTRRHQRLSRLQSSSYKCGRTTTERCYSAATLEFSQPENE 609

Query: 893  XXXXXXXXXXXXXXXRLFNKQDFGRMKVIGQFNLGFIIGRLDQDLFIIDQHAADEKHNFE 714
                           +LF KQDFGRMKVIGQFNLGFIIG+LDQDLFI+DQHAADEK+NFE
Sbjct: 610  ERKVRALAAATTELEKLFKKQDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFE 669

Query: 713  RLSQSTIXXXXXXXXXXXXXXXXXXEIVATMHMDIIRKNGFTLVDELDAPPGQRFKLKAV 534
             L+QST+                  E++A++HMDIIRKNGF L ++L APPGQRFKLKAV
Sbjct: 670  HLAQSTVLNQQPLLRPLRLDLSPEEEVIASIHMDIIRKNGFALEEDLHAPPGQRFKLKAV 729

Query: 533  PFSKNITFGAEDVKELISTLSDSQGECTMMSSYKMDSLDSICPSRVRAMLASRACRSSVM 354
            PFSKNITFG EDVKELISTL+D QGEC+++ +YKMD+ DSICPSRVRAMLASRACRSSVM
Sbjct: 730  PFSKNITFGVEDVKELISTLADGQGECSILGTYKMDTCDSICPSRVRAMLASRACRSSVM 789

Query: 353  IGDPLGKNEMQKILEHLAKLKSPWNCPHGRPTMRHLIDLTTI 228
            IGDPLG+ EMQ+ILEHL+ LKSPWNCPHGRPTMRHL+DLTTI
Sbjct: 790  IGDPLGRKEMQRILEHLSDLKSPWNCPHGRPTMRHLVDLTTI 831


>ref|XP_002267393.1| PREDICTED: mismatch repair endonuclease PMS2-like [Vitis vinifera]
          Length = 937

 Score =  362 bits (930), Expect = 9e-98
 Identities = 192/341 (56%), Positives = 234/341 (68%), Gaps = 4/341 (1%)
 Frame = -1

Query: 1238 GGKIVYGGYEEEISEHQKKSLLDVDVTMDALTDKDPQSIPQVLSIADTSNAVLDAP---- 1071
            GG I      E++  H+   L   DV   A   ++      +  ++  ++AV D P    
Sbjct: 596  GGNINDEKAGEDLENHETP-LPPADVATTASLSEEKN----ISDLSGVASAVQDTPVLDT 650

Query: 1070 PVPSSGLDLCSVLQFSMKDLIISRQKLSRLRSSGFSNESKKINRCFTAATLELSQPDNXX 891
            P+PSS L +CS LQFS ++L                  +++  RC++AATLE SQP+N  
Sbjct: 651  PMPSSDLKICSTLQFSFEEL-----------------RTRRHQRCYSAATLEFSQPENEE 693

Query: 890  XXXXXXXXXXXXXXRLFNKQDFGRMKVIGQFNLGFIIGRLDQDLFIIDQHAADEKHNFER 711
                          +LF KQDFGRMKVIGQFNLGFIIG+LDQDLFI+DQHAADEK+NFE 
Sbjct: 694  RKVRALAAATTELEKLFKKQDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFEH 753

Query: 710  LSQSTIXXXXXXXXXXXXXXXXXXEIVATMHMDIIRKNGFTLVDELDAPPGQRFKLKAVP 531
            L+QST+                  E++A++HMDIIRKNGF L ++L APPGQRFKLKAVP
Sbjct: 754  LAQSTVLNQQPLLRPLRLDLSPEEEVIASIHMDIIRKNGFALEEDLHAPPGQRFKLKAVP 813

Query: 530  FSKNITFGAEDVKELISTLSDSQGECTMMSSYKMDSLDSICPSRVRAMLASRACRSSVMI 351
            FSKNITFG EDVKELISTL+D QGEC+++ +YKMD+ DSICPSRVRAMLASRACRSSVMI
Sbjct: 814  FSKNITFGVEDVKELISTLADGQGECSILGTYKMDTCDSICPSRVRAMLASRACRSSVMI 873

Query: 350  GDPLGKNEMQKILEHLAKLKSPWNCPHGRPTMRHLIDLTTI 228
            GDPLG+ EMQ+ILEHL+ LKSPWNCPHGRPTMRHL+DLTTI
Sbjct: 874  GDPLGRKEMQRILEHLSDLKSPWNCPHGRPTMRHLVDLTTI 914


>ref|XP_002321013.1| predicted protein [Populus trichocarpa] gi|222861786|gb|EEE99328.1|
            predicted protein [Populus trichocarpa]
          Length = 915

 Score =  358 bits (919), Expect = 2e-96
 Identities = 191/308 (62%), Positives = 226/308 (73%), Gaps = 2/308 (0%)
 Frame = -1

Query: 1130 QSIPQVLSIADTSNAVLDAPPVPSSGLDLCSVLQFSMKDLIISR-QKLSRLRSSGFS-NE 957
            + +P     A +S  +LDAP VP S   +CS LQFS +DL   R Q+LSRL+S  F+   
Sbjct: 603  EDLPVASPPAQSSIELLDAP-VPFSAQQICSTLQFSFQDLHSRRMQRLSRLQSGKFTFGG 661

Query: 956  SKKINRCFTAATLELSQPDNXXXXXXXXXXXXXXXXRLFNKQDFGRMKVIGQFNLGFIIG 777
            SK+ +R + AATLELSQPDN                RLF K+DFGRMKVIGQFNLGFIIG
Sbjct: 662  SKRSHRSYAAATLELSQPDNEERKLRALAAATTELERLFRKEDFGRMKVIGQFNLGFIIG 721

Query: 776  RLDQDLFIIDQHAADEKHNFERLSQSTIXXXXXXXXXXXXXXXXXXEIVATMHMDIIRKN 597
            +LDQDLFI+DQHAADEK+NFERL QSTI                  E+VA+M++DIIRKN
Sbjct: 722  KLDQDLFIVDQHAADEKYNFERLCQSTILNQQPLLRPLRLELSPEEEVVASMNLDIIRKN 781

Query: 596  GFTLVDELDAPPGQRFKLKAVPFSKNITFGAEDVKELISTLSDSQGECTMMSSYKMDSLD 417
            GF L ++  A PG  FKLKAVPFSKNITFG EDVK+LISTL+DSQGEC+++S YKMD+ D
Sbjct: 782  GFALEEDPHALPGHHFKLKAVPFSKNITFGVEDVKDLISTLADSQGECSIISRYKMDTAD 841

Query: 416  SICPSRVRAMLASRACRSSVMIGDPLGKNEMQKILEHLAKLKSPWNCPHGRPTMRHLIDL 237
            S+CPSRV AM ASRACRSSVMIGD LG+NEMQKILEHL  LKSPWNCPHGRPTMRHLID+
Sbjct: 842  SVCPSRVHAMFASRACRSSVMIGDALGRNEMQKILEHLVDLKSPWNCPHGRPTMRHLIDM 901

Query: 236  TTINNKQE 213
            ++I  + +
Sbjct: 902  SSIYERPD 909


>ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [Ricinus communis]
            gi|223537618|gb|EEF39241.1| DNA mismatch repair protein
            pms2, putative [Ricinus communis]
          Length = 924

 Score =  355 bits (912), Expect = 1e-95
 Identities = 191/337 (56%), Positives = 238/337 (70%), Gaps = 7/337 (2%)
 Frame = -1

Query: 1217 GYEEEISEHQKKSLLDVDVTMDALTDKDPQSIPQVLSIA----DTSNAVLDAPPVPSSGL 1050
            G  ++ SE  +K     DV  D    +  +++ + L +      +S+A+LD P    S  
Sbjct: 579  GKPKDDSEGAEKLSFIADVAPDTSPSRGLENMSEDLILTAPPLQSSSALLDVPK--PSAH 636

Query: 1049 DLCSVLQFSMKDLIISRQ-KLSRLRSSGFSNESKKI--NRCFTAATLELSQPDNXXXXXX 879
            ++CS LQF+ ++L   RQ + S L+ SG+++   K+  +R + AATLELSQPDN      
Sbjct: 637  EICSTLQFNFQELKAKRQQRRSILQFSGYASGGMKMKSHRTYAAATLELSQPDNEERKAR 696

Query: 878  XXXXXXXXXXRLFNKQDFGRMKVIGQFNLGFIIGRLDQDLFIIDQHAADEKHNFERLSQS 699
                      R+F KQDFGRMKVIGQFNLGFIIG+LDQDLFI+DQHAADEK+NFE L QS
Sbjct: 697  ALAAATTELERIFRKQDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFEHLCQS 756

Query: 698  TIXXXXXXXXXXXXXXXXXXEIVATMHMDIIRKNGFTLVDELDAPPGQRFKLKAVPFSKN 519
            TI                  E+VA+M+M++IRKNGF L ++  APPG RFKLKAVPFSKN
Sbjct: 757  TILNQQPLLRSLRLELSPEEEVVASMNMELIRKNGFALEEDPHAPPGHRFKLKAVPFSKN 816

Query: 518  ITFGAEDVKELISTLSDSQGECTMMSSYKMDSLDSICPSRVRAMLASRACRSSVMIGDPL 339
            ITFG EDVK+LISTL+DSQG+C+++ SYKMD  DS+CPSRVR MLASRACRSSVMIGDPL
Sbjct: 817  ITFGVEDVKDLISTLADSQGDCSIIGSYKMDKSDSVCPSRVRTMLASRACRSSVMIGDPL 876

Query: 338  GKNEMQKILEHLAKLKSPWNCPHGRPTMRHLIDLTTI 228
            G+NEMQKILEHLA L SPWNCPHGRPTMRHL+D+T+I
Sbjct: 877  GRNEMQKILEHLADLNSPWNCPHGRPTMRHLVDMTSI 913


>ref|XP_004136035.1| PREDICTED: mismatch repair endonuclease PMS2-like [Cucumis sativus]
            gi|449498483|ref|XP_004160549.1| PREDICTED: mismatch
            repair endonuclease PMS2-like [Cucumis sativus]
          Length = 921

 Score =  346 bits (887), Expect = 8e-93
 Identities = 176/286 (61%), Positives = 212/286 (74%), Gaps = 1/286 (0%)
 Frame = -1

Query: 1061 SSGLDLCSVLQFSMKDLIISR-QKLSRLRSSGFSNESKKINRCFTAATLELSQPDNXXXX 885
            S  L LCS   F   +L   R Q+  R + +G++ E KK+   + AATL+LSQ DN    
Sbjct: 633  SPQLKLCSTFHFDFHELKKRRFQRQLRFKLNGYTCERKKLKCHYAAATLKLSQTDNEDRK 692

Query: 884  XXXXXXXXXXXXRLFNKQDFGRMKVIGQFNLGFIIGRLDQDLFIIDQHAADEKHNFERLS 705
                        RLF K+DF RMKVIGQFNLGFIIG+LDQDLFI+DQHAADEK+NFERLS
Sbjct: 693  ARALEAAARELDRLFRKKDFSRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERLS 752

Query: 704  QSTIXXXXXXXXXXXXXXXXXXEIVATMHMDIIRKNGFTLVDELDAPPGQRFKLKAVPFS 525
            QSTI                  E+V ++HMD+ RKNGFT+ ++  + PG RF+LKAVPFS
Sbjct: 753  QSTILNQQPLLRPLGLELSAEEEVVVSIHMDVFRKNGFTIEEDPRSLPGNRFRLKAVPFS 812

Query: 524  KNITFGAEDVKELISTLSDSQGECTMMSSYKMDSLDSICPSRVRAMLASRACRSSVMIGD 345
            KNITFG EDVK+LISTL+DS+GEC+++ SY+MD+ DS+CPSRVRAMLASRACRSSVMIGD
Sbjct: 813  KNITFGVEDVKDLISTLADSEGECSIIGSYRMDTADSVCPSRVRAMLASRACRSSVMIGD 872

Query: 344  PLGKNEMQKILEHLAKLKSPWNCPHGRPTMRHLIDLTTINNKQELE 207
            PLG+NEMQKILEHLA+LKSPWNCPHGRPTMRHL+DLTT+   +E E
Sbjct: 873  PLGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLTTVKRSEESE 918