BLASTX nr result

ID: Coptis25_contig00017362 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017362
         (394 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532039.1| Polysialic acid capsule expression protein k...   128   5e-28
ref|XP_002306858.1| predicted protein [Populus trichocarpa] gi|2...   125   3e-27
gb|ADE75818.1| unknown [Picea sitchensis]                             124   1e-26
ref|XP_002302040.1| predicted protein [Populus trichocarpa] gi|1...   123   1e-26
ref|XP_003554289.1| PREDICTED: probable arabinose 5-phosphate is...   118   6e-25

>ref|XP_002532039.1| Polysialic acid capsule expression protein kpsF, putative [Ricinus
           communis] gi|223528309|gb|EEF30355.1| Polysialic acid
           capsule expression protein kpsF, putative [Ricinus
           communis]
          Length = 340

 Score =  128 bits (321), Expect = 5e-28
 Identities = 61/67 (91%), Positives = 65/67 (97%)
 Frame = -2

Query: 393 SGEGIFKLTVGEMCNRNPRTIGPDAMAVEAMEKMESPPSPVQFLPVIDHQNVVIGIITLH 214
           SGE IFKLTVGEMCNRNPRTIGPDAMAVEAM+KMESPPSPVQFLPVID +N+VIGI+TLH
Sbjct: 274 SGEAIFKLTVGEMCNRNPRTIGPDAMAVEAMKKMESPPSPVQFLPVIDQKNIVIGIVTLH 333

Query: 213 GLVSAGL 193
           GLVSAGL
Sbjct: 334 GLVSAGL 340


>ref|XP_002306858.1| predicted protein [Populus trichocarpa] gi|222856307|gb|EEE93854.1|
           predicted protein [Populus trichocarpa]
          Length = 341

 Score =  125 bits (315), Expect = 3e-27
 Identities = 60/67 (89%), Positives = 64/67 (95%)
 Frame = -2

Query: 393 SGEGIFKLTVGEMCNRNPRTIGPDAMAVEAMEKMESPPSPVQFLPVIDHQNVVIGIITLH 214
           SGEGIFKLTVGEMCNRNPRTIGPDAMAVEAM+KMESPPSPVQFLPVI   N++IGI+TLH
Sbjct: 275 SGEGIFKLTVGEMCNRNPRTIGPDAMAVEAMKKMESPPSPVQFLPVIKDDNILIGIVTLH 334

Query: 213 GLVSAGL 193
           GLVSAGL
Sbjct: 335 GLVSAGL 341


>gb|ADE75818.1| unknown [Picea sitchensis]
          Length = 342

 Score =  124 bits (310), Expect = 1e-26
 Identities = 56/65 (86%), Positives = 64/65 (98%)
 Frame = -2

Query: 387 EGIFKLTVGEMCNRNPRTIGPDAMAVEAMEKMESPPSPVQFLPVIDHQNVVIGIITLHGL 208
           EG+FKLTVGEMCNRNPRTIGPDAMA+EAM+KMESPPSPVQFLP++++ NVVIGI+TLHGL
Sbjct: 278 EGVFKLTVGEMCNRNPRTIGPDAMAIEAMQKMESPPSPVQFLPIVNNDNVVIGIVTLHGL 337

Query: 207 VSAGL 193
           VSAGL
Sbjct: 338 VSAGL 342


>ref|XP_002302040.1| predicted protein [Populus trichocarpa] gi|118483855|gb|ABK93818.1|
           unknown [Populus trichocarpa]
           gi|222843766|gb|EEE81313.1| predicted protein [Populus
           trichocarpa]
          Length = 341

 Score =  123 bits (309), Expect = 1e-26
 Identities = 59/67 (88%), Positives = 63/67 (94%)
 Frame = -2

Query: 393 SGEGIFKLTVGEMCNRNPRTIGPDAMAVEAMEKMESPPSPVQFLPVIDHQNVVIGIITLH 214
           SGE IFKLTVGEMCNRNPRTIGPDAMAVEAM+KMESPPSPVQFLPVI   N++IGI+TLH
Sbjct: 275 SGEAIFKLTVGEMCNRNPRTIGPDAMAVEAMKKMESPPSPVQFLPVIKDDNILIGIVTLH 334

Query: 213 GLVSAGL 193
           GLVSAGL
Sbjct: 335 GLVSAGL 341


>ref|XP_003554289.1| PREDICTED: probable arabinose 5-phosphate isomerase-like [Glycine
           max]
          Length = 342

 Score =  118 bits (295), Expect = 6e-25
 Identities = 54/67 (80%), Positives = 65/67 (97%)
 Frame = -2

Query: 393 SGEGIFKLTVGEMCNRNPRTIGPDAMAVEAMEKMESPPSPVQFLPVIDHQNVVIGIITLH 214
           SGE IFKLTVG+MCNRNPRTIGP+AMAV+AM+KME+PPSPVQFLPVI+ ++++IGI+TLH
Sbjct: 276 SGEAIFKLTVGQMCNRNPRTIGPEAMAVDAMKKMEAPPSPVQFLPVINDESILIGIVTLH 335

Query: 213 GLVSAGL 193
           GLVSAGL
Sbjct: 336 GLVSAGL 342


Top