BLASTX nr result
ID: Coptis25_contig00017325
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00017325
(1296 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI32131.3| unnamed protein product [Vitis vinifera] 247 4e-63
ref|XP_002263653.1| PREDICTED: U4/U6 small nuclear ribonucleopro... 247 5e-63
ref|XP_004170207.1| PREDICTED: LOW QUALITY PROTEIN: U4/U6 small ... 242 1e-61
ref|XP_002525342.1| U4/U6 small nuclear ribonucleoprotein Prp31,... 238 3e-60
ref|XP_002320218.1| predicted protein [Populus trichocarpa] gi|2... 236 7e-60
>emb|CBI32131.3| unnamed protein product [Vitis vinifera]
Length = 523
Score = 247 bits (631), Expect = 4e-63
Identities = 141/257 (54%), Positives = 179/257 (69%), Gaps = 19/257 (7%)
Frame = -3
Query: 715 EMNNTEDIIGDSFLADLDDLRFCDSK------------EEDVEGGLN--VSVNYDELESV 578
+M+ + + D FLADL++L ++ EED +G + ++NYD+L+SV
Sbjct: 34 KMSEFKAALSDPFLADLEELSDNEADLANEDDMGVGNMEEDDDGEMADIEALNYDDLDSV 93
Query: 577 SKLQKTQCYLDRMKKVEDKLENKGNMSDRG---DDNLEYKLLVECNALSADIDNEIVTVH 407
SKLQKTQ Y+D M+KVED LE +MS+ G +D+ EY+L+V+CNALS DI+NEIV +H
Sbjct: 94 SKLQKTQRYIDIMQKVEDALEKGSDMSNHGIVLEDDPEYQLIVDCNALSVDIENEIVIIH 153
Query: 406 NFIRSHY*QKFTELESLVPHPVVDYARVVKKLGNETDLTLVDLQGLLPSDSIM--AVIAS 233
NFIR +Y KF ELESLV HP+ DYARVVKK+GNE DLTLVDL+GLLPS IM +V AS
Sbjct: 154 NFIRDNYRLKFPELESLVHHPI-DYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTAS 212
Query: 232 TTSGKPLPEENHNKTIDACDCILSLDLGKNKALEFLESILGYVAPNLTVLVGSDVXXXXX 53
TTSGKPLPEEN KT+DACD L+LDL K K L+F+ES +GY+APNL+ +VGS V
Sbjct: 213 TTSGKPLPEENLKKTVDACDRALALDLAKKKVLDFVESRMGYIAPNLSAIVGSAVAAKLM 272
Query: 52 XXXXXXXXXAKMPACKV 2
AKMPAC V
Sbjct: 273 GTAGGLTALAKMPACNV 289
Score = 61.6 bits (148), Expect = 4e-07
Identities = 33/61 (54%), Positives = 42/61 (68%), Gaps = 5/61 (8%)
Frame = +2
Query: 1121 LDEFSELQKTQRYIGIMHKIDD-VNQGLLVLEHG----DSAEYQLIIDCNKLCVDIDKEI 1285
LD S+LQKTQRYI IM K++D + +G + HG D EYQLI+DCN L VDI+ EI
Sbjct: 90 LDSVSKLQKTQRYIDIMQKVEDALEKGSDMSNHGIVLEDDPEYQLIVDCNALSVDIENEI 149
Query: 1286 L 1288
+
Sbjct: 150 V 150
>ref|XP_002263653.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Vitis
vinifera]
Length = 489
Score = 247 bits (630), Expect = 5e-63
Identities = 141/256 (55%), Positives = 178/256 (69%), Gaps = 19/256 (7%)
Frame = -3
Query: 712 MNNTEDIIGDSFLADLDDLRFCDSK------------EEDVEGGLN--VSVNYDELESVS 575
M+ + + D FLADL++L ++ EED +G + ++NYD+L+SVS
Sbjct: 1 MSEFKAALSDPFLADLEELSDNEADLANEDDMGVGNMEEDDDGEMADIEALNYDDLDSVS 60
Query: 574 KLQKTQCYLDRMKKVEDKLENKGNMSDRG---DDNLEYKLLVECNALSADIDNEIVTVHN 404
KLQKTQ Y+D M+KVED LE +MS+ G +D+ EY+L+V+CNALS DI+NEIV +HN
Sbjct: 61 KLQKTQRYIDIMQKVEDALEKGSDMSNHGIVLEDDPEYQLIVDCNALSVDIENEIVIIHN 120
Query: 403 FIRSHY*QKFTELESLVPHPVVDYARVVKKLGNETDLTLVDLQGLLPSDSIM--AVIAST 230
FIR +Y KF ELESLV HP+ DYARVVKK+GNE DLTLVDL+GLLPS IM +V AST
Sbjct: 121 FIRDNYRLKFPELESLVHHPI-DYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTAST 179
Query: 229 TSGKPLPEENHNKTIDACDCILSLDLGKNKALEFLESILGYVAPNLTVLVGSDVXXXXXX 50
TSGKPLPEEN KT+DACD L+LDL K K L+F+ES +GY+APNL+ +VGS V
Sbjct: 180 TSGKPLPEENLKKTVDACDRALALDLAKKKVLDFVESRMGYIAPNLSAIVGSAVAAKLMG 239
Query: 49 XXXXXXXXAKMPACKV 2
AKMPAC V
Sbjct: 240 TAGGLTALAKMPACNV 255
Score = 61.6 bits (148), Expect = 4e-07
Identities = 33/61 (54%), Positives = 42/61 (68%), Gaps = 5/61 (8%)
Frame = +2
Query: 1121 LDEFSELQKTQRYIGIMHKIDD-VNQGLLVLEHG----DSAEYQLIIDCNKLCVDIDKEI 1285
LD S+LQKTQRYI IM K++D + +G + HG D EYQLI+DCN L VDI+ EI
Sbjct: 56 LDSVSKLQKTQRYIDIMQKVEDALEKGSDMSNHGIVLEDDPEYQLIVDCNALSVDIENEI 115
Query: 1286 L 1288
+
Sbjct: 116 V 116
>ref|XP_004170207.1| PREDICTED: LOW QUALITY PROTEIN: U4/U6 small nuclear
ribonucleoprotein Prp31-like [Cucumis sativus]
Length = 484
Score = 242 bits (618), Expect = 1e-61
Identities = 140/248 (56%), Positives = 174/248 (70%), Gaps = 18/248 (7%)
Frame = -3
Query: 691 IGDSFLADLDDL----RF-------CDSKEEDVEGGLN--VSVNYDELESVSKLQKTQCY 551
+ DSFLADLD+L +F ++ EED++G L S+NY++L+SVSKLQKTQ Y
Sbjct: 4 LADSFLADLDELSDEDKFQGEAGADAENMEEDIDGDLADLESLNYEDLDSVSKLQKTQRY 63
Query: 550 LDRMKKVEDKLENKGNMSDRG---DDNLEYKLLVECNALSADIDNEIVTVHNFIRSHY*Q 380
D M+KVED L+ N+S++G +D+ EY+L+VECNALS DI+NEI+ +HNFIR Y
Sbjct: 64 NDIMQKVEDALQTDSNISNQGFVLEDDPEYQLIVECNALSVDIENEIIIIHNFIRDKYRL 123
Query: 379 KFTELESLVPHPVVDYARVVKKLGNETDLTLVDLQGLLPSDSIM--AVIASTTSGKPLPE 206
KF ELESLV HP+ DYARVVKK+GNE DLTLVDL+GLLPS IM +V ASTTSGKPLPE
Sbjct: 124 KFPELESLVHHPI-DYARVVKKIGNEVDLTLVDLEGLLPSAVIMVVSVTASTTSGKPLPE 182
Query: 205 ENHNKTIDACDCILSLDLGKNKALEFLESILGYVAPNLTVLVGSDVXXXXXXXXXXXXXX 26
E KTIDACD L+LD K L F+ES +G++APNL+ +VGS V
Sbjct: 183 EILQKTIDACDRALALDSAKKMVLTFVESRMGHIAPNLSAIVGSAVAAKLMGTAGGLAAL 242
Query: 25 AKMPACKV 2
AKMPAC V
Sbjct: 243 AKMPACNV 250
>ref|XP_002525342.1| U4/U6 small nuclear ribonucleoprotein Prp31, putative [Ricinus
communis] gi|223535305|gb|EEF36980.1| U4/U6 small nuclear
ribonucleoprotein Prp31, putative [Ricinus communis]
Length = 774
Score = 238 bits (606), Expect = 3e-60
Identities = 138/249 (55%), Positives = 170/249 (68%), Gaps = 19/249 (7%)
Frame = -3
Query: 691 IGDSFLADLDDLRFCDSK------------EEDVEGGLN--VSVNYDELESVSKLQKTQC 554
+ DSFLADLD+L D+ EEDV+G + ++NYD+L+SVSKLQKTQ
Sbjct: 320 LADSFLADLDELSDNDADIIEEEDADAGNMEEDVDGDMADIEALNYDDLDSVSKLQKTQR 379
Query: 553 YLDRMKKVEDKLENKGNMSDRG---DDNLEYKLLVECNALSADIDNEIVTVHNFIRSHY* 383
+ D M+KVE LE + SD G +D+ EY+L+V+CNALS DI+NEI+ +HNFIR Y
Sbjct: 380 FNDIMQKVEGALEKGSDESDHGIVLEDDPEYQLIVDCNALSVDIENEIIIIHNFIRDKYR 439
Query: 382 QKFTELESLVPHPVVDYARVVKKLGNETDLTLVDLQGLLPSDSIM--AVIASTTSGKPLP 209
KF ELESLV HP+ DYARVVKK+GNE DLTLVDL+GLLPS IM +V ASTTSGKPL
Sbjct: 440 LKFPELESLVHHPI-DYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLS 498
Query: 208 EENHNKTIDACDCILSLDLGKNKALEFLESILGYVAPNLTVLVGSDVXXXXXXXXXXXXX 29
EE KT+DACD L+LD K K L+F+ES +GY+APNL+ +VGS V
Sbjct: 499 EEVLQKTVDACDRALALDTAKKKVLDFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLSA 558
Query: 28 XAKMPACKV 2
AKMPAC V
Sbjct: 559 LAKMPACNV 567
>ref|XP_002320218.1| predicted protein [Populus trichocarpa] gi|222860991|gb|EEE98533.1|
predicted protein [Populus trichocarpa]
Length = 483
Score = 236 bits (603), Expect = 7e-60
Identities = 135/248 (54%), Positives = 169/248 (68%), Gaps = 18/248 (7%)
Frame = -3
Query: 691 IGDSFLADLDDLRFCDSK-----------EEDVEGGLN--VSVNYDELESVSKLQKTQCY 551
+ DSFLADLD+L D+ EEDV+G L ++NYD+L++VSKLQKTQ Y
Sbjct: 3 LADSFLADLDELSDNDANIEEDDVEAGNMEEDVDGDLADIEALNYDDLDTVSKLQKTQRY 62
Query: 550 LDRMKKVEDKLENKGNMSDRG---DDNLEYKLLVECNALSADIDNEIVTVHNFIRSHY*Q 380
D M+KVED LE + D G +D+ EY+L+V CN LS DI+NEIV +HNFIR Y
Sbjct: 63 NDIMQKVEDALEKGSGVQDHGMVLEDDPEYQLIVNCNVLSVDIENEIVIIHNFIRDKYRL 122
Query: 379 KFTELESLVPHPVVDYARVVKKLGNETDLTLVDLQGLLPSD--SIMAVIASTTSGKPLPE 206
KF ELESLV HP+ DYARVVKK+GNE DLTLVD++GLLP+ +++V ASTTSGKPLPE
Sbjct: 123 KFPELESLVHHPI-DYARVVKKIGNEMDLTLVDMEGLLPAAIRMVISVTASTTSGKPLPE 181
Query: 205 ENHNKTIDACDCILSLDLGKNKALEFLESILGYVAPNLTVLVGSDVXXXXXXXXXXXXXX 26
E KTI+ACD L+LD K K L+F+E+ +GY+APNL+ +VGS V
Sbjct: 182 EVLQKTIEACDRALALDSAKKKVLDFVETRMGYIAPNLSAIVGSAVAAKLMGTAGGLTAL 241
Query: 25 AKMPACKV 2
AKMPAC V
Sbjct: 242 AKMPACNV 249
Score = 58.2 bits (139), Expect = 5e-06
Identities = 32/61 (52%), Positives = 42/61 (68%), Gaps = 5/61 (8%)
Frame = +2
Query: 1121 LDEFSELQKTQRYIGIMHKIDD-VNQGLLVLEHG----DSAEYQLIIDCNKLCVDIDKEI 1285
LD S+LQKTQRY IM K++D + +G V +HG D EYQLI++CN L VDI+ EI
Sbjct: 50 LDTVSKLQKTQRYNDIMQKVEDALEKGSGVQDHGMVLEDDPEYQLIVNCNVLSVDIENEI 109
Query: 1286 L 1288
+
Sbjct: 110 V 110