BLASTX nr result

ID: Coptis25_contig00017315 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017315
         (726 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268056.2| PREDICTED: uncharacterized protein LOC100267...    61   3e-07
ref|XP_002309188.1| predicted protein [Populus trichocarpa] gi|2...    58   2e-06
ref|XP_002323679.1| predicted protein [Populus trichocarpa] gi|2...    56   9e-06

>ref|XP_002268056.2| PREDICTED: uncharacterized protein LOC100267058 [Vitis vinifera]
           gi|297735531|emb|CBI18025.3| unnamed protein product
           [Vitis vinifera]
          Length = 239

 Score = 60.8 bits (146), Expect = 3e-07
 Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 7/87 (8%)
 Frame = -2

Query: 653 TKRSTMSPTQKHESQPTRKPLQPKNFNTTENVVKKK-------ISLDGNVNKENNPVSPV 495
           T R  ++ TQK  ++  RKPL+P+N +   + V+ K       IS   + NKEN+PV   
Sbjct: 3   TARFPVAGTQKLRTKIGRKPLRPRNISADLDSVQIKAKPEWIEISRVADSNKENHPVYVT 62

Query: 494 VKKIEPFDSSLAEELNVIRKRIERLRV 414
             ++E FD+SLAEEL+ +RKR ERL++
Sbjct: 63  PVRMESFDASLAEELSAVRKRRERLKI 89


>ref|XP_002309188.1| predicted protein [Populus trichocarpa] gi|222855164|gb|EEE92711.1|
           predicted protein [Populus trichocarpa]
          Length = 205

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 12/93 (12%)
 Frame = -2

Query: 656 LTKRSTMSPTQKHESQPTRKPLQPKNFNTTE----NVVKKK-----ISLDGNVNKENNPV 504
           L  +S ++  +    +  RKPLQPKN   T      ++K K      S+  + NKEN+P+
Sbjct: 2   LKLQSPLTGDENLRQKSCRKPLQPKNSPVTPMTQVQILKPKQEWIEFSVVKDSNKENHPI 61

Query: 503 ---SPVVKKIEPFDSSLAEELNVIRKRIERLRV 414
              +P    IEP DSSLAEEL+ I+K++ERLR+
Sbjct: 62  YTTTPTKSIIEPLDSSLAEELSAIKKKLERLRL 94


>ref|XP_002323679.1| predicted protein [Populus trichocarpa] gi|222868309|gb|EEF05440.1|
           predicted protein [Populus trichocarpa]
          Length = 205

 Score = 55.8 bits (133), Expect = 9e-06
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 12/74 (16%)
 Frame = -2

Query: 602 RKPLQPKNFNTTE----NVVKKK-----ISLDGNVNKENNPV---SPVVKKIEPFDSSLA 459
           RKPLQPKN   T      ++K K      S+  + NKEN+P+   +P    +EP DSSLA
Sbjct: 20  RKPLQPKNSPATPMTQIQILKSKQEWTEFSVVKDSNKENHPIYTTTPTKPIVEPLDSSLA 79

Query: 458 EELNVIRKRIERLR 417
           EEL+ I+K++ERLR
Sbjct: 80  EELSAIKKKLERLR 93


Top