BLASTX nr result
ID: Coptis25_contig00017304
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00017304
(1320 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263903.1| PREDICTED: F-box protein At5g49610 [Vitis vi... 186 1e-44
ref|XP_002329727.1| predicted protein [Populus trichocarpa] gi|2... 175 3e-41
gb|ABK92768.1| unknown [Populus trichocarpa] 175 3e-41
ref|XP_002525484.1| conserved hypothetical protein [Ricinus comm... 160 7e-37
ref|XP_004146726.1| PREDICTED: F-box protein At5g07610-like [Cuc... 150 5e-34
>ref|XP_002263903.1| PREDICTED: F-box protein At5g49610 [Vitis vinifera]
gi|296088512|emb|CBI37503.3| unnamed protein product
[Vitis vinifera]
Length = 378
Score = 186 bits (472), Expect = 1e-44
Identities = 125/352 (35%), Positives = 193/352 (54%), Gaps = 13/352 (3%)
Frame = -3
Query: 1291 ISGFFFQATMAVSRP--TPVKYVIMNSDQAVVQDKILDFLPEKVEVIASSNGLLCCHHSQ 1118
++GFFFQ + + Y+ + VQ I FLPE V ++ S NGL+CC +
Sbjct: 49 LAGFFFQERYQWCDEDISTISYIPATMEGTQVQQTIFSFLPEDVVILGSCNGLVCC---R 105
Query: 1117 KLGVRVDNLIYVCNPANQEYVQIEWPNGSDKHQYFALAFNPFHYPMDDLSSFKLVCMSK- 941
+ D I+VCNP+N++++++ DK + LAFNPF P+D ++FK+V +S+
Sbjct: 106 SVFPSPDPSIFVCNPSNKQWIRL-LETTPDKESSYGLAFNPFQSPIDMPTNFKVVRVSQA 164
Query: 940 ----EDMLSCLFQVYSSKSKEWRKLDVYKFGYDNRISWPDGQVVFASGVLHWLTNGN-VL 776
+D F++YSS++ W+K N + +F G+LHWLT+G+ VL
Sbjct: 165 QTDMDDDSYFSFEIYSSQAGAWKKSKEICQCNHNLFK---NKGIFVGGILHWLTDGDQVL 221
Query: 775 AFDVETEQPYFISLPVERIHKNYGLCEVCIGESEGRLHLIVIPKAGLRVWILGD--GQKW 602
+F++E E + IS P IH + E+CIGES GRLH I+I + GL+VW L D W
Sbjct: 222 SFNIENELSWLISAPFPTIHLT-AIPEMCIGESRGRLHYIMISEDGLQVWALEDYYDSNW 280
Query: 601 VVKHWVSLSRIEKEYPHFLY-TDAKINASLAPTNIVIPTWIEPVVYKDEILLIKLRHHFS 425
+ H +L +E+E LY T ++ ++ +I W++P+ +KD +LL+++
Sbjct: 281 SLVHSTTLEVMEEENSQLLYNTRDRVAQRISIDSI---PWMDPLAFKDGLLLMRV----- 332
Query: 424 FENEKLETGTKMYLYNFDTRKMEELFNIDKLG--SCTGFLNAVPYSMSLAPL 275
TK+ LY TRKMEEL N+ KLG S G L +PYS++LAPL
Sbjct: 333 --------STKIILYCIGTRKMEELCNLSKLGRNSIFGPL-VIPYSLNLAPL 375
>ref|XP_002329727.1| predicted protein [Populus trichocarpa] gi|222870635|gb|EEF07766.1|
predicted protein [Populus trichocarpa]
Length = 424
Score = 175 bits (443), Expect = 3e-41
Identities = 119/352 (33%), Positives = 187/352 (53%), Gaps = 9/352 (2%)
Frame = -3
Query: 1300 KAVISGFFFQATMAVSRPTPVKYVI-MNSDQAVVQDKILDFLPEKVEVIASSNGLLCCHH 1124
K +SGFFFQ P +K + ++ +Q + FLP+ V V+A NGL+CC
Sbjct: 51 KEPLSGFFFQQRHRYC-PDDIKTITYFPVERNRLQQDVFAFLPQDVVVLALCNGLVCCRS 109
Query: 1123 SQKLGVRVDNLIYVCNPANQEYVQIEWPNGSDKHQYFALAFNPFHYPMDDLSSFKLV--- 953
D IYVCNP N E+ +++W K + ALAFNPF +L++FK+V
Sbjct: 110 CYPFE---DPAIYVCNPLNSEWWKLDWKEPG-KESFIALAFNPFQDISVNLTNFKVVRPR 165
Query: 952 -CMSKEDMLSCLFQVYSSKSKEWRKLDVYKFGYDNRISWPDGQVVFASGVLHWLTNGN-V 779
++++ F++Y+S+++ W KL DN +S +G +F+ G+LHWLT+G+ +
Sbjct: 166 QFETEQEEAYFSFEIYASRTRNW-KLSKEVCWCDNSLSKNEG--IFSGGILHWLTDGDQI 222
Query: 778 LAFDVETEQPYFISLPVERIHKNYGLCEVCIGESEGRLHLIVIPKAGLRVWILGD--GQK 605
L F+VE E IS P+ N CIGESEG+L+ ++I + GL VW+L D
Sbjct: 223 LTFNVENELALLISTPLPAGEFNTRP-HACIGESEGQLYYVLISEEGLHVWVLEDYFDST 281
Query: 604 WVVKHWVSLSRIEKEYPHFLYTDAKINASLAPTNIVIPTWIEPVVYKDEILLIKLRHHFS 425
W +K+ +L++IEKE+ + N + I W++P+ +KD +L++++
Sbjct: 282 WSLKYSKTLAQIEKEHSDIMIN--LYNRVMLWQRIDDRPWMDPLAFKDGVLVVRI----- 334
Query: 424 FENEKLETGTKMYLYNFDTRKMEELFNIDKLGSCTGFLNAV-PYSMSLAPLG 272
+YLY+ DT KMEE+ K G+ + V PY+MSL PLG
Sbjct: 335 --------SNTIYLYHVDTSKMEEVGETSKFGAMSWVSPIVLPYTMSLVPLG 378
>gb|ABK92768.1| unknown [Populus trichocarpa]
Length = 384
Score = 175 bits (443), Expect = 3e-41
Identities = 119/352 (33%), Positives = 187/352 (53%), Gaps = 9/352 (2%)
Frame = -3
Query: 1300 KAVISGFFFQATMAVSRPTPVKYVI-MNSDQAVVQDKILDFLPEKVEVIASSNGLLCCHH 1124
K +SGFFFQ P +K + ++ +Q + FLP+ V V+A NGL+CC
Sbjct: 51 KEPLSGFFFQQRHRYC-PDDIKTITYFPVERNRLQQDVFAFLPQDVVVLALCNGLVCCRS 109
Query: 1123 SQKLGVRVDNLIYVCNPANQEYVQIEWPNGSDKHQYFALAFNPFHYPMDDLSSFKLV--- 953
D IYVCNP N E+ +++W K + ALAFNPF +L++FK+V
Sbjct: 110 CYPFE---DPAIYVCNPLNSEWWKLDWKEPG-KESFIALAFNPFQDISVNLTNFKVVRPR 165
Query: 952 -CMSKEDMLSCLFQVYSSKSKEWRKLDVYKFGYDNRISWPDGQVVFASGVLHWLTNGN-V 779
++++ F++Y+S+++ W KL DN +S +G +F+ G+LHWLT+G+ +
Sbjct: 166 QFETEQEEAYFSFEIYASRTRNW-KLSKEVCWCDNSLSKNEG--IFSGGILHWLTDGDQI 222
Query: 778 LAFDVETEQPYFISLPVERIHKNYGLCEVCIGESEGRLHLIVIPKAGLRVWILGD--GQK 605
L F+VE E IS P+ N CIGESEG+L+ ++I + GL VW+L D
Sbjct: 223 LTFNVENELALLISTPLPAGEFNTRP-HACIGESEGQLYYVLISEEGLHVWVLEDYFDST 281
Query: 604 WVVKHWVSLSRIEKEYPHFLYTDAKINASLAPTNIVIPTWIEPVVYKDEILLIKLRHHFS 425
W +K+ +L++IEKE+ + N + I W++P+ +KD +L++++
Sbjct: 282 WSLKYSKTLAQIEKEHSDIMIN--LYNRVMLWQRIDDRPWMDPLAFKDGVLVVRI----- 334
Query: 424 FENEKLETGTKMYLYNFDTRKMEELFNIDKLGSCTGFLNAV-PYSMSLAPLG 272
+YLY+ DT KMEE+ K G+ + V PY+MSL PLG
Sbjct: 335 --------SNTIYLYHVDTSKMEEVGETSKFGAMSWVSPIVLPYTMSLVPLG 378
>ref|XP_002525484.1| conserved hypothetical protein [Ricinus communis]
gi|223535221|gb|EEF36899.1| conserved hypothetical
protein [Ricinus communis]
Length = 375
Score = 160 bits (405), Expect = 7e-37
Identities = 111/355 (31%), Positives = 181/355 (50%), Gaps = 11/355 (3%)
Frame = -3
Query: 1306 RVKAVISGFFFQATMAVSRPT--PVKYVIMNSDQAVVQDKILDFLPEKVEVIASSNGLLC 1133
R + +SGFFFQ S + Y+ + + + K+ DFLP+ V ++ + NGL+C
Sbjct: 50 RRREPLSGFFFQQRFQWSEYDIETINYIPVKWEGLELHKKVFDFLPQDVVLLTTCNGLVC 109
Query: 1132 CHHSQKLGVRVDNLIYVCNPANQEYVQIEWPNGSDKHQYFALAFNPFHYPMDDLSSFKLV 953
C + I+VCNP N+E+V+++W DK ALAF+P + ++FKL
Sbjct: 110 CRSCFPFELPA---IFVCNPLNKEWVKLDWTE-PDKEHSIALAFDPLLDISGNSANFKL- 164
Query: 952 CMSKEDMLSCLFQVYSSKSKEWRKLDVYKFGYDNRISWPDGQV-----VFASGVLHWLTN 788
++ L F +YSS++ W I W + + V+ GVLHWLT+
Sbjct: 165 ----DEQLYFSFDIYSSRTGSW--------NLSKDICWCNSNLHKNKGVYIRGVLHWLTD 212
Query: 787 -GNVLAFDVETEQPYFISLPVERIHKNYGLCEVCIGESEGRLHLIVIPKAGLRVWILGD- 614
+L FDV+ E + IS PV + + CIGE EG LH ++I + G +W L D
Sbjct: 213 EDQILTFDVDNELAFLISAPVPAAEFSTA-PKACIGELEGCLHYVMISEEGFHIWSLEDY 271
Query: 613 -GQKWVVKHWVSLSRIEKEYPHFLYTDAKINASLAPTNIVIPTWIEPVVYKDEILLIKLR 437
W++K+ +L+ +E+E+P FL ++ L T+ V P W++ + +KD IL++++
Sbjct: 272 FELNWLLKYSKTLAEMEQEHPKFLLNMQEL-VKLQMTDDVSP-WVDSLAFKDGILVLRV- 328
Query: 436 HHFSFENEKLETGTKMYLYNFDTRKMEELFNIDKLGSCTGFLNAV-PYSMSLAPL 275
T +YLY+ KM+E+ + K G+ + + V PYSM+L PL
Sbjct: 329 ------------STIVYLYDIIRSKMQEVCDNSKFGTSSMYCPTVLPYSMTLVPL 371
>ref|XP_004146726.1| PREDICTED: F-box protein At5g07610-like [Cucumis sativus]
Length = 398
Score = 150 bits (380), Expect = 5e-34
Identities = 113/368 (30%), Positives = 184/368 (50%), Gaps = 21/368 (5%)
Frame = -3
Query: 1315 QCHRVKAVISGFFFQATMAVSRPTPVK-----YVIMNSDQAVVQDKILDFLPEKVEVIAS 1151
Q + +SGF FQ R P+ Y+ +++D V Q + FLPE V ++ S
Sbjct: 43 QFQKCGLALSGFMFQEKY---RKCPIDISTFTYMPIDADSKV-QKMVFGFLPEDVVILQS 98
Query: 1150 SNGLLCCHHSQKL--GVRVDNLIYVCNPANQEYVQIEWPNGSDKHQYFALAFNPFHYPMD 977
NGL+CC + IYVCNP +++V E D ALAF+P P++
Sbjct: 99 CNGLVCCRSCFRTQHSTTHSTTIYVCNPLFKKWVSFEVAQ-LDSFSSIALAFDPILDPVN 157
Query: 976 DLSSFKLVCM----SKEDMLSCLFQVYSSKSKEWRKLDVYKFGYDNRISWPDGQVV---- 821
++FK+V + ++++ + F++YSS++ W++ + + + DG ++
Sbjct: 158 TATNFKVVRIQQLENEQEEMYYTFEIYSSETGTWKE--------SSEVCYSDGNLLNNNG 209
Query: 820 -FASGVLHWLTNGN-VLAFDVETEQPYFISLPVERIHKNYGLCEVCIGESEGRLHLIVIP 647
+A GVLHWLT+ + +LAFD E E + P+ + CIGES+G LH I+I
Sbjct: 210 TYAKGVLHWLTDTDQILAFDTEKELSLLVPSPIPALEMFIDAPGTCIGESKGLLHFIMIC 269
Query: 646 KAGLRVWILGD--GQKWVVKHWVSLSRIEKEYPHFLYTDAKINASLAPTNIVIPTWIEPV 473
+ G+ VW L D KW +KH L IE E P+ + KI + +++P
Sbjct: 270 EDGIIVWCLDDYFEAKWTLKHSKQLQMIEDENPNMFFKLYKIMQRRRLPG--MEPYMDPW 327
Query: 472 VYKDEILLIKLRHHFSFENEKLETGTKMYLYNFDTRKMEELFNIDKLGSCTGFLN--AVP 299
+KDE+LL+++ FS +Y Y+ +T K+ E+ N+ LG F++ +P
Sbjct: 328 AFKDEVLLMRV---FS----------TVYFYHIETGKVVEVCNVASLGP-NPFVSPPVIP 373
Query: 298 YSMSLAPL 275
YS+SL PL
Sbjct: 374 YSLSLIPL 381