BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017267
         (526 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus ...   164   6e-39
ref|XP_002331405.1| predicted protein [Populus trichocarpa] gi|2...   162   4e-38
ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-lik...   161   6e-38
ref|XP_002870430.1| tRNA pseudouridine synthase family protein [...   156   2e-36
ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-lik...   152   2e-35

>ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus communis]
           gi|223536579|gb|EEF38224.1| pseudouridylate synthase,
           putative [Ricinus communis]
          Length = 443

 Score =  164 bits (416), Expect = 6e-39
 Identities = 91/171 (53%), Positives = 107/171 (62%)
 Frame = -3

Query: 524 TWRKDIRVQDVEDAINEAAPGKLRVISVSKVSREFHPNFSAKWRRYFYIFPLNDEGEELG 345
           TWRKD+R  ++EDAIN +APGK+RVISVS+VSR FHPNFSAKWRRY YIFP+ND GE+  
Sbjct: 197 TWRKDVRPHEIEDAINSSAPGKIRVISVSEVSRVFHPNFSAKWRRYLYIFPIND-GED-- 253

Query: 344 SELGVKGENYIIEEHNRKLINGYGAHFXXXXXXXXXXXXXXLARDDLAESERGRKPVSFS 165
           SE     E+      N +    Y                  L   D  E E  +KP  FS
Sbjct: 254 SEQSFDSEDL----ENLRSYEKYDEQRNGCAELTSEEHVEELITSDKDELEGAKKPRIFS 309

Query: 164 IDKVNXXXXXXQGRSLSYKMFARDTKASRSTGPPTECIIYHVRATEATLPC 12
           I +VN      +G+ LSYK+FARDTKASR+ GPPTEC IYH RATEA LPC
Sbjct: 310 ICRVNQLLQQLEGKLLSYKIFARDTKASRNVGPPTECFIYHARATEARLPC 360


>ref|XP_002331405.1| predicted protein [Populus trichocarpa] gi|222873619|gb|EEF10750.1|
           predicted protein [Populus trichocarpa]
          Length = 428

 Score =  162 bits (409), Expect = 4e-38
 Identities = 88/172 (51%), Positives = 108/172 (62%), Gaps = 2/172 (1%)
 Frame = -3

Query: 524 TWRKDIRVQDVEDAINEAAPGKLRVISVSKVSREFHPNFSAKWRRYFYIFPLND--EGEE 351
           TWRKD++  ++EDAIN+ APGK+RV S+S+VSR FHPNFSAKWRRY YIFPLND    EE
Sbjct: 182 TWRKDVKPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREE 241

Query: 350 LGSELGVKGENYIIEEHNRKLINGYGAHFXXXXXXXXXXXXXXLARDDLAESERGRKPVS 171
           +  E G+  EN+   E+  K  N  G                     D  E +  +KP S
Sbjct: 242 IEGEGGI--ENFSSHENCEKQRNECG-------ELASEENVENSIISDEDELQGAKKPRS 292

Query: 170 FSIDKVNXXXXXXQGRSLSYKMFARDTKASRSTGPPTECIIYHVRATEATLP 15
           FS+ +VN      +G+ LSYKMFARDTKASR+ GPPTEC +YH RATE  LP
Sbjct: 293 FSVCRVNQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLP 344


>ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-like [Vitis vinifera]
          Length = 433

 Score =  161 bits (407), Expect = 6e-38
 Identities = 91/173 (52%), Positives = 115/173 (66%), Gaps = 4/173 (2%)
 Frame = -3

Query: 524 TWRKDIRVQDVEDAINEAAPGKLRVISVSKVSREFHPNFSAKWRRYFYIFPLN--DEGEE 351
           TW+KD++VQD+EDAIN AAPGKLRVISVS+VSR FHPNFSAKWR YFYIFPLN  D+GE+
Sbjct: 185 TWKKDVKVQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLNDGDDGEQ 244

Query: 350 LG-SELGVKGENYIIEEHNRKLINGYGAH-FXXXXXXXXXXXXXXLARDDLAESERGRKP 177
           +  +E+ ++  ++     N K    YG                  L  DD  E E  +KP
Sbjct: 245 ISENEMDIQKISF-----NEK----YGEQGSECPAQYNGGENTENLIFDDDGEFESRKKP 295

Query: 176 VSFSIDKVNXXXXXXQGRSLSYKMFARDTKASRSTGPPTECIIYHVRATEATL 18
            +FSI +V+      +G+ LSYK+FARDTKASR+ GPPTEC ++H RATEA L
Sbjct: 296 STFSISRVDQLLRQLEGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARL 348


>ref|XP_002870430.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
           subsp. lyrata] gi|297316266|gb|EFH46689.1| tRNA
           pseudouridine synthase family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 420

 Score =  156 bits (394), Expect = 2e-36
 Identities = 91/180 (50%), Positives = 108/180 (60%), Gaps = 7/180 (3%)
 Frame = -3

Query: 524 TWRKDIRVQDVEDAINEAAPGKLRVISVSKVSREFHPNFSAKWRRYFYIFPLNDEGEELG 345
           TWRKDI    +EDAIN+ A GKLRV+S+SKVSR FHPNFSAKWRRY YIFPL D+ E L 
Sbjct: 170 TWRKDIEPIAIEDAINKDASGKLRVVSISKVSRSFHPNFSAKWRRYLYIFPL-DDAESL- 227

Query: 344 SELGVKGENYIIEEHNRKLINGYGAHFXXXXXXXXXXXXXXLARDDLAESERG------- 186
            E G   EN+I +E++ K  NG                   L+ DD  E E         
Sbjct: 228 HESGENHENFIFDENHEKQRNG--------LLSEENTEEVILSEDDELEIEETSNGLEVV 279

Query: 185 RKPVSFSIDKVNXXXXXXQGRSLSYKMFARDTKASRSTGPPTECIIYHVRATEATLPCDN 6
            KP  FS+ KV+      QG+ LSYKMFARDTKA+R+ GPPTEC +YH RA E  L C +
Sbjct: 280 EKPSDFSVIKVDQLLQQLQGKVLSYKMFARDTKAARNEGPPTECFMYHARAAEIRLSCSD 339


>ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 444

 Score =  152 bits (385), Expect = 2e-35
 Identities = 87/180 (48%), Positives = 110/180 (61%), Gaps = 9/180 (5%)
 Frame = -3

Query: 524 TWRKDIRVQDVEDAINEAAPGKLRVISVSKVSREFHPNFSAKWRRYFYIFPLNDEGEELG 345
           TWR D++ QD+ED+IN AAPGKLR  SVS+VSR FHPNFSAKWRRY YI PLND GE + 
Sbjct: 195 TWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLND-GENME 253

Query: 344 SELGV-------KGENYI-IEEHN-RKLINGYGAHFXXXXXXXXXXXXXXLARDDLAESE 192
            +          + EN++ IE  N  K ++G   +                  ++L  ++
Sbjct: 254 PDSTTWENVENREEENFVKIEASNGEKCVDGIHDNLVLSPND-----------EELVSAD 302

Query: 191 RGRKPVSFSIDKVNXXXXXXQGRSLSYKMFARDTKASRSTGPPTECIIYHVRATEATLPC 12
              KP +FSI +VN      +G+ LSYKMFARDTKASR+ GPPTEC +YH RA E  LPC
Sbjct: 303 ---KPQTFSITRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPC 359