BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017242
         (1311 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265242.1| PREDICTED: uncharacterized protein LOC100258...   119   1e-24
gb|ACF84400.1| unknown [Zea mays] gi|413933776|gb|AFW68327.1| F-...   119   2e-24
ref|XP_002464344.1| hypothetical protein SORBIDRAFT_01g016660 [S...   119   2e-24
ref|NP_001151885.1| LOC100285522 [Zea mays] gi|195650579|gb|ACG4...   119   2e-24
ref|XP_003635617.1| PREDICTED: F-box protein FBW2-like [Vitis vi...   117   5e-24

>ref|XP_002265242.1| PREDICTED: uncharacterized protein LOC100258440 [Vitis vinifera]
          Length = 446

 Score =  119 bits (299), Expect = 1e-24
 Identities = 90/273 (32%), Positives = 133/273 (48%), Gaps = 7/273 (2%)
 Frame = -1

Query: 942 RAWEDLNKDVLITIYQKMDLKDLIVGAPLCCTSWYKASKDPSVWRDIDFSLSIEYFLFTR 763
           R WE+LN+D L+ ++QK+ ++ +++  PL C SW+KAS DP  W  + F   IE      
Sbjct: 167 RKWEELNRDCLVNVFQKVGMESMLLDVPLVCKSWHKASLDPKCWEFLIFPEYIEPDDIWG 226

Query: 762 RGMPIKYPCDYFLDNKHDEVTQLIEFVVNRSQGSITSIKFFGFVDVDDLLLISQRCP--- 592
           RG P     + F+      VT  I+FV++RS G  T++        +     + +CP   
Sbjct: 227 RG-PF---AERFMLEFQFSVTAFIKFVIDRSCGHATALSLPICCTEEAFKYAANKCPKLE 282

Query: 591 --GLEHFKIHMYYSNLPKLLFGKETVCVAISNLKELEGMDVQNEFIDETILEQIDEFCPN 418
             GL    +H + S +PKL          IS  K L+ + + +    E IL  I  FC N
Sbjct: 283 LLGLNAGLLHKHSSIIPKL----------ISKWKNLQSLVLGSSHGMEEILTPIRLFCRN 332

Query: 417 FTKLKI-AGRVQENTATLISKSLPKLRVLDISGTRIGRLALLVILKGCKELEHLDVSRCS 241
           FT+L      V    A+ I  SLP LR L ++G  I + +L++IL+GCK+L  +DV  C 
Sbjct: 333 FTRLSAPKTNVGNKEASAIVTSLPNLRYLVLNGASIEQESLVMILQGCKQLIEIDVRDC- 391

Query: 240 PDWGRYRPLSEVIDGDD-EIRKSAYHLKVFKWK 145
                     +  D DD EI K A H+  F  K
Sbjct: 392 ----------DGFDEDDAEILKLASHIPSFMCK 414


>gb|ACF84400.1| unknown [Zea mays] gi|413933776|gb|AFW68327.1| F-box domain
           containing protein [Zea mays]
          Length = 294

 Score =  119 bits (298), Expect = 2e-24
 Identities = 78/268 (29%), Positives = 128/268 (47%), Gaps = 2/268 (0%)
 Frame = -1

Query: 945 SRAWEDLNKDVLITIYQKMDLKDLIVG-APLCCTSWYKASKDPSVWRDIDFSLSIEYFLF 769
           SR+W +L  D+L++I  ++   DL+ G A   C+SW  A++DP  WR +D    +     
Sbjct: 6   SRSWAELQHDLLVSIMTRVGAPDLLWGGASRACSSWRAAARDPLAWRRVDLRDWVALTSG 65

Query: 768 TRRGMPIKYPCDYFLDNKHDEVTQLIEFVVNRSQGSITSIKFFGFVDVDDLLLISQRCPG 589
            R   P        +   H  +  ++E     ++G I ++    F D D LL +++RCP 
Sbjct: 66  RRAARPGHSSSRVSV---HAALVGILEVAAKLAEGRIEAVLLPEFADEDHLLFLAERCPN 122

Query: 588 LEHFKIHMYYSNLPKLLFGKETVCVAISNLKELEGMDVQNEFIDETILEQIDEFCPNFTK 409
           L +F       +LP      +  C AI  L+ L+GM V    I+  +L  + + CP+F +
Sbjct: 123 LHYF-------SLPSTCMTYDQFCKAIGGLQSLKGMAVDESLINYDVLLHVHQCCPDFVE 175

Query: 408 LKIAG-RVQENTATLISKSLPKLRVLDISGTRIGRLALLVILKGCKELEHLDVSRCSPDW 232
           LK++   V E  A++I  SLP+L+ L+I    +   A++  L   ++LEHLD+S      
Sbjct: 176 LKVSALYVDEEMASVICNSLPRLKKLEIPSCDMSSAAIIRFLDCLEQLEHLDISG----- 230

Query: 231 GRYRPLSEVIDGDDEIRKSAYHLKVFKW 148
                  E       + + A  LKVF W
Sbjct: 231 ------YETSAISSPVLEKASRLKVFLW 252


>ref|XP_002464344.1| hypothetical protein SORBIDRAFT_01g016660 [Sorghum bicolor]
           gi|241918198|gb|EER91342.1| hypothetical protein
           SORBIDRAFT_01g016660 [Sorghum bicolor]
          Length = 297

 Score =  119 bits (297), Expect = 2e-24
 Identities = 73/238 (30%), Positives = 119/238 (50%), Gaps = 6/238 (2%)
 Frame = -1

Query: 945 SRAWEDLNKDVLITIYQKMDLKDLIVG-APLCCTSWYKASKDPSVWRDIDFSLSIEYFLF 769
           SR W +L  D+L+ I  ++ + DL+ G A   C+SW  A++DP  WR +D    +     
Sbjct: 6   SRPWAELQHDLLVAIVARVGVPDLLSGGASRACSSWRAAARDPLAWRRVDLRDWVALTSG 65

Query: 768 TRRGMP----IKYPCDYFLDNKHDEVTQLIEFVVNRSQGSITSIKFFGFVDVDDLLLISQ 601
            R   P     + P        H  +  ++E     ++G I ++    F D D LL +++
Sbjct: 66  RRAARPGHSSSRVPV-------HAALFGILEVAAKLAEGRIEAVLLPEFADEDHLLFLAE 118

Query: 600 RCPGLEHFKIHMYYSNLPKLLFGKETVCVAISNLKELEGMDVQNEFIDETILEQIDEFCP 421
           RCP L++F       +LP      +  C AI  L  L+GM V    I+  +L  + + CP
Sbjct: 119 RCPNLQYF-------SLPSTCMTYDQFCKAIGGLHSLKGMAVDETLINYDVLLHVHQCCP 171

Query: 420 NFTKLKIAG-RVQENTATLISKSLPKLRVLDISGTRIGRLALLVILKGCKELEHLDVS 250
           +F +LK++   V E  A++I  SLP+L+ L+I    +   A++  L   +ELEHLD+S
Sbjct: 172 DFVELKVSALYVDEEMASVICNSLPRLKKLEIPSADMSSAAIIKFLDCLEELEHLDIS 229


>ref|NP_001151885.1| LOC100285522 [Zea mays] gi|195650579|gb|ACG44757.1| F-box domain
           containing protein [Zea mays]
          Length = 294

 Score =  119 bits (297), Expect = 2e-24
 Identities = 79/272 (29%), Positives = 129/272 (47%), Gaps = 6/272 (2%)
 Frame = -1

Query: 945 SRAWEDLNKDVLITIYQKMDLKDLIVG-APLCCTSWYKASKDPSVWRDIDFSLSIEYFLF 769
           SR+W +L  D+L++I  ++   DL+ G A   C+SW  A++DP  WR +D    +     
Sbjct: 6   SRSWAELQHDLLVSIMTRVGAPDLLWGGASRACSSWRAAARDPLAWRRVDLRDWVALTSG 65

Query: 768 TRRGMP----IKYPCDYFLDNKHDEVTQLIEFVVNRSQGSITSIKFFGFVDVDDLLLISQ 601
            R   P     + P        H  +  ++E     ++G I ++    F D D LL +++
Sbjct: 66  RRAARPGHSSSRVPV-------HAALVGILEVAAKLAEGRIEAVLLPEFADEDHLLFLAE 118

Query: 600 RCPGLEHFKIHMYYSNLPKLLFGKETVCVAISNLKELEGMDVQNEFIDETILEQIDEFCP 421
           RCP L +F       +LP      +  C AI  L+ L+GM V    I+  +L  + + CP
Sbjct: 119 RCPNLHYF-------SLPSTCMTYDQFCKAIGGLQSLKGMAVDESLINYDVLLHVHQCCP 171

Query: 420 NFTKLKIAG-RVQENTATLISKSLPKLRVLDISGTRIGRLALLVILKGCKELEHLDVSRC 244
           +F +LK++   V E  A++I  SLP+L+ L+I    +   A++  L   ++LEHLD+S  
Sbjct: 172 DFVELKVSALYVDEEMASVICNSLPRLKKLEIPSCDMSSAAIIRFLDCLEQLEHLDISG- 230

Query: 243 SPDWGRYRPLSEVIDGDDEIRKSAYHLKVFKW 148
                      E       + + A  LKVF W
Sbjct: 231 ----------YETSAISSPVLEKASRLKVFLW 252


>ref|XP_003635617.1| PREDICTED: F-box protein FBW2-like [Vitis vinifera]
          Length = 305

 Score =  117 bits (294), Expect = 5e-24
 Identities = 81/270 (30%), Positives = 134/270 (49%), Gaps = 7/270 (2%)
 Frame = -1

Query: 942 RAWEDLNKDVLITIYQKMDLKDLIVGAPLCCTSWYKASKDPSVWRDIDFSLSIEYFLFTR 763
           R WE+LN D+L+ ++ ++ ++ L++  P  C SWYKAS++P  W  + F   I+      
Sbjct: 4   RKWEELNMDILVNVFGRVGMESLLLDVPFVCKSWYKASREPQCWEHLIFPEYIKSDDIWE 63

Query: 762 RGMPIKYPCDYFLDNKHD--EVTQLIEFVVNRSQGSITSIKFFGFVDVDDLLLISQRCPG 589
              P +   +  +    +   VT  ++F+VNRS G  T IK       + L  I+  CP 
Sbjct: 64  EDSPDRGFAERLVTTYQENLSVTAFMKFIVNRSGGCATIIKLPKDCTEEALEYIANECPR 123

Query: 588 LEHFKIHMYYSNLPKLLFGKETVCVAISNLKELEGMDVQNEFID----ETILEQIDEFCP 421
           L+   + + ++N     F  E +   +S  K LE M +    +     +++L QI   C 
Sbjct: 124 LK--ALDVVFNN-----FSMEDIIPKLSKWKSLELMRLGKFHVGLFHMKSVLPQIGLHCN 176

Query: 420 NFTKLKIA-GRVQENTATLISKSLPKLRVLDISGTRIGRLALLVILKGCKELEHLDVSRC 244
           NF  L      ++++ A+ I  SLP+L+ LD+  +   + AL++IL+GCK+L HLDV +C
Sbjct: 177 NFIWLSAPHASIEKDEASAIVASLPRLKYLDLHYSFFEKEALVMILQGCKKLVHLDVRKC 236

Query: 243 SPDWGRYRPLSEVIDGDDEIRKSAYHLKVF 154
                         D D EI + A H+ VF
Sbjct: 237 ----------FGFCDDDAEILELASHIPVF 256