BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017189
         (1083 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containi...   454   e-125
ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   443   e-122
ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containi...   441   e-121
ref|XP_003533519.1| PREDICTED: pentatricopeptide repeat-containi...   436   e-120
gb|ACU21163.1| unknown [Glycine max]                                  436   e-120

>ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
            chloroplastic [Vitis vinifera]
            gi|296084180|emb|CBI24568.3| unnamed protein product
            [Vitis vinifera]
          Length = 516

 Score =  454 bits (1167), Expect = e-125
 Identities = 228/358 (63%), Positives = 276/358 (77%)
 Frame = -3

Query: 1078 TKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETCFHTQSINHGIQLHHLIPPNXXXXXX 899
            TK QAL+A+++D+Q SI  GI +D +IFSSLLETCF  Q+ +HGI++H LIP +      
Sbjct: 55   TKLQALEALLRDLQASIQDGITVDAQIFSSLLETCFQLQAFDHGIRIHRLIPTSLLRKSV 114

Query: 898  XXXXXXXXXXXSCGLIETAHQVFDEMYKRDLSAFPWNSLISGYAELGKYEDALALYFQME 719
                       S G IE AH++FD+M +R+ SAF WNSLISGYAELG YEDA+ALYFQME
Sbjct: 115  ALSSKLLRLYASIGRIEEAHRLFDQMSRRNRSAFAWNSLISGYAELGLYEDAMALYFQME 174

Query: 718  EEGVELDQFTFPRVLKACAGLGSIRVGEAVHRDIVRRGFVLDGFVLNALVDMYAKCGDIV 539
            EEGV  D+FTFPRVLKAC G+GSI VGE VHR +VR GF  DGFVLNALVDMYAKCGDIV
Sbjct: 175  EEGVVPDRFTFPRVLKACGGIGSISVGEEVHRHVVRCGFADDGFVLNALVDMYAKCGDIV 234

Query: 538  MARKVFNKIGVRDSVSWNSMLTGYIHHGLMVEALDIFRGMIDDGFEPDSVAISTILSKFS 359
             ARKVF+KI  RDSVSWNSMLTGYI HGL ++AL IFR M+  GFEPD+VAIST+++   
Sbjct: 235  KARKVFDKIVCRDSVSWNSMLTGYIRHGLPLQALSIFRRMLQYGFEPDAVAISTVVTGVP 294

Query: 358  SSKVAFEVHAWVLRRGHEQSLSIANSLIALYSEQGKLDEACWLFDMMVDRDVVSWNAIIS 179
            S K+A ++H WVLRRG + +LSIANSLI LYS  GKLD+ACWLFD M +RDVVSWN+IIS
Sbjct: 295  SLKLAGQIHGWVLRRGVQWNLSIANSLIVLYSNHGKLDQACWLFDHMPERDVVSWNSIIS 354

Query: 178  GHWKHSQALEYFNQMENSNILPDSVTFVSLLSICARLGLVEDGRELFVKMKNRYGIKP 5
             H K  +A+ YF++M+ +++LPD VTFVSLLS CA LGLV+DG  LF  M+  YG+ P
Sbjct: 355  AHRKDLKAITYFSRMQKADVLPDVVTFVSLLSACAHLGLVKDGEGLFSMMREDYGMIP 412


>ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g25270, chloroplastic-like [Cucumis sativus]
          Length = 489

 Score =  443 bits (1139), Expect = e-122
 Identities = 222/359 (61%), Positives = 268/359 (74%)
 Frame = -3

Query: 1081 QTKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETCFHTQSINHGIQLHHLIPPNXXXXX 902
            Q+K QALDA++ D++ SI+ G+ ID EIFSSLLE C+  Q+I+HGI++H LIP N     
Sbjct: 29   QSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQAIHHGIRIHRLIPTNLLRRN 88

Query: 901  XXXXXXXXXXXXSCGLIETAHQVFDEMYKRDLSAFPWNSLISGYAELGKYEDALALYFQM 722
                        S G +E AHQVFDEM  R+ SAF WNSLISGYAELG YEDALALYFQM
Sbjct: 89   VGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQM 148

Query: 721  EEEGVELDQFTFPRVLKACAGLGSIRVGEAVHRDIVRRGFVLDGFVLNALVDMYAKCGDI 542
            EEEGVE D FTFPRVLKAC G+GSI++GEAVHR +VR GF  D FVLNALVDMY+KCG I
Sbjct: 149  EEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCI 208

Query: 541  VMARKVFNKIGVRDSVSWNSMLTGYIHHGLMVEALDIFRGMIDDGFEPDSVAISTILSKF 362
            V ARKVF++I  +D VSWNSMLTGY  HGL  EALDIF  MI +G+EPDSVA+ST+LS  
Sbjct: 209  VRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNI 268

Query: 361  SSSKVAFEVHAWVLRRGHEQSLSIANSLIALYSEQGKLDEACWLFDMMVDRDVVSWNAII 182
            SS K    +H WV+R G E +LSIANSLI +Y++ GKL+ A WLF  M  +D+VSWN+II
Sbjct: 269  SSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSII 328

Query: 181  SGHWKHSQALEYFNQMENSNILPDSVTFVSLLSICARLGLVEDGRELFVKMKNRYGIKP 5
            S H+  ++AL YF  ME+  + PD VTFVSLLS CA LGLV++G EL+  MK +YGI+P
Sbjct: 329  SAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGXELYFLMKGKYGIRP 387


>ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
            chloroplastic-like [Cucumis sativus]
          Length = 489

 Score =  441 bits (1134), Expect = e-121
 Identities = 221/359 (61%), Positives = 268/359 (74%)
 Frame = -3

Query: 1081 QTKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETCFHTQSINHGIQLHHLIPPNXXXXX 902
            Q+K QALDA++ D++ SI+ G+ ID EIFSSLLE C+  Q+I+HGI++H LIP N     
Sbjct: 29   QSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQAIHHGIRIHRLIPTNLLRRN 88

Query: 901  XXXXXXXXXXXXSCGLIETAHQVFDEMYKRDLSAFPWNSLISGYAELGKYEDALALYFQM 722
                        S G +E AHQVFDEM  R+ SAF WNSLISGYAELG YEDALALYFQM
Sbjct: 89   VGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQM 148

Query: 721  EEEGVELDQFTFPRVLKACAGLGSIRVGEAVHRDIVRRGFVLDGFVLNALVDMYAKCGDI 542
            EEEGVE D FTFPRVLKAC G+GSI++GEAVHR +VR GF  D FVLNALVDMY+KCG I
Sbjct: 149  EEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCI 208

Query: 541  VMARKVFNKIGVRDSVSWNSMLTGYIHHGLMVEALDIFRGMIDDGFEPDSVAISTILSKF 362
            V ARKVF++I  +D VSWNSMLTGY  HGL  EALDIF  MI +G+EPDSVA+ST+LS  
Sbjct: 209  VRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNI 268

Query: 361  SSSKVAFEVHAWVLRRGHEQSLSIANSLIALYSEQGKLDEACWLFDMMVDRDVVSWNAII 182
            SS K    +H WV+R G E +LSIANSLI +Y++ GKL+ A WLF  M  +D+VSWN+II
Sbjct: 269  SSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSII 328

Query: 181  SGHWKHSQALEYFNQMENSNILPDSVTFVSLLSICARLGLVEDGRELFVKMKNRYGIKP 5
            S H+  ++AL YF  ME+  + PD VTFVSLLS CA LGLV++G +L+  MK +YGI+P
Sbjct: 329  SAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGLVKEGGKLYFLMKGKYGIRP 387


>ref|XP_003533519.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
            chloroplastic-like [Glycine max]
          Length = 526

 Score =  436 bits (1122), Expect = e-120
 Identities = 207/359 (57%), Positives = 273/359 (76%)
 Frame = -3

Query: 1081 QTKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETCFHTQSINHGIQLHHLIPPNXXXXX 902
            +TK +AL+ ++KD++ S+ +GI ID EI++SLLETC+  Q+I HGI++H LIP +     
Sbjct: 65   KTKLEALEQVVKDLEASVEKGIKIDPEIYASLLETCYRFQAILHGIRVHRLIPTSLLHKN 124

Query: 901  XXXXXXXXXXXXSCGLIETAHQVFDEMYKRDLSAFPWNSLISGYAELGKYEDALALYFQM 722
                        SCG ++ AH +FD+M KRD SAFPWNSLISGYA++G Y++A+ALYFQM
Sbjct: 125  VGISSKLLRLYASCGYLDDAHDLFDQMAKRDTSAFPWNSLISGYAQVGHYDEAIALYFQM 184

Query: 721  EEEGVELDQFTFPRVLKACAGLGSIRVGEAVHRDIVRRGFVLDGFVLNALVDMYAKCGDI 542
             EEGVE D FTFPRVLK CAG+GS++VGE VHR  +R GF  DGF+LNALVDMY+KCGDI
Sbjct: 185  VEEGVEADLFTFPRVLKVCAGIGSVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDI 244

Query: 541  VMARKVFNKIGVRDSVSWNSMLTGYIHHGLMVEALDIFRGMIDDGFEPDSVAISTILSKF 362
            V ARKVF+K+  RD VSWNSMLT Y+HHGL V+A++IFR M+ +G EPDSV+IST+L+  
Sbjct: 245  VKARKVFDKMPHRDPVSWNSMLTAYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGV 304

Query: 361  SSSKVAFEVHAWVLRRGHEQSLSIANSLIALYSEQGKLDEACWLFDMMVDRDVVSWNAII 182
            SS  +  ++H WV+ +GHE +LSIANSLI +YS  G+L++A W+F++M +RDVVSWN+II
Sbjct: 305  SSLGLGVQIHGWVISQGHEWNLSIANSLIMMYSNHGRLEKARWVFNLMPERDVVSWNSII 364

Query: 181  SGHWKHSQALEYFNQMENSNILPDSVTFVSLLSICARLGLVEDGRELFVKMKNRYGIKP 5
            S H K  +AL +F QME + + PD +TFVS+LS CA LGL++DG  LF  M  +Y IKP
Sbjct: 365  SAHCKRREALAFFEQMEGAGVQPDKITFVSILSACAYLGLLKDGERLFALMCGKYKIKP 423


>gb|ACU21163.1| unknown [Glycine max]
          Length = 481

 Score =  436 bits (1122), Expect = e-120
 Identities = 207/359 (57%), Positives = 273/359 (76%)
 Frame = -3

Query: 1081 QTKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETCFHTQSINHGIQLHHLIPPNXXXXX 902
            +TK +AL+ ++KD++ S+ +GI ID EI++SLLETC+  Q+I HGI++H LIP +     
Sbjct: 65   KTKLEALEQVVKDLEASVEKGIKIDPEIYASLLETCYRFQAILHGIRVHRLIPTSLLHKN 124

Query: 901  XXXXXXXXXXXXSCGLIETAHQVFDEMYKRDLSAFPWNSLISGYAELGKYEDALALYFQM 722
                        SCG ++ AH +FD+M KRD SAFPWNSLISGYA++G Y++A+ALYFQM
Sbjct: 125  VGISSKLLRLYASCGYLDDAHDLFDQMAKRDTSAFPWNSLISGYAQVGHYDEAIALYFQM 184

Query: 721  EEEGVELDQFTFPRVLKACAGLGSIRVGEAVHRDIVRRGFVLDGFVLNALVDMYAKCGDI 542
             EEGVE D FTFPRVLK CAG+GS++VGE VHR  +R GF  DGF+LNALVDMY+KCGDI
Sbjct: 185  VEEGVEADLFTFPRVLKVCAGIGSVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDI 244

Query: 541  VMARKVFNKIGVRDSVSWNSMLTGYIHHGLMVEALDIFRGMIDDGFEPDSVAISTILSKF 362
            V ARKVF+K+  RD VSWNSMLT Y+HHGL V+A++IFR M+ +G EPDSV+IST+L+  
Sbjct: 245  VKARKVFDKMPHRDPVSWNSMLTAYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGV 304

Query: 361  SSSKVAFEVHAWVLRRGHEQSLSIANSLIALYSEQGKLDEACWLFDMMVDRDVVSWNAII 182
            SS  +  ++H WV+ +GHE +LSIANSLI +YS  G+L++A W+F++M +RDVVSWN+II
Sbjct: 305  SSLGLGVQIHGWVISQGHEWNLSIANSLIMMYSNHGRLEKARWVFNLMPERDVVSWNSII 364

Query: 181  SGHWKHSQALEYFNQMENSNILPDSVTFVSLLSICARLGLVEDGRELFVKMKNRYGIKP 5
            S H K  +AL +F QME + + PD +TFVS+LS CA LGL++DG  LF  M  +Y IKP
Sbjct: 365  SAHCKRREALAFFEQMEGAGVQPDKITFVSILSACAYLGLLKDGERLFALMCGKYKIKP 423