BLASTX nr result
ID: Coptis25_contig00017115
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00017115
(615 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002329317.1| predicted protein [Populus trichocarpa] gi|2... 105 6e-21
ref|XP_002278531.2| PREDICTED: putative nuclear matrix constitue... 100 4e-19
emb|CBI27082.3| unnamed protein product [Vitis vinifera] 100 4e-19
emb|CAN74873.1| hypothetical protein VITISV_038920 [Vitis vinifera] 100 4e-19
ref|XP_002525969.1| DNA double-strand break repair rad50 ATPase,... 97 3e-18
>ref|XP_002329317.1| predicted protein [Populus trichocarpa] gi|222870771|gb|EEF07902.1|
predicted protein [Populus trichocarpa]
Length = 1156
Score = 105 bits (262), Expect = 6e-21
Identities = 70/194 (36%), Positives = 107/194 (55%), Gaps = 4/194 (2%)
Frame = +1
Query: 1 ELKKKAVAMELKEVQLI-EEEKIRKIEQALEKVCRDIRRKR-DLQLEWRILKVREVTQN* 174
+LK K + +E +E ++ +EEK K EQAL+K + K + + + + LK RE
Sbjct: 381 DLKNKVIELEKRETEINHKEEKAAKREQALDKKLEKCKEKENEFESKSKSLKEREKAIRS 440
Query: 175 GEKTGAGEEKCFSDRGVAFFN**T**EK--GGH**ETTAVT*RVEKLKVTKDERNEFQRL 348
+K GE+ F N EK + + + E+LKV+++ER+E+ RL
Sbjct: 441 EQKNLEGEKNQLESAKENFLNLKAELEKTRASNEEQLLKIHEEKERLKVSEEERSEYARL 500
Query: 349 ELELAQEQGKCKIQEELLWNK*DTLKQNKKRFQRGWEMLDEKKVDFTPMLKLVNKEKEKF 528
+ EL +E KC++QEELL + D LKQ K F+R WE LDEK+ + LK ++++KEKF
Sbjct: 501 QAELKEEINKCRLQEELLLKEADDLKQQKGNFEREWEDLDEKRAEAEKELKSIHEQKEKF 560
Query: 529 VKLRLHNEESSRTK 570
K RL EE R +
Sbjct: 561 EKYRLSEEERIRNE 574
>ref|XP_002278531.2| PREDICTED: putative nuclear matrix constituent protein 1-like
protein-like [Vitis vinifera]
Length = 1213
Score = 99.8 bits (247), Expect = 4e-19
Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 4/189 (2%)
Frame = +1
Query: 1 ELKKKAVAMELKEVQLIE-EEKIRKIEQALEKVCRDIRRK-RDLQLEWRILKVREVTQN* 174
EL+ K +E KEV+++ EEK+ K EQALEK ++ K ++L+ + + LK +E +
Sbjct: 410 ELRSKVHEVEQKEVEVLHREEKLGKREQALEKRLERVKEKEKELEAKLKTLKEKEKSLKA 469
Query: 175 GEKTGAGEEK-CFSDR-GVAFFN**T**EKGGH**ETTAVT*RVEKLKVTKDERNEFQRL 348
EK GE+K +D+ + + + + E+LKVT++ER+E RL
Sbjct: 470 EEKRVEGEKKQMLADKESLHLLKDELEKIRADITEQELQIHEETERLKVTEEERSEHHRL 529
Query: 349 ELELAQEQGKCKIQEELLWNK*DTLKQNKKRFQRGWEMLDEKKVDFTPMLKLVNKEKEKF 528
+LEL QE KC+ QEE+L + + LKQ + F++ WE LDEK+ T ++ + EKEK
Sbjct: 530 QLELKQEIDKCRHQEEMLQKEREDLKQERIMFEKDWEALDEKRAVITKEMREIGDEKEKL 589
Query: 529 VKLRLHNEE 555
KL L EE
Sbjct: 590 EKLHLSEEE 598
>emb|CBI27082.3| unnamed protein product [Vitis vinifera]
Length = 1122
Score = 99.8 bits (247), Expect = 4e-19
Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 4/189 (2%)
Frame = +1
Query: 1 ELKKKAVAMELKEVQLIE-EEKIRKIEQALEKVCRDIRRK-RDLQLEWRILKVREVTQN* 174
EL+ K +E KEV+++ EEK+ K EQALEK ++ K ++L+ + + LK +E +
Sbjct: 410 ELRSKVHEVEQKEVEVLHREEKLGKREQALEKRLERVKEKEKELEAKLKTLKEKEKSLKA 469
Query: 175 GEKTGAGEEK-CFSDR-GVAFFN**T**EKGGH**ETTAVT*RVEKLKVTKDERNEFQRL 348
EK GE+K +D+ + + + + E+LKVT++ER+E RL
Sbjct: 470 EEKRVEGEKKQMLADKESLHLLKDELEKIRADITEQELQIHEETERLKVTEEERSEHHRL 529
Query: 349 ELELAQEQGKCKIQEELLWNK*DTLKQNKKRFQRGWEMLDEKKVDFTPMLKLVNKEKEKF 528
+LEL QE KC+ QEE+L + + LKQ + F++ WE LDEK+ T ++ + EKEK
Sbjct: 530 QLELKQEIDKCRHQEEMLQKEREDLKQERIMFEKDWEALDEKRAVITKEMREIGDEKEKL 589
Query: 529 VKLRLHNEE 555
KL L EE
Sbjct: 590 EKLHLSEEE 598
>emb|CAN74873.1| hypothetical protein VITISV_038920 [Vitis vinifera]
Length = 1234
Score = 99.8 bits (247), Expect = 4e-19
Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 4/189 (2%)
Frame = +1
Query: 1 ELKKKAVAMELKEVQLIE-EEKIRKIEQALEKVCRDIRRK-RDLQLEWRILKVREVTQN* 174
EL+ K +E KEV+++ EEK+ K EQALEK ++ K ++L+ + + LK +E +
Sbjct: 428 ELRSKVHEVEQKEVEVLHREEKLGKREQALEKRLERVKEKEKELEAKLKTLKEKEKSLKA 487
Query: 175 GEKTGAGEEK-CFSDR-GVAFFN**T**EKGGH**ETTAVT*RVEKLKVTKDERNEFQRL 348
EK GE+K +D+ + + + + E+LKVT++ER+E RL
Sbjct: 488 EEKRVEGEKKQMLADKESLHLLKDELEKIRADITEQELQIHEETERLKVTEEERSEHHRL 547
Query: 349 ELELAQEQGKCKIQEELLWNK*DTLKQNKKRFQRGWEMLDEKKVDFTPMLKLVNKEKEKF 528
+LEL QE KC+ QEE+L + + LKQ + F++ WE LDEK+ T ++ + EKEK
Sbjct: 548 QLELKQEIDKCRHQEEMLQKEREDLKQERIMFEKDWEALDEKRAVITKEMREIGDEKEKL 607
Query: 529 VKLRLHNEE 555
KL L EE
Sbjct: 608 EKLHLSEEE 616
>ref|XP_002525969.1| DNA double-strand break repair rad50 ATPase, putative [Ricinus
communis] gi|223534701|gb|EEF36393.1| DNA double-strand
break repair rad50 ATPase, putative [Ricinus communis]
Length = 1163
Score = 96.7 bits (239), Expect = 3e-18
Identities = 67/189 (35%), Positives = 106/189 (56%), Gaps = 4/189 (2%)
Frame = +1
Query: 1 ELKKKAVAMELKEVQLIE-EEKIRKIEQALEKVCRDIRRK-RDLQLEWRILKVREVTQN* 174
ELK K +E KE ++ E+K+ K EQAL+K ++ K ++ + + + LK +E T
Sbjct: 388 ELKNKVNEVEKKEAEIKHMEDKVLKREQALDKKLDKLKEKEKEFESKSKALKEKEKTIKS 447
Query: 175 GEKTGAGEEKCFSDRGVAFFN**T**EKGGH**ETTAVT*RVEK--LKVTKDERNEFQRL 348
EK E++ + F N EK E + R EK LKV ++ER E+ RL
Sbjct: 448 EEKNLENEKRQLNSDKENFLNLKAELEKIRAANEEQLLKIREEKDQLKVNEEERVEYVRL 507
Query: 349 ELELAQEQGKCKIQEELLWNK*DTLKQNKKRFQRGWEMLDEKKVDFTPMLKLVNKEKEKF 528
+ EL +E KC++QE+L + + LKQ K+ F+R W+ LDEK+V+ LK +++++EKF
Sbjct: 508 QSELKEEIEKCRLQEQLFLKEVEDLKQQKENFEREWDDLDEKRVEIEKQLKSISEQREKF 567
Query: 529 VKLRLHNEE 555
K + EE
Sbjct: 568 EKQKASEEE 576