BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017087
         (589 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]   111   8e-23
ref|XP_004167430.1| PREDICTED: pentatricopeptide repeat-containi...    86   5e-15
ref|XP_004146805.1| PREDICTED: pentatricopeptide repeat-containi...    86   5e-15
ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containi...    79   7e-13
ref|NP_173402.2| pentatricopeptide repeat-containing protein [Ar...    75   8e-12

>emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
          Length = 1009

 Score =  111 bits (278), Expect = 8e-23
 Identities = 67/183 (36%), Positives = 108/183 (59%), Gaps = 3/183 (1%)
 Frame = -3

Query: 542 NTFPATSIKLKYKVSARNVS--LEDKTELKKTHPDTHFTSLSRNDVYLRSHRVESKIKVE 369
           N FP    K K++VS   +       T     HP T   S      ++ +    S  ++ 
Sbjct: 33  NFFPLP--KSKFRVSTPRIIGFKHYSTVSNHIHPQTLLPS------FVDTLTNSSPTEIS 84

Query: 368 ELLTLLSHCTVNKQTHVLDSKKIHAQVVK-TGLELNAVVGNKVVMSYSRNAASLDDARKL 192
           + ++LL+ C+      + + ++IHA+VVK   L+  + +GNK+V+ Y +N  SL+DARKL
Sbjct: 85  DSISLLNRCST-----LSEFRQIHARVVKLNALKWKSSIGNKLVVLYCKNQWSLEDARKL 139

Query: 191 FDKITDRTVPAYSVLIGACCRAQRWEDVVFLVGLMVDEGLKPDKFLIPTVLKACSALEIL 12
            D+I +RTVPAY+ LI + CR+++W+++     LMV EG+ PDK+L+PT+LKACSA+ + 
Sbjct: 140 LDEIPNRTVPAYAALIRSYCRSEQWDELFSXFRLMVYEGMLPDKYLVPTILKACSAMLLX 199

Query: 11  GFG 3
             G
Sbjct: 200 RIG 202


>ref|XP_004167430.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like, partial [Cucumis sativus]
          Length = 406

 Score = 85.9 bits (211), Expect = 5e-15
 Identities = 41/99 (41%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
 Frame = -3

Query: 296 AQVVKTG-LELNAVVGNKVVMSYSRNAASLDDARKLFDKITDRTVPAYSVLIGACCRAQR 120
           AQVVK     ++ + G K+   Y ++   +D   K+FD+I +RT+PAY+ LI A CR+++
Sbjct: 89  AQVVKLNDCRVDNLFGKKLTKFYVKDVKCVDSDSKVFDEIPERTLPAYAALIRAYCRSEK 148

Query: 119 WEDVVFLVGLMVDEGLKPDKFLIPTVLKACSALEILGFG 3
           W ++      MVDEG+ PDK+L+PT+LKACS  +++  G
Sbjct: 149 WNELFAAFRSMVDEGILPDKYLVPTILKACSRRQMVKTG 187


>ref|XP_004146805.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Cucumis sativus]
          Length = 677

 Score = 85.9 bits (211), Expect = 5e-15
 Identities = 41/99 (41%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
 Frame = -3

Query: 296 AQVVKTG-LELNAVVGNKVVMSYSRNAASLDDARKLFDKITDRTVPAYSVLIGACCRAQR 120
           AQVVK     ++ + G K+   Y ++   +D   K+FD+I +RT+PAY+ LI A CR+++
Sbjct: 89  AQVVKLNDCRVDNLFGKKLTKFYVKDVKCVDSDSKVFDEIPERTLPAYAALIRAYCRSEK 148

Query: 119 WEDVVFLVGLMVDEGLKPDKFLIPTVLKACSALEILGFG 3
           W ++      MVDEG+ PDK+L+PT+LKACS  +++  G
Sbjct: 149 WNELFAAFRSMVDEGILPDKYLVPTILKACSRRQMVKTG 187


>ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Glycine max]
          Length = 945

 Score = 78.6 bits (192), Expect = 7e-13
 Identities = 56/179 (31%), Positives = 98/179 (54%), Gaps = 13/179 (7%)
 Frame = -3

Query: 527 TSIKLKYKVSARNVSLEDKTEL-KKTHP---DTHFTSLSRNDVYLRSHRV-------ESK 381
           +S +L++  S R ++  +   + +++HP   DT    L  N     +  +        SK
Sbjct: 22  SSTQLEWHGSTRALANSNSVSMTQRSHPKLVDTQLNQLCANGSLSEAVAILDSLAQQGSK 81

Query: 380 IKVEELLTLLSHCTVNKQTHVLDSKKIHAQVVKTGL--ELNAVVGNKVVMSYSRNAASLD 207
           ++    + LL  C ++K   +L  +++H ++   GL  ++N  V  K+V  Y++    LD
Sbjct: 82  VRPITFMNLLQAC-IDKDC-ILVGRELHTRI---GLVRKVNPFVETKLVSMYAK-CGHLD 135

Query: 206 DARKLFDKITDRTVPAYSVLIGACCRAQRWEDVVFLVGLMVDEGLKPDKFLIPTVLKAC 30
           +ARK+FD++ +R +  +S +IGAC R  +WE+VV L   M+  G+ PD FL+P VLKAC
Sbjct: 136 EARKVFDEMRERNLFTWSAMIGACSRDLKWEEVVELFYDMMQHGVLPDDFLLPKVLKAC 194


>ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g19720; AltName: Full=Protein DYW7
           gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein
           [Arabidopsis thaliana] gi|332191770|gb|AEE29891.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 894

 Score = 75.1 bits (183), Expect = 8e-12
 Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 9/175 (5%)
 Frame = -3

Query: 524 SIKLKYKVSARNVSLEDKTELKKTHPDTHFTSLSRNDVYLRSHRV-------ESKIKVEE 366
           S +L  K   +N+S   K E     PD  F  L RN   L + +         SK+K   
Sbjct: 25  SPELHPKSRKKNLSFTKKKE-PNIIPDEQFDYLCRNGSLLEAEKALDSLFQQGSKVKRST 83

Query: 365 LLTLLSHCTVNKQTHVLDSKKIHAQVVKTGL--ELNAVVGNKVVMSYSRNAASLDDARKL 192
            L LL  C  +   H+   + +HA+    GL  E +  V  K++  Y++    + DARK+
Sbjct: 84  YLKLLESCIDSGSIHL--GRILHARF---GLFTEPDVFVETKLLSMYAK-CGCIADARKV 137

Query: 191 FDKITDRTVPAYSVLIGACCRAQRWEDVVFLVGLMVDEGLKPDKFLIPTVLKACS 27
           FD + +R +  +S +IGA  R  RW +V  L  LM+ +G+ PD FL P +L+ C+
Sbjct: 138 FDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFLFPKILQGCA 192