BLASTX nr result

ID: Coptis25_contig00017086 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017086
         (1262 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN74602.1| hypothetical protein VITISV_028112 [Vitis vinifera]   371   e-100
emb|CBI34563.3| unnamed protein product [Vitis vinifera]              359   7e-97
ref|XP_002273163.2| PREDICTED: uncharacterized basic helix-loop-...   351   3e-94
ref|XP_002303679.1| predicted protein [Populus trichocarpa] gi|2...   319   1e-84
ref|XP_002299440.1| predicted protein [Populus trichocarpa] gi|2...   318   1e-84

>emb|CAN74602.1| hypothetical protein VITISV_028112 [Vitis vinifera]
          Length = 893

 Score =  371 bits (952), Expect = e-100
 Identities = 202/392 (51%), Positives = 257/392 (65%), Gaps = 6/392 (1%)
 Frame = -1

Query: 1247 ECWDDYTFXXXXXXXXXXXXXXSDCISDLDVGSTAGPQKGFLVDPRLEQLLDGVTCNTSD 1068
            E W+D+                S+CIS+LDVGS A P+KG   +  L+QLLD +  N+S 
Sbjct: 508  ESWEDFIMPLFNDGQSTLSTGVSECISELDVGSMAVPRKGLFSELGLDQLLDDIVGNSSS 567

Query: 1067 SGPSLQDRLSTLTKATMTATANVAGKVPLHNDQVHLEXXXXXXXXXXXXXSLPKYRVDKS 888
               S  +   + TK     +++V      +++QV                  P Y +DK+
Sbjct: 568  VTKSNSEDQFSSTKRRRLGSSSV------NSNQVQ-SAGLSSCFSGSMNVMQPVYNLDKT 620

Query: 887  SMKNNQKDNELKAHVGSWIDDSYSITNESAASTHTKRSEEKPKVARRKGQPRESTRPRPK 708
            +    +K+   K+ VG WIDDSYSI    + +   KR  E  K  +++ +P ESTRPRPK
Sbjct: 621  NSLVPKKEVIPKSQVGLWIDDSYSINAGGSVAAQPKRPVEPAKATKKRAKPGESTRPRPK 680

Query: 707  DRQQIQDRVKELREIVPSSAKCSIDALLDRTIKHMLFLQSVTKHADIIKLVDEPKIIGNE 528
            DRQQI+DR++ELR I+P+ +KCSID LLDR+IKHMLFLQSVTK+AD +K VDEPK+IG+E
Sbjct: 681  DRQQIKDRLEELRGIIPNGSKCSIDVLLDRSIKHMLFLQSVTKYADKLKQVDEPKLIGHE 740

Query: 527  NGVILKDNSSGG------GATWAFEVGGQTMVCPIIVEDMNPPGQMLVEMLCEERGYFLE 366
            NGV+LKDNSSGG      GATWAFEV GQTMVCPI VED+NPPGQML+EMLCEE+G+FLE
Sbjct: 741  NGVVLKDNSSGGSGNSGGGATWAFEVSGQTMVCPIRVEDLNPPGQMLIEMLCEEQGFFLE 800

Query: 365  IADTIRGFGLTILKGVMEVREDKIWARFIVETNRTITRMEIFLSXXXXXXXXXTSGISPK 186
            IAD IR FGL ILKGVMEVRE+KIWARFIVE NR +TRM+IFLS         T+G+SP 
Sbjct: 801  IADIIRSFGLNILKGVMEVRENKIWARFIVEANRHVTRMDIFLSLVQLLQETATTGVSPT 860

Query: 185  NQLSMGAEGGVPMFTNYHQSPITVPVGVADQL 90
            NQ S   + GVP F NY Q    +P+ +A+ L
Sbjct: 861  NQPSNVIDSGVPPFNNYQQPSGPLPISLAETL 892


>emb|CBI34563.3| unnamed protein product [Vitis vinifera]
          Length = 868

 Score =  359 bits (922), Expect = 7e-97
 Identities = 199/399 (49%), Positives = 250/399 (62%), Gaps = 13/399 (3%)
 Frame = -1

Query: 1247 ECWDDYTFXXXXXXXXXXXXXXSDCISDLDVGSTAGPQKGFLVDPRLEQLLDGVTCNTSD 1068
            E W+D+                S+CIS+LDVGS A P+KG   +  L+QLLD +  N+S 
Sbjct: 508  ESWEDFIMPLFNDGQSTLSTGVSECISELDVGSMAVPRKGLFSELGLDQLLDDIVGNSSS 567

Query: 1067 SGPSLQDRLSTLTKATMTATANVAGKVPLHNDQVHLEXXXXXXXXXXXXXSLPKYRVDKS 888
               S  +   + TK                                       + R+  S
Sbjct: 568  VTKSNSEDQFSSTK---------------------------------------RRRLGSS 588

Query: 887  SMKNNQKDNEL-------KAHVGSWIDDSYSITNESAASTHTKRSEEKPKVARRKGQPRE 729
            S+ +NQ ++ +       K+ VG WIDDSYSI    + +   KR  E  K  +++ +P E
Sbjct: 589  SVNSNQTNSLVPKKEVIPKSQVGLWIDDSYSINAGGSVAAQPKRPVEPAKATKKRAKPGE 648

Query: 728  STRPRPKDRQQIQDRVKELREIVPSSAKCSIDALLDRTIKHMLFLQSVTKHADIIKLVDE 549
            STRPRPKDRQQI+DR++ELR I+P+ +KCSID LLDR+IKHMLFLQSVTK+AD +K VDE
Sbjct: 649  STRPRPKDRQQIKDRLEELRGIIPNGSKCSIDVLLDRSIKHMLFLQSVTKYADKLKQVDE 708

Query: 548  PKIIGNENGVILKDNSSGG------GATWAFEVGGQTMVCPIIVEDMNPPGQMLVEMLCE 387
            PK+IG+ENGV+LKDNSSGG      GATWAFEV GQTMVCPI VED+NPPGQML+EMLCE
Sbjct: 709  PKLIGHENGVVLKDNSSGGSGNSGGGATWAFEVSGQTMVCPIRVEDLNPPGQMLIEMLCE 768

Query: 386  ERGYFLEIADTIRGFGLTILKGVMEVREDKIWARFIVETNRTITRMEIFLSXXXXXXXXX 207
            E+G+FLEIAD IR FGL ILKGVMEVRE+KIWARFIVE NR +TRM+IFLS         
Sbjct: 769  EQGFFLEIADIIRSFGLNILKGVMEVRENKIWARFIVEANRHVTRMDIFLSLVQLLQETA 828

Query: 206  TSGISPKNQLSMGAEGGVPMFTNYHQSPITVPVGVADQL 90
            T+G+SP NQ S   + GVP F NY Q    +P+ +A+ L
Sbjct: 829  TTGVSPTNQPSNVIDSGVPPFNNYQQPSGPLPISLAETL 867


>ref|XP_002273163.2| PREDICTED: uncharacterized basic helix-loop-helix protein
            At1g64625-like [Vitis vinifera]
          Length = 858

 Score =  351 bits (900), Expect = 3e-94
 Identities = 193/386 (50%), Positives = 247/386 (63%)
 Frame = -1

Query: 1247 ECWDDYTFXXXXXXXXXXXXXXSDCISDLDVGSTAGPQKGFLVDPRLEQLLDGVTCNTSD 1068
            E W+D+                S+CIS+LDVGS A P+KG   +  L+QLLD +  N+S 
Sbjct: 487  ESWEDFIMPLFNDGQSTLSTGVSECISELDVGSMAVPRKGLFSELGLDQLLDDIVGNSSS 546

Query: 1067 SGPSLQDRLSTLTKATMTATANVAGKVPLHNDQVHLEXXXXXXXXXXXXXSLPKYRVDKS 888
               S  +   + TK     +++V      +++QV                  P Y +DK+
Sbjct: 547  VTKSNSEDQFSSTKRRRLGSSSV------NSNQVQ-SAGLSSCFSGSMNVMQPVYNLDKT 599

Query: 887  SMKNNQKDNELKAHVGSWIDDSYSITNESAASTHTKRSEEKPKVARRKGQPRESTRPRPK 708
            +    +K+   K+ VG WIDDSYSI    + +   KR  E  K  +++ +P ESTRPRPK
Sbjct: 600  NSLVPKKEVIPKSQVGLWIDDSYSINAGGSVAAQPKRPVEPAKATKKRAKPGESTRPRPK 659

Query: 707  DRQQIQDRVKELREIVPSSAKCSIDALLDRTIKHMLFLQSVTKHADIIKLVDEPKIIGNE 528
            DRQQI+DR++ELR I+P+ +KCSID LLDR+IKHMLFLQSVTK+AD +K VDEPK+I + 
Sbjct: 660  DRQQIKDRLEELRGIIPNGSKCSIDVLLDRSIKHMLFLQSVTKYADKLKQVDEPKVINHG 719

Query: 527  NGVILKDNSSGGGATWAFEVGGQTMVCPIIVEDMNPPGQMLVEMLCEERGYFLEIADTIR 348
            N        SGGGATWAFEV GQTMVCPI VED+NPPGQML+EMLCEE+G+FLEIAD IR
Sbjct: 720  N--------SGGGATWAFEVSGQTMVCPIRVEDLNPPGQMLIEMLCEEQGFFLEIADIIR 771

Query: 347  GFGLTILKGVMEVREDKIWARFIVETNRTITRMEIFLSXXXXXXXXXTSGISPKNQLSMG 168
             FGL ILKGVMEVRE+KIWARFIVE NR +TRM+IFLS         T+G+SP NQ S  
Sbjct: 772  SFGLNILKGVMEVRENKIWARFIVEANRHVTRMDIFLSLVQLLQETATTGVSPTNQPSNV 831

Query: 167  AEGGVPMFTNYHQSPITVPVGVADQL 90
             + GVP F NY Q    +P+ +A+ L
Sbjct: 832  IDSGVPPFNNYQQPSGPLPISLAETL 857


>ref|XP_002303679.1| predicted protein [Populus trichocarpa] gi|222841111|gb|EEE78658.1|
            predicted protein [Populus trichocarpa]
          Length = 831

 Score =  319 bits (817), Expect = 1e-84
 Identities = 180/400 (45%), Positives = 235/400 (58%), Gaps = 10/400 (2%)
 Frame = -1

Query: 1259 GQRLECWDDYTFXXXXXXXXXXXXXXSDCISDLDVGSTAGPQKGFLVDPRLEQLLDGVTC 1080
            GQ   CW+D                 S+CIS+LDV S  GP+KG        +LLD V+ 
Sbjct: 446  GQARHCWEDIMVPVASSGHTTASTGISECISELDVDSKVGPRKGLF-----SELLDSVSN 500

Query: 1079 NTSDSGPSLQDRLSTLTKATMTATANVAGKVPLHNDQVHLEXXXXXXXXXXXXXSLPKYR 900
            +   +  S  D+LS   +  +  ++    ++ L N                     P Y 
Sbjct: 501  SNYVTKSSSDDQLSNAKRRRVENSSVNGNQLQLVNASCPTSSRVMQ----------PAYN 550

Query: 899  VDKSSMKNNQKDNELKAHVGSWIDDSYSITNESAASTHTKRSEEKPKVARRKGQPRESTR 720
             DK+    ++++   KA    WIDDSYS+   S+  T +K+ EE  K  +++ +P ESTR
Sbjct: 551  FDKTKNLLSKQEMFPKAQTVLWIDDSYSVNTGSSGLTKSKKPEEPAKANKKRARPGESTR 610

Query: 719  PRPKDRQQIQDRVKELREIVPSSAKCSIDALLDRTIKHMLFLQSVTKHADIIKLVDEPKI 540
            PRPKDRQQIQDR+KEL++I+P  AKCSIDALLDRTIKHMLFLQSVTK+A+ +K  DEPK+
Sbjct: 611  PRPKDRQQIQDRIKELKQIIPDGAKCSIDALLDRTIKHMLFLQSVTKYAEKLKQADEPKL 670

Query: 539  IGNENGVILKDNS-SGGGATWAFEVGGQTMVCPIIVEDMNPPGQMLVEMLCEERGYFLEI 363
            IG  N ++ KDNS S GGATWA EV  Q+MVCPIIVED++ PG ML+EMLCE+RG+FLEI
Sbjct: 671  IGQHNRLLPKDNSTSSGGATWALEVADQSMVCPIIVEDLSQPGLMLIEMLCEDRGFFLEI 730

Query: 362  ADTIRGFGLTILKGVMEVREDKIWARFIVE---------TNRTITRMEIFLSXXXXXXXX 210
            AD I+GFGL ILKG+ME REDKIWARFIVE          N  ITR+E+F S        
Sbjct: 731  ADVIKGFGLNILKGLMESREDKIWARFIVEVAHQNLDFKANMQITRVEVFWSLLQLLERT 790

Query: 209  XTSGISPKNQLSMGAEGGVPMFTNYHQSPITVPVGVADQL 90
              S +   NQ S    G +P   +Y    +  PV + + +
Sbjct: 791  GASVMDSTNQPSNVMHGRIPELNSYQLPALPCPVSLTETI 830


>ref|XP_002299440.1| predicted protein [Populus trichocarpa] gi|222846698|gb|EEE84245.1|
            predicted protein [Populus trichocarpa]
          Length = 446

 Score =  318 bits (816), Expect = 1e-84
 Identities = 179/391 (45%), Positives = 239/391 (61%), Gaps = 1/391 (0%)
 Frame = -1

Query: 1259 GQRLECWDDYTFXXXXXXXXXXXXXXSDCISDLDVGSTAGPQKGFLVDPRLEQLLDGVTC 1080
            GQ   CW+D                 S+CIS+LDVGS  GPQKG   +  LE+LLD V+ 
Sbjct: 72   GQTGHCWEDMMMPVARSGQITASTGVSECISELDVGSKVGPQKGLFSELGLEELLDSVSN 131

Query: 1079 NTSDSGPSLQDRLSTLTKATMTATANVAGKVPLHNDQVHLEXXXXXXXXXXXXXSLPKYR 900
            ++  +  S+ D+LS   +  +  +   + K+ L N                     P Y 
Sbjct: 132  SSYVTKYSIDDQLSNAKRRRVENSLVSSDKLQLVNASYPTSSRMMQ----------PAYN 181

Query: 899  VDKSSMKNNQKDNELKAHVGSWIDDSYSITNESAASTHTKRSEEKPKVARRKGQPRESTR 720
            +DK+    ++++   K+ V  WIDDSYS+   +  S+   + EE  K  +++ +P ESTR
Sbjct: 182  LDKTKNLPSKQEVFPKSQVSLWIDDSYSV---NTGSSGLPKPEELAKPTKKRARPGESTR 238

Query: 719  PRPKDRQQIQDRVKELREIVPSSAKCSIDALLDRTIKHMLFLQSVTKHADIIKLVDEPKI 540
            PRPKDRQQIQDR+KEL++I+P  AKCSIDALLDRTIKHMLFLQSVTK+A+ +K  DEPK 
Sbjct: 239  PRPKDRQQIQDRIKELKQIIPDGAKCSIDALLDRTIKHMLFLQSVTKYAERLKQADEPK- 297

Query: 539  IGNENGVILKDNS-SGGGATWAFEVGGQTMVCPIIVEDMNPPGQMLVEMLCEERGYFLEI 363
               EN ++LKDN+ S GGATWA EV  Q+MVCPIIVED++ PG ML+EMLCE+RG+FLE 
Sbjct: 298  ---ENRLLLKDNTTSSGGATWALEVADQSMVCPIIVEDLSQPGLMLIEMLCEDRGFFLET 354

Query: 362  ADTIRGFGLTILKGVMEVREDKIWARFIVETNRTITRMEIFLSXXXXXXXXXTSGISPKN 183
            AD I+GFGL ILKG+ME RE+KIWARFIVE N  ITR+E+F           TS +    
Sbjct: 355  ADVIKGFGLNILKGLMESRENKIWARFIVEANVHITRVEVFWYLLQLLERTGTSVMDSTK 414

Query: 182  QLSMGAEGGVPMFTNYHQSPITVPVGVADQL 90
            Q S    G +P  ++Y    +  PV + + +
Sbjct: 415  QPSNSMHGRIPELSSYQLPALPCPVSLTETI 445


Top