BLASTX nr result
ID: Coptis25_contig00017029
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00017029
(1883 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera] 263 9e-68
ref|XP_002275052.2| PREDICTED: double-stranded RNA-binding prote... 261 6e-67
emb|CBI21312.3| unnamed protein product [Vitis vinifera] 261 6e-67
ref|XP_002298650.1| predicted protein [Populus trichocarpa] gi|2... 260 1e-66
ref|XP_002512890.1| double-stranded RNA binding protein, putativ... 259 1e-66
>emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]
Length = 552
Score = 263 bits (673), Expect = 9e-68
Identities = 129/149 (86%), Positives = 137/149 (91%)
Frame = -2
Query: 1750 SGFVGMYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEVFEGPSYCTTLRQ 1571
+G V M+KNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGE+FE PSYCTTLRQ
Sbjct: 67 TGEVDMFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQ 126
Query: 1570 AEHAAAEVALSSLSTRGPSRLLAARVLDEIGVYKNLLQETAHRAGLDLPVYITERSGPGH 1391
AEHAAAEVAL+ LSTRGPSR L ARVLDE GVYKNLLQETAHRAGL+LPVY T RSGPGH
Sbjct: 127 AEHAAAEVALNVLSTRGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGH 186
Query: 1390 LPVFTSIVELAGLNFTGEPARTKKQAEKN 1304
+PVFT VELAG+NFTGE A+TKKQAEKN
Sbjct: 187 VPVFTCTVELAGMNFTGESAKTKKQAEKN 215
Score = 124 bits (311), Expect = 9e-26
Identities = 106/311 (34%), Positives = 143/311 (45%), Gaps = 38/311 (12%)
Frame = -3
Query: 1116 LVVARVLSKFSAKRENRTLRHRNQSQVRKRLILDH----------RVLQHQQWRTMGLXX 967
+VVARVLS F +K E+R +R +Q+Q R+R++ H Q Q+WR M L
Sbjct: 247 VVVARVLSNFRSKDESRPIRRWDQNQARRRMVRGHGGSGSSSTSNNSQQFQKWRPMDLLM 306
Query: 966 XXXXXXSIQQR----TALLPRAXXXXXXXXXXXXXTDESNYSSLCSPNKGIPVQVKSNSL 799
Q ALLP ++ SL + IPVQ S
Sbjct: 307 DSVPEGGTAQNQNCFVALLPPPPPRTASKILPPISPRDT--LSLYPSTRPIPVQAIGRSQ 364
Query: 798 AMKQDIAPPLEEHQKDEDEWLCKKAIITEKPTGKD-PNNANPNSVFRQQPKYLSPF---- 634
++ LEEHQ+DE+EWL K+ + KPT K+ P+NAN +SV+ Y PF
Sbjct: 365 VKMPEVPTLLEEHQRDEEEWLDGKSNLIRKPTEKECPSNANASSVYGANSIY-RPFPLPN 423
Query: 633 ----NSSFLD-----HTQQNIHPRPYRPATSMGIRTNGSNATTSQRMLNSGGFHVHNIAP 481
N+S D H Q +I P+ T ++ GS R + +GGF H IAP
Sbjct: 424 AGKLNTSLPDSPHQPHEQTHIKNNPFGNPTPSAMK--GSAGIHIPRTMGTGGFQPHRIAP 481
Query: 480 AVHIRSVIPVCAT--PPMRPPSSNSPIAPQ------KKQDLIPSVSDTVLKQAEQEVPTA 325
AV IRSVIPVCA PPMR P SN P + IP+ + LK + E+ +
Sbjct: 482 AVQIRSVIPVCAAPPPPMRLPPSNHPTRNEASPSALSASSSIPAHTGAGLKFNKPELYST 541
Query: 324 --SSKLNSLHL 298
SS+ N L L
Sbjct: 542 QLSSEFNKLQL 552
Score = 57.8 bits (138), Expect = 1e-05
Identities = 33/69 (47%), Positives = 39/69 (56%)
Frame = -2
Query: 1738 GMYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEVFEGPSYCTTLRQAEHA 1559
G+YKN LQE A R+ NLP Y +R GP H P F +V G F G S T +QAE
Sbjct: 157 GVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGES-AKTKKQAEKN 215
Query: 1558 AAEVALSSL 1532
AA A S+L
Sbjct: 216 AAIAAWSAL 224
>ref|XP_002275052.2| PREDICTED: double-stranded RNA-binding protein 5 [Vitis vinifera]
Length = 484
Score = 261 bits (666), Expect = 6e-67
Identities = 127/144 (88%), Positives = 134/144 (93%)
Frame = -2
Query: 1735 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEVFEGPSYCTTLRQAEHAA 1556
M+KNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGE+FE PSYCTTLRQAEHAA
Sbjct: 4 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 63
Query: 1555 AEVALSSLSTRGPSRLLAARVLDEIGVYKNLLQETAHRAGLDLPVYITERSGPGHLPVFT 1376
AEVAL+ LSTRGPSR L ARVLDE GVYKNLLQETAHRAGL+LPVY T RSGPGH+PVFT
Sbjct: 64 AEVALNVLSTRGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 123
Query: 1375 SIVELAGLNFTGEPARTKKQAEKN 1304
VELAG+NFTGE A+TKKQAEKN
Sbjct: 124 CTVELAGMNFTGESAKTKKQAEKN 147
Score = 124 bits (311), Expect = 9e-26
Identities = 106/311 (34%), Positives = 143/311 (45%), Gaps = 38/311 (12%)
Frame = -3
Query: 1116 LVVARVLSKFSAKRENRTLRHRNQSQVRKRLILDH----------RVLQHQQWRTMGLXX 967
+VVARVLS F +K E+R +R +Q+Q R+R++ H Q Q+WR M L
Sbjct: 179 VVVARVLSNFRSKDESRPIRRWDQNQARRRMVRGHGGSGSSSTSNNSQQFQKWRPMDLLM 238
Query: 966 XXXXXXSIQQR----TALLPRAXXXXXXXXXXXXXTDESNYSSLCSPNKGIPVQVKSNSL 799
Q ALLP ++ SL + IPVQ S
Sbjct: 239 DSVPEGGTAQNQNCFVALLPPPPPRTASKILPPISPRDT--LSLYPSTRPIPVQAIGRSQ 296
Query: 798 AMKQDIAPPLEEHQKDEDEWLCKKAIITEKPTGKD-PNNANPNSVFRQQPKYLSPF---- 634
++ LEEHQ+DE+EWL K+ + KPT K+ P+NAN +SV+ Y PF
Sbjct: 297 VKMPEVPTLLEEHQRDEEEWLDGKSNLIRKPTEKECPSNANASSVYGANSIY-RPFPLPN 355
Query: 633 ----NSSFLD-----HTQQNIHPRPYRPATSMGIRTNGSNATTSQRMLNSGGFHVHNIAP 481
N+S D H Q +I P+ T ++ GS R + +GGF H IAP
Sbjct: 356 AGKLNTSLPDSPHQPHEQTHIKNNPFGNPTPSAMK--GSAGIHIPRTMGTGGFQPHRIAP 413
Query: 480 AVHIRSVIPVCAT--PPMRPPSSNSPIAPQ------KKQDLIPSVSDTVLKQAEQEVPTA 325
AV IRSVIPVCA PPMR P SN P + IP+ + LK + E+ +
Sbjct: 414 AVQIRSVIPVCAAPPPPMRLPPSNHPTRNEASPSALSASSSIPAHTGAGLKFNKPELYST 473
Query: 324 --SSKLNSLHL 298
SS+ N L L
Sbjct: 474 QLSSEFNKLQL 484
Score = 57.8 bits (138), Expect = 1e-05
Identities = 33/69 (47%), Positives = 39/69 (56%)
Frame = -2
Query: 1738 GMYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEVFEGPSYCTTLRQAEHA 1559
G+YKN LQE A R+ NLP Y +R GP H P F +V G F G S T +QAE
Sbjct: 89 GVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGES-AKTKKQAEKN 147
Query: 1558 AAEVALSSL 1532
AA A S+L
Sbjct: 148 AAIAAWSAL 156
>emb|CBI21312.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 261 bits (666), Expect = 6e-67
Identities = 127/144 (88%), Positives = 134/144 (93%)
Frame = -2
Query: 1735 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEVFEGPSYCTTLRQAEHAA 1556
M+KNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGE+FE PSYCTTLRQAEHAA
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 1555 AEVALSSLSTRGPSRLLAARVLDEIGVYKNLLQETAHRAGLDLPVYITERSGPGHLPVFT 1376
AEVAL+ LSTRGPSR L ARVLDE GVYKNLLQETAHRAGL+LPVY T RSGPGH+PVFT
Sbjct: 61 AEVALNVLSTRGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 120
Query: 1375 SIVELAGLNFTGEPARTKKQAEKN 1304
VELAG+NFTGE A+TKKQAEKN
Sbjct: 121 CTVELAGMNFTGESAKTKKQAEKN 144
Score = 124 bits (311), Expect = 9e-26
Identities = 106/311 (34%), Positives = 143/311 (45%), Gaps = 38/311 (12%)
Frame = -3
Query: 1116 LVVARVLSKFSAKRENRTLRHRNQSQVRKRLILDH----------RVLQHQQWRTMGLXX 967
+VVARVLS F +K E+R +R +Q+Q R+R++ H Q Q+WR M L
Sbjct: 176 VVVARVLSNFRSKDESRPIRRWDQNQARRRMVRGHGGSGSSSTSNNSQQFQKWRPMDLLM 235
Query: 966 XXXXXXSIQQR----TALLPRAXXXXXXXXXXXXXTDESNYSSLCSPNKGIPVQVKSNSL 799
Q ALLP ++ SL + IPVQ S
Sbjct: 236 DSVPEGGTAQNQNCFVALLPPPPPRTASKILPPISPRDT--LSLYPSTRPIPVQAIGRSQ 293
Query: 798 AMKQDIAPPLEEHQKDEDEWLCKKAIITEKPTGKD-PNNANPNSVFRQQPKYLSPF---- 634
++ LEEHQ+DE+EWL K+ + KPT K+ P+NAN +SV+ Y PF
Sbjct: 294 VKMPEVPTLLEEHQRDEEEWLDGKSNLIRKPTEKECPSNANASSVYGANSIY-RPFPLPN 352
Query: 633 ----NSSFLD-----HTQQNIHPRPYRPATSMGIRTNGSNATTSQRMLNSGGFHVHNIAP 481
N+S D H Q +I P+ T ++ GS R + +GGF H IAP
Sbjct: 353 AGKLNTSLPDSPHQPHEQTHIKNNPFGNPTPSAMK--GSAGIHIPRTMGTGGFQPHRIAP 410
Query: 480 AVHIRSVIPVCAT--PPMRPPSSNSPIAPQ------KKQDLIPSVSDTVLKQAEQEVPTA 325
AV IRSVIPVCA PPMR P SN P + IP+ + LK + E+ +
Sbjct: 411 AVQIRSVIPVCAAPPPPMRLPPSNHPTRNEASPSALSASSSIPAHTGAGLKFNKPELYST 470
Query: 324 --SSKLNSLHL 298
SS+ N L L
Sbjct: 471 QLSSEFNKLQL 481
Score = 57.8 bits (138), Expect = 1e-05
Identities = 33/69 (47%), Positives = 39/69 (56%)
Frame = -2
Query: 1738 GMYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEVFEGPSYCTTLRQAEHA 1559
G+YKN LQE A R+ NLP Y +R GP H P F +V G F G S T +QAE
Sbjct: 86 GVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGES-AKTKKQAEKN 144
Query: 1558 AAEVALSSL 1532
AA A S+L
Sbjct: 145 AAIAAWSAL 153
>ref|XP_002298650.1| predicted protein [Populus trichocarpa] gi|222845908|gb|EEE83455.1|
predicted protein [Populus trichocarpa]
Length = 357
Score = 260 bits (664), Expect = 1e-66
Identities = 125/144 (86%), Positives = 134/144 (93%)
Frame = -2
Query: 1735 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEVFEGPSYCTTLRQAEHAA 1556
M+KNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGE+FE PSYCTTLRQAEHAA
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 1555 AEVALSSLSTRGPSRLLAARVLDEIGVYKNLLQETAHRAGLDLPVYITERSGPGHLPVFT 1376
AEVAL+ LS RGP+R L ARVLDE G+YKNLLQETAHRAGL+LPVY T RSGPGH+PVFT
Sbjct: 61 AEVALNVLSLRGPARSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 120
Query: 1375 SIVELAGLNFTGEPARTKKQAEKN 1304
VELAG+NFTGEPA+TKKQAEKN
Sbjct: 121 CTVELAGMNFTGEPAKTKKQAEKN 144
>ref|XP_002512890.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223547901|gb|EEF49393.1| double-stranded RNA binding
protein, putative [Ricinus communis]
Length = 477
Score = 259 bits (663), Expect = 1e-66
Identities = 124/144 (86%), Positives = 134/144 (93%)
Frame = -2
Query: 1735 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEVFEGPSYCTTLRQAEHAA 1556
M+KNQLQELAQRSCFNLPSYAC+REGPDHAPRFKASVNFNGE+FE PSYCTTLRQAEHAA
Sbjct: 4 MFKNQLQELAQRSCFNLPSYACVREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 63
Query: 1555 AEVALSSLSTRGPSRLLAARVLDEIGVYKNLLQETAHRAGLDLPVYITERSGPGHLPVFT 1376
AEVAL+ LS+RGPSR L ARVLDE G+YKNLLQETAHRAGL+LPVY T RSGPGH+P FT
Sbjct: 64 AEVALNVLSSRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTIRSGPGHVPTFT 123
Query: 1375 SIVELAGLNFTGEPARTKKQAEKN 1304
VELAG+NFTGEPA+TKKQAEKN
Sbjct: 124 CTVELAGMNFTGEPAKTKKQAEKN 147
Score = 77.8 bits (190), Expect = 9e-12
Identities = 79/261 (30%), Positives = 118/261 (45%), Gaps = 26/261 (9%)
Frame = -3
Query: 1113 VVARVLSKFSAKRE-NRTLRHRNQSQVRKRLILDHR---------------VLQHQQWRT 982
VVARVLS F +K E N+ R ++ SQ R+RL+ +R L +Q +
Sbjct: 181 VVARVLSNFRSKDEYNKQARKKDCSQARRRLVKGYRDYSSASSSSSSTSSNSLHYQHRKL 240
Query: 981 MGLXXXXXXXXSIQQRT---ALLPRAXXXXXXXXXXXXXTDESNY---SSLCSPNKGIPV 820
+ L S Q+++ +LLP ++ Y SS C+P++ +
Sbjct: 241 LDLLLDSALDSSTQKQSSFVSLLPPPPPRTTSKILPPTSPIDNPYSYPSSRCNPHQ---I 297
Query: 819 QVKSNSLAMKQDIAPPLEEHQKDEDEW--LCKKAIITEKPTGKDPNNANPNSVFRQQPKY 646
QVK + +EEHQKDE+EW KK+I E + + +S++RQ P
Sbjct: 298 QVKGKQQTKE------IEEHQKDEEEWPGAIKKSIEKESSSS---SVYGSSSLYRQFPH- 347
Query: 645 LSPFNSSFLDHTQQNIHPRPYRPATSMGIRTNGSNATTSQRMLNSGGFHVHNIAPAVHIR 466
+ +I R + P+++ T S S SG + H IAPAV IR
Sbjct: 348 ---------QESTSHIGNRIFGPSSTSIKSTPSSIHMCSNSPFYSGMLYPHRIAPAVQIR 398
Query: 465 SVIPVCATPP--MRPPSSNSP 409
SVIPVCA PP +RP + +P
Sbjct: 399 SVIPVCAAPPAAVRPAPAPAP 419