BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017015
         (899 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...   167   3e-39
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...   132   1e-28
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   128   2e-27
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...   128   2e-27
dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like ...   126   8e-27

>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score =  167 bits (423), Expect = 3e-39
 Identities = 76/201 (37%), Positives = 122/201 (60%), Gaps = 2/201 (0%)
 Frame = -1

Query: 626 FILPQRVIDELNRMCRNFLWVGPDGGNSHALISWEDVCYPYEEGGLGVRCLATTNRAANL 447
           F+LP +VI  + ++ ++FLW G D   + A ++W+ VC P +EGGLG++ +   N+ A L
Sbjct: 116 FLLPGQVIKNVEQIMKSFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGIKSIKEWNKIALL 175

Query: 446 RHIWHITSKKD-TLWVHWVQKNLIKGRNFWSLKIPSDCSWSWKNILKDRVEARAIAMHLI 270
           +HIW++ +  D ++W  W++ NL++GRNFW++K P +CSW+W  ILK R  A     ++I
Sbjct: 176 KHIWNLCNDSDGSIWSTWIRSNLLRGRNFWTIKTPQNCSWAWGKILKLRSLAWPKMKYII 235

Query: 269 GNGENTSLWYDPWHPTGILAGKFDMVLLYDSVCNKRAKVSSFIEDGQWHIPQQFKNHYPE 90
           G+G  TSLW+D WHP   LA  +    +YDS   K AKV+  I++ +W  P      +  
Sbjct: 236 GDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTTQAIGWHP 295

Query: 89  LVQGIEEEVEIHTGE-DEVVW 30
           +++ I        G+ DE+VW
Sbjct: 296 IIEAIPSNSNPKMGQKDELVW 316


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score =  132 bits (332), Expect = 1e-28
 Identities = 63/150 (42%), Positives = 86/150 (57%), Gaps = 6/150 (4%)
 Frame = -1

Query: 626 FILPQRVIDELNRMCRNFLWVGPDGGNSHALISWEDVCYPYEEGGLGVRCLATTNRAANL 447
           F LP+  + E++++C  FLW GP+   + A I+WE VC P  EGGLG++ +   N    L
Sbjct: 347 FRLPRECVREIDKLCSAFLWSGPELSTNKAKIAWETVCRPKREGGLGLQSIKEANDVCCL 406

Query: 446 RHIWHITSKKDTLWVHWVQKNLIKGRNFWSLKIPSDCSWSWKNILKDRVEARAIAMHLIG 267
           + IW I S+ D+LWV W++  L+K   FWS +  S  SW WK +LK R  A+A +   I 
Sbjct: 407 KLIWRIVSQGDSLWVQWIRTYLLKRNTFWSFRSASQGSWMWKKLLKYRDTAKAFSKVDIR 466

Query: 266 NGENTSLWYDPWHPTGIL------AGKFDM 195
           NGE  S WYD W   G L       G+FDM
Sbjct: 467 NGETASFWYDDWSSKGRLIDVLGERGQFDM 496


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  128 bits (322), Expect = 2e-27
 Identities = 73/205 (35%), Positives = 110/205 (53%), Gaps = 6/205 (2%)
 Frame = -1

Query: 626  FILPQRVIDELNRMCRNFLWVGPDGGNSHALISWEDVCYPYEEGGLGVRCLATTNRAANL 447
            F LP++ I EL +MC  FLW G +  ++ A ISW  VC P +EGGLG+R L   N    L
Sbjct: 829  FRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCL 888

Query: 446  RHIWHITSKKDTLWVHWVQKNLIKGRNFWSLK-IPSDCSWSWKNILKDRVEARAIAMHLI 270
            + +W I S  ++LWV WV ++L++  +FW +K   S  SW WK +LK R  A+ ++   +
Sbjct: 889  KLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEV 948

Query: 269  GNGENTSLWYDPWHPTGILAGKFDMVLLYDSVCNKRAKVSSFIEDGQWHIPQQFKNHYPE 90
            GNG+ TS WYD W   G L  +     L D   ++R  V     +  W   +Q + H  +
Sbjct: 949  GNGKQTSFWYDNWSDLGQLLERTGDRGLIDLGISRRMTV-----EEAWTNRRQ-RRHRND 1002

Query: 89   LVQGIEEEVEIH-----TGEDEVVW 30
            +   IE+ ++         ED+V+W
Sbjct: 1003 VYNVIEDALKKSWDTRTETEDKVLW 1027


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  128 bits (321), Expect = 2e-27
 Identities = 60/139 (43%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
 Frame = -1

Query: 626 FILPQRVIDELNRMCRNFLWVGPDGGNSHALISWEDVCYPYEEGGLGVRCLATTNRAANL 447
           F LP   + E+N +C  FLW GP+     A +SW+D+C P +EGGLG+R L   N  + L
Sbjct: 234 FRLPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGGLGLRSLTEANVVSVL 293

Query: 446 RHIWHITSKKDTLWVHWVQKNLIKGRNFWSLKIPSDC-SWSWKNILKDRVEARAIAMHLI 270
           + IW +TS  D+LWV W + NL+K  +FWSL   S   SW WK +LK R  A+  +   +
Sbjct: 294 KLIWRVTSNDDSLWVKWSKMNLLKQESFWSLTPNSSLGSWMWKKMLKYRETAKPFSRVEV 353

Query: 269 GNGENTSLWYDPWHPTGIL 213
            NG  TS W+D W   G L
Sbjct: 354 NNGARTSFWFDNWSGMGHL 372


>dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana] gi|93007380|gb|ABE97193.1|
           hypothetical protein At5g13655 [Arabidopsis thaliana]
          Length = 385

 Score =  126 bits (316), Expect = 8e-27
 Identities = 71/199 (35%), Positives = 101/199 (50%), Gaps = 7/199 (3%)
 Frame = -1

Query: 587 MCRNFLWVGPDGGNSHALISWEDVCYPYEEGGLGVRCLATTNRAANLRHIWHITSKKDTL 408
           MC  FLW GP        ++W  VC P  EGGLG+R +  TN+   L+ IW I S K +L
Sbjct: 1   MCSAFLWSGPSLNARKTKVAWSVVCTPKSEGGLGLRAVEETNKVCMLKLIWRILSAKGSL 60

Query: 407 WVHWVQKNLIKGRNFWSLK-IPSDCSWSWKNILKDRVEARAIAMHLIGNGENTSLWYDPW 231
           WV WV+K+L++G + W++K   S  SW WK +LK R +A+      + NGE+TS WYD W
Sbjct: 61  WVDWVKKHLLRGGSLWAVKETSSRGSWIWKKLLKYRDKAKCFHKVDVRNGESTSFWYDSW 120

Query: 230 HPTGILAGKFDMVLLYDSVCNKRAKVSSFIEDGQWHIPQQFKNHYPELVQGIEEEVE--- 60
              G L  KF      D    K + +SS I      +  + + H   L+  +E E++   
Sbjct: 121 SSLGCLYDKFGERGCIDMGIPKDSTLSSAI------MTTRRRKHRQPLLNAVETEIQKQK 174

Query: 59  ---IHTGEDEVVWTVTDSG 12
              I T  D  +W   + G
Sbjct: 175 QSRIVTERDVALWKGKEDG 193