BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00017011
         (614 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containi...   219   2e-55
gb|AGG38110.1| maternal effect embryo arrest 40 protein [Dimocar...   207   1e-51
ref|XP_002531339.1| pentatricopeptide repeat-containing protein,...   190   1e-46
ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containi...   185   6e-45
ref|XP_002305565.1| predicted protein [Populus trichocarpa] gi|2...   178   6e-43

>ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  219 bits (559), Expect = 2e-55
 Identities = 114/203 (56%), Positives = 138/203 (67%)
 Frame = -2

Query: 610 FSALSSIPTFQMPPNFTSKDLLTALRNQKDPHSTLQLFTWASKQVNFEPRYFLYEEVIQQ 431
           FS LS  PT Q+P NFT K L  ALR Q D  S L L  WASKQ NF P   +YEEV+++
Sbjct: 55  FSTLSPSPTTQLPQNFTPKQLRDALRRQSDEDSILDLLDWASKQPNFVPSSVIYEEVLRK 114

Query: 430 LGKIGSFDEMKSVLNDMKVSGCEIIRQXXXXXXXXXXXXXXXXXXXXGCEIIRQGTFLIF 251
           LGK GSF  M+ VL +MK +GCE                            IR+GTFLI 
Sbjct: 115 LGKDGSFGSMRRVLQEMKHTGCE----------------------------IRRGTFLIL 146

Query: 250 VESYAKFSLFDEAISVLEMMRNEYGVEVDTFTYNYLLNVLVDGNKLKLVEFVHCKMTSEG 71
           +ESYAKF LFDEA++V+++M  E+G+++D FTYN+LLNVLVDGNKLKLVE V+ +M S G
Sbjct: 147 IESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRG 206

Query: 70  VKPDVSTFNILIKALCRAHQIRP 2
           +KPDV+TFNILIKALCRAHQIRP
Sbjct: 207 IKPDVTTFNILIKALCRAHQIRP 229


>gb|AGG38110.1| maternal effect embryo arrest 40 protein [Dimocarpus longan]
          Length = 763

 Score =  207 bits (527), Expect = 1e-51
 Identities = 105/198 (53%), Positives = 130/198 (65%)
 Frame = -2

Query: 595 SIPTFQMPPNFTSKDLLTALRNQKDPHSTLQLFTWASKQVNFEPRYFLYEEVIQQLGKIG 416
           S  ++Q+PPNFTS   L  +R Q D  S L+LF+WASKQ N+ P   +YEE++ +LGK+G
Sbjct: 49  SASSYQLPPNFTSSQHLDTIRRQHDETSALRLFSWASKQPNYTPTLSVYEELLAKLGKVG 108

Query: 415 SFDEMKSVLNDMKVSGCEIIRQXXXXXXXXXXXXXXXXXXXXGCEIIRQGTFLIFVESYA 236
           SFD M  +L ++K +GC+I R                            GTFLIF+ESYA
Sbjct: 109 SFDSMTEILQEIKAAGCQINR----------------------------GTFLIFIESYA 140

Query: 235 KFSLFDEAISVLEMMRNEYGVEVDTFTYNYLLNVLVDGNKLKLVEFVHCKMTSEGVKPDV 56
           KF L+DE I+V  +M  E+G+E DT  YN+LLNVLVDGNKLKLVE  H  M S G+KPD 
Sbjct: 141 KFELYDEIITVTRIMEEEFGLEPDTHFYNFLLNVLVDGNKLKLVETAHSDMVSRGIKPDA 200

Query: 55  STFNILIKALCRAHQIRP 2
           STFNILIKALCRAHQIRP
Sbjct: 201 STFNILIKALCRAHQIRP 218


>ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529061|gb|EEF31046.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 630

 Score =  190 bits (483), Expect = 1e-46
 Identities = 97/195 (49%), Positives = 126/195 (64%)
 Frame = -2

Query: 586 TFQMPPNFTSKDLLTALRNQKDPHSTLQLFTWASKQVNFEPRYFLYEEVIQQLGKIGSFD 407
           T  +  NFT   LL  LR Q D  + L+L +WASKQ NF P   +YEE++++LGK+GSF+
Sbjct: 45  TATLSSNFTPAQLLDTLRRQNDETAALRLLSWASKQPNFRPNSSIYEEILRKLGKVGSFN 104

Query: 406 EMKSVLNDMKVSGCEIIRQXXXXXXXXXXXXXXXXXXXXGCEIIRQGTFLIFVESYAKFS 227
            MK +L +MK   C+I R                            G  LIF++SYAKF 
Sbjct: 105 SMKDILQEMKGLDCQIDR----------------------------GVLLIFIDSYAKFE 136

Query: 226 LFDEAISVLEMMRNEYGVEVDTFTYNYLLNVLVDGNKLKLVEFVHCKMTSEGVKPDVSTF 47
           L++E + ++E+M  E+G+ +DT  YN+LLNVLVDGNKLKLVE VH  M S+G+KPDVSTF
Sbjct: 137 LYEEILCIVEVMEVEFGLALDTLLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTF 196

Query: 46  NILIKALCRAHQIRP 2
           NILIKALC+AHQIRP
Sbjct: 197 NILIKALCKAHQIRP 211


>ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
           gi|449525343|ref|XP_004169677.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  185 bits (469), Expect = 6e-45
 Identities = 97/202 (48%), Positives = 125/202 (61%)
 Frame = -2

Query: 607 SALSSIPTFQMPPNFTSKDLLTALRNQKDPHSTLQLFTWASKQVNFEPRYFLYEEVIQQL 428
           S  SS     +PP+FT K L+  LR Q D  + L++F WASKQ NF P   +YEE++++L
Sbjct: 48  STSSSHIVHHLPPDFTPKQLIETLRRQTDEVAALRVFNWASKQPNFVPSSSVYEEILRKL 107

Query: 427 GKIGSFDEMKSVLNDMKVSGCEIIRQXXXXXXXXXXXXXXXXXXXXGCEIIRQGTFLIFV 248
           GK GSF+ M+ VL +MK+SGCE  R                            G FLIFV
Sbjct: 108 GKAGSFEYMRRVLEEMKLSGCEFDR----------------------------GIFLIFV 139

Query: 247 ESYAKFSLFDEAISVLEMMRNEYGVEVDTFTYNYLLNVLVDGNKLKLVEFVHCKMTSEGV 68
           ESY KF L+DE + ++++M +EY ++ DT  YN LLNVLVD NKLKLVE  H  M    +
Sbjct: 140 ESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRI 199

Query: 67  KPDVSTFNILIKALCRAHQIRP 2
           + DVSTFNILIKALC+AHQ+RP
Sbjct: 200 RHDVSTFNILIKALCKAHQVRP 221


>ref|XP_002305565.1| predicted protein [Populus trichocarpa] gi|222848529|gb|EEE86076.1|
           predicted protein [Populus trichocarpa]
          Length = 757

 Score =  178 bits (452), Expect = 6e-43
 Identities = 90/193 (46%), Positives = 120/193 (62%)
 Frame = -2

Query: 580 QMPPNFTSKDLLTALRNQKDPHSTLQLFTWASKQVNFEPRYFLYEEVIQQLGKIGSFDEM 401
           ++ PNFT   LL +LR ++D  + + LF WASKQ NF+P   +++EV+ +LGK G FD M
Sbjct: 49  RLSPNFTPTQLLHSLRREEDSSAVIHLFYWASKQPNFKPSSSIFKEVLHKLGKAGEFDAM 108

Query: 400 KSVLNDMKVSGCEIIRQXXXXXXXXXXXXXXXXXXXXGCEIIRQGTFLIFVESYAKFSLF 221
           K +L +MK+S                              +I   + L+F+ESYA F L+
Sbjct: 109 KDILKEMKIS----------------------------LSVIDNDSLLVFIESYASFGLY 140

Query: 220 DEAISVLEMMRNEYGVEVDTFTYNYLLNVLVDGNKLKLVEFVHCKMTSEGVKPDVSTFNI 41
           +E +  ++ M  E+GV  +T  YN+LLNVLVDGNKLKLVE  H  M S G++PDVSTFNI
Sbjct: 141 NEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNI 200

Query: 40  LIKALCRAHQIRP 2
           LIKALCRAHQIRP
Sbjct: 201 LIKALCRAHQIRP 213