BLASTX nr result
ID: Coptis25_contig00016927
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00016927
(1494 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272846.1| PREDICTED: 5' exonuclease Apollo [Vitis vini... 479 e-132
ref|XP_002522720.1| DNA cross-link repair protein pso2/snm1, put... 468 e-129
ref|XP_004144572.1| PREDICTED: 5' exonuclease Apollo-like [Cucum... 464 e-128
ref|XP_002332533.1| predicted protein [Populus trichocarpa] gi|2... 408 e-111
ref|XP_002890726.1| hypothetical protein ARALYDRAFT_472944 [Arab... 401 e-109
>ref|XP_002272846.1| PREDICTED: 5' exonuclease Apollo [Vitis vinifera]
gi|296081253|emb|CBI17997.3| unnamed protein product
[Vitis vinifera]
Length = 435
Score = 479 bits (1232), Expect = e-132
Identities = 245/434 (56%), Positives = 310/434 (71%), Gaps = 1/434 (0%)
Frame = +2
Query: 65 MEKGIISVDKWTESSQAYFLTHLHSDHTKGLSSNWNKGPLFCSSITAKLFPSKFSDFKSS 244
MEKG+ISVD+W++ SQ YFLTHLHSDHT+ LSS+W KGPLFCS +TAKLFP KF +F S
Sbjct: 1 MEKGLISVDRWSDHSQVYFLTHLHSDHTQCLSSSWTKGPLFCSRLTAKLFPFKFPNFNLS 60
Query: 245 LLIKVLEIWSHYSTSLFSPSSGAEITVQVMAIDADHCPGAVMYLFRGEFGCVLYTGDFRW 424
LL ++LEI S +S SL SPSSG+E TV VMAIDA HCPGAVMYLFRG+FGC+L+TGDFRW
Sbjct: 61 LL-RILEIGSWHSVSLVSPSSGSETTVDVMAIDAHHCPGAVMYLFRGDFGCMLFTGDFRW 119
Query: 425 ERISEKALLGKSMLLNALGSDRTDVLYLDNMYCNPSYLFPPREVVAQQVVNIIASHPDHD 604
E +E+A +G++MLL+AL DR ++LYLDN YCNPS+ FP RE AQQVV+IIASHP HD
Sbjct: 120 EATNERAKIGRTMLLHALEGDRVNILYLDNTYCNPSFSFPSREAAAQQVVDIIASHPKHD 179
Query: 605 IVIAINTLGKEDLLLHISHALKIKIWVWPERLQTMHLLGF*DIFXXXXXXXXXXXXXFYS 784
I+I I+TLGKEDLLL+IS +LK+KIWVWPERLQTMHLLGF DIF YS
Sbjct: 180 IIIGIDTLGKEDLLLYISRSLKVKIWVWPERLQTMHLLGFHDIFTTKTSLTRIRAVPRYS 239
Query: 785 FSINTLEELNKMHPTIGIMPSGLPWVVRPFEENGCSLGSSHFIFH-DRSKITNSSDIAHR 961
FSINTLE LN + PTIGIMPSGLPWVV+P E N G H +I N A
Sbjct: 240 FSINTLEGLNTVRPTIGIMPSGLPWVVKPSEGNDNPAGPPSISHHCGNKRIINGGPRAEI 299
Query: 962 SQQTEVSGSVRKFHHCIYSVPYSDHSCFNELQEFVNLLQPLTMKGIVSSSSCDTDPHNFL 1141
+++ ++ SV +FH IYSVPYS+HSCF E+++F+ L+QP+ +KGIVSSS C +P +
Sbjct: 300 NKKGKLR-SVVRFHQYIYSVPYSEHSCFPEIEDFIKLVQPINIKGIVSSSFCYIEPLYYF 358
Query: 1142 GNLCGPKQTIEQSSKKFQRRKVNGSAETVQVKPVTGRDKSSDGKLERERYMKPRVSWKRV 1321
G LCG + ++ +K +RR+ + E + K +G +D + + + +RV
Sbjct: 359 GGLCGVNPSSQRLPRKSERREKYENIE-AKTKSNSGSSNFTDAENRKRKIDFLGSHLRRV 417
Query: 1322 SVMRRLSCGAKIVE 1363
S++RR G KIVE
Sbjct: 418 SILRRAQRGVKIVE 431
>ref|XP_002522720.1| DNA cross-link repair protein pso2/snm1, putative [Ricinus communis]
gi|223538070|gb|EEF39682.1| DNA cross-link repair protein
pso2/snm1, putative [Ricinus communis]
Length = 427
Score = 468 bits (1205), Expect = e-129
Identities = 246/438 (56%), Positives = 301/438 (68%)
Frame = +2
Query: 65 MEKGIISVDKWTESSQAYFLTHLHSDHTKGLSSNWNKGPLFCSSITAKLFPSKFSDFKSS 244
MEKG++SVD+W E SQ YFLTHLHSDHTKGL+S W +GPLFCS +TA LFP++F +F S
Sbjct: 1 MEKGLVSVDQWKEGSQVYFLTHLHSDHTKGLTSAWARGPLFCSRLTANLFPARFPEFNLS 60
Query: 245 LLIKVLEIWSHYSTSLFSPSSGAEITVQVMAIDADHCPGAVMYLFRGEFGCVLYTGDFRW 424
LL VL+I +S S+ SPSSG++ +QVM IDA HCPGAVM LFRG+FGC+LYTGDFRW
Sbjct: 61 LLC-VLDIGVWHSLSVVSPSSGSQTVLQVMPIDAHHCPGAVMLLFRGDFGCLLYTGDFRW 119
Query: 425 ERISEKALLGKSMLLNALGSDRTDVLYLDNMYCNPSYLFPPREVVAQQVVNIIASHPDHD 604
E SE+ +G +MLLNAL D D+LYLDN YCNPS+ FPPR V A+QVV+IIASHP HD
Sbjct: 120 EATSERGKIGSNMLLNALKDDSVDILYLDNTYCNPSFDFPPRHVAARQVVDIIASHPGHD 179
Query: 605 IVIAINTLGKEDLLLHISHALKIKIWVWPERLQTMHLLGF*DIFXXXXXXXXXXXXXFYS 784
I+I I++LGKEDLLLHIS L IKIWVWPERLQTMHLLGF DIF YS
Sbjct: 180 IIIGIDSLGKEDLLLHISRMLNIKIWVWPERLQTMHLLGFHDIFTTKTSQTRVRAVPRYS 239
Query: 785 FSINTLEELNKMHPTIGIMPSGLPWVVRPFEENGCSLGSSHFIFHDRSKITNSSDIAHRS 964
FSINTLEELNKMHPTIGIMPSGLPWVV+P + + GS + K++ +
Sbjct: 240 FSINTLEELNKMHPTIGIMPSGLPWVVKPTKGDDNLFGSFLTSRYKNGKLSANGGTGTDK 299
Query: 965 QQTEVSGSVRKFHHCIYSVPYSDHSCFNELQEFVNLLQPLTMKGIVSSSSCDTDPHNFLG 1144
V SV + H IYSVPYSDHSCF+E+QEF+ L+QP +MKGIVSSSSC +P + G
Sbjct: 300 LNGSVQ-SVERLHQYIYSVPYSDHSCFSEIQEFIELVQPTSMKGIVSSSSCYINPVYYFG 358
Query: 1145 NLCGPKQTIEQSSKKFQRRKVNGSAETVQVKPVTGRDKSSDGKLERERYMKPRVSWKRVS 1324
LC + ++ K+++++V VQ K G+ +R RVS RV
Sbjct: 359 RLCRENWSAQRMRDKYEKKEV----VDVQTKSYCGKYIPMGAAKKRR---TGRVS--RVR 409
Query: 1325 VMRRLSCGAKIVETINID 1378
+RR+ GAKI E +D
Sbjct: 410 ALRRIRHGAKIEEYYCLD 427
>ref|XP_004144572.1| PREDICTED: 5' exonuclease Apollo-like [Cucumis sativus]
gi|449493187|ref|XP_004159216.1| PREDICTED: 5'
exonuclease Apollo-like [Cucumis sativus]
Length = 428
Score = 464 bits (1194), Expect = e-128
Identities = 243/434 (55%), Positives = 300/434 (69%), Gaps = 1/434 (0%)
Frame = +2
Query: 65 MEKGIISVDKWTESSQAYFLTHLHSDHTKGLSSNWNKGPLFCSSITAKLFPSKFSDFKSS 244
ME G+ISVD+W+E SQ YFLTHLHSDHTKGLSS W+KGPLFCS +TAK FP KF F S
Sbjct: 1 MENGLISVDRWSEGSQIYFLTHLHSDHTKGLSSQWSKGPLFCSRLTAKFFPLKFPSFNLS 60
Query: 245 LLIKVLEIWSHYSTSLFSPSSGAEITVQVMAIDADHCPGAVMYLFRGEFGCVLYTGDFRW 424
LL +VLEI +S SL SPSSG+ ++V+AIDA HCPGAVM LFRG+FGC+LYTGDFRW
Sbjct: 61 LL-RVLEIGLWHSISLVSPSSGSRKVIKVVAIDAHHCPGAVMLLFRGDFGCLLYTGDFRW 119
Query: 425 ERISEKALLGKSMLLNALGSDRTDVLYLDNMYCNPSYLFPPREVVAQQVVNIIASHPDHD 604
E SE+A G+ LLNAL + DVLYLDN YCNPSY FP RE+ A+Q+V+IIASHP HD
Sbjct: 120 EMSSERANKGRIALLNALEDNTVDVLYLDNTYCNPSYAFPSREIAARQIVDIIASHPQHD 179
Query: 605 IVIAINTLGKEDLLLHISHALKIKIWVWPERLQTMHLLGF*DIFXXXXXXXXXXXXXFYS 784
I+I +N+LGKEDLL+HIS L +K+WVWPERLQTMHLLGF + F YS
Sbjct: 180 IIIGVNSLGKEDLLVHISRMLGLKVWVWPERLQTMHLLGFNNEFTTKTNLTRVRAVPRYS 239
Query: 785 FSINTLEELNKMHPTIGIMPSGLPWVVRPFEENGCSLGSSHFIFHDRSKITNSSDIAHRS 964
FSI+TLE LN+M PTIGIMPSGLPWVVRP E +G GS + +SK+ +
Sbjct: 240 FSIDTLEGLNQMRPTIGIMPSGLPWVVRPHEGDGIPSGSLLITRYRQSKLNENGPFLIEK 299
Query: 965 QQTEVSGSVRKFHHCIYSVPYSDHSCFNELQEFVNLLQPLTMKGIVSSSSCDTDPHNFLG 1144
Q +V SV K H I+SVPYSDH+CF+E+QEF+ L+ P T+KGIVSSSSC +P + G
Sbjct: 300 QTGKVE-SVTKLHKYIFSVPYSDHACFSEIQEFIKLICPTTIKGIVSSSSCYIEPLYYFG 358
Query: 1145 NLCGPKQTIEQ-SSKKFQRRKVNGSAETVQVKPVTGRDKSSDGKLERERYMKPRVSWKRV 1321
LCG KQ + + KK + KV + V +K V + ++ G + V RV
Sbjct: 359 RLCGAKQPVNKFHHKKERTEKVE---KDVDIKFVNWKKGTNAG------ILNAGVRLGRV 409
Query: 1322 SVMRRLSCGAKIVE 1363
S +RR+ GA++ E
Sbjct: 410 SALRRVQRGARLQE 423
>ref|XP_002332533.1| predicted protein [Populus trichocarpa] gi|222832669|gb|EEE71146.1|
predicted protein [Populus trichocarpa]
Length = 360
Score = 408 bits (1048), Expect = e-111
Identities = 212/379 (55%), Positives = 261/379 (68%), Gaps = 3/379 (0%)
Frame = +2
Query: 65 MEKGIISVDKWTESSQAYFLTHLHSDHTKGLSSNWNKGPLFCSSITAKLFPSKFSDFKSS 244
MEKG+ISVD++T+SSQAYFLTHLH+DHT+GL+S W KGPLFCS +TAKL P KF DF S
Sbjct: 1 MEKGLISVDRFTKSSQAYFLTHLHTDHTQGLTSKWGKGPLFCSKLTAKLLPFKFPDFNLS 60
Query: 245 LLIKVLEIWSHYSTSLFSPSSGAEITVQVMAIDADHCPGAVMYLFRGEFGCVLYTGDFRW 424
LL +S SL SP++G++IT VMA+D HCPG VM+LFRGEFGC++YTGDF+W
Sbjct: 61 LL--------RHSFSLISPTTGSQITAHVMALDTHHCPGVVMFLFRGEFGCLMYTGDFQW 112
Query: 425 ERISEKALLGKSMLLNALGSDRTDVLYLDNMYCNPSYLFPPREVVAQQVVNIIASHPDHD 604
E S++A +S LLN L ++ DVLYLDN YCNPSY FP REV AQQVV+IIASH +HD
Sbjct: 113 EVDSKRAKDARSRLLNVLKNETVDVLYLDNTYCNPSYDFPTREVAAQQVVDIIASHLEHD 172
Query: 605 IVIAINTLGKEDLLLHISHALKIKIWVWPERLQTMHLLGF*DIFXXXXXXXXXXXXXFYS 784
IVI I+TLGKE+LL+HIS L IKIW+W ERLQTMHLLGF D F YS
Sbjct: 173 IVIGIDTLGKEELLIHISRVLNIKIWLWLERLQTMHLLGFHDTFTTKNSLTRVRAVPCYS 232
Query: 785 FSINTLEELNKMHPTIGIMPSGLPWVVRPFEENGCSLGSSHFIFHDRSKITNSSDIAHRS 964
S+ TLE LN M PTIGIMPSGLPWV++P + + GS + R K SD
Sbjct: 233 LSVETLEGLNTMRPTIGIMPSGLPWVLKPVKGDDNLFGS---LLTSRYKKRQPSD----- 284
Query: 965 QQTEVSGSV---RKFHHCIYSVPYSDHSCFNELQEFVNLLQPLTMKGIVSSSSCDTDPHN 1135
++ G++ ++H ++SVPYS H CF E+QEF+ L+QP MKGIVSSSSC DP
Sbjct: 285 ---KLDGNLAYAERYHQYMFSVPYSYHLCFAEIQEFIELVQPANMKGIVSSSSCYVDPLY 341
Query: 1136 FLGNLCGPKQTIEQSSKKF 1192
+ L G + Q K+F
Sbjct: 342 YFSRLYG----VNQPPKRF 356
>ref|XP_002890726.1| hypothetical protein ARALYDRAFT_472944 [Arabidopsis lyrata subsp.
lyrata] gi|297336568|gb|EFH66985.1| hypothetical protein
ARALYDRAFT_472944 [Arabidopsis lyrata subsp. lyrata]
Length = 422
Score = 401 bits (1031), Expect = e-109
Identities = 213/421 (50%), Positives = 276/421 (65%), Gaps = 1/421 (0%)
Frame = +2
Query: 65 MEKGIISVDKWTESSQAYFLTHLHSDHTKGLSSNWNKGPLFCSSITAKLFPSKFSDFKSS 244
ME G+ISVD+W + SQAYFLTH+ SDHT+GLS W+KGPL+CS ITA LFPS+F F S
Sbjct: 1 MESGLISVDRWRKGSQAYFLTHMQSDHTRGLSGGWSKGPLYCSRITASLFPSRFPGFDLS 60
Query: 245 LLIKVLEIWSHYSTSLFSPSSGAEITVQVMAIDADHCPGAVMYLFRGEFGCVLYTGDFRW 424
LL +V+ ++S S SL SPSSG+ + + MAIDA HCPG++M+LFRG+FGC LYTGDFRW
Sbjct: 61 LL-RVVPLYSWTSLSLRSPSSGSTVRLHFMAIDAHHCPGSMMFLFRGDFGCFLYTGDFRW 119
Query: 425 ER-ISEKALLGKSMLLNALGSDRTDVLYLDNMYCNPSYLFPPREVVAQQVVNIIASHPDH 601
+ S++A +++L++A+ D+LYLDN YCNP Y FP R+V AQ V +IIASHP H
Sbjct: 120 DADASDEA---RTILVDAIHEFPVDILYLDNTYCNPIYSFPSRQVAAQLVADIIASHPSH 176
Query: 602 DIVIAINTLGKEDLLLHISHALKIKIWVWPERLQTMHLLGF*DIFXXXXXXXXXXXXXFY 781
DI+IA+++LGKE+LLLH+S L IKIWVWPERL+TMHLLGF D+F Y
Sbjct: 177 DIIIAVDSLGKEELLLHVSRVLNIKIWVWPERLRTMHLLGFQDVFTTDTSLTRVRAVPRY 236
Query: 782 SFSINTLEELNKMHPTIGIMPSGLPWVVRPFEENGCSLGSSHFIFHDRSKITNSSDIAHR 961
SFSI TLE LN M PTIGIMPSGLPWV PF+ + GS F+ T S
Sbjct: 237 SFSIQTLEGLNTMCPTIGIMPSGLPWVKTPFKGDDKLSGS--FLTASMKNETIS------ 288
Query: 962 SQQTEVSGSVRKFHHCIYSVPYSDHSCFNELQEFVNLLQPLTMKGIVSSSSCDTDPHNFL 1141
+Q+ + +V KFH +YSV YSDHSC+ E+ EF+ L++P +MKGIV SSS DP +
Sbjct: 289 AQKELEAAAVHKFHDYMYSVHYSDHSCYEEIGEFIKLVKPKSMKGIVVSSSSYVDPLYYF 348
Query: 1142 GNLCGPKQTIEQSSKKFQRRKVNGSAETVQVKPVTGRDKSSDGKLERERYMKPRVSWKRV 1321
G +CG Q R + + V++K + DK+ R ++ WKR
Sbjct: 349 GRICGANQ---PPQVLLMRPDIADEFQAVRIKSYSATDKT--------RVLEKEKRWKRD 397
Query: 1322 S 1324
S
Sbjct: 398 S 398