BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00016877
         (653 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002534039.1| pentatricopeptide repeat-containing protein,...   137   2e-30
ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat...   136   3e-30
emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]   136   3e-30
ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat...   136   4e-30
ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat...   133   3e-29

>ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223525946|gb|EEF28343.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 634

 Score =  137 bits (345), Expect = 2e-30
 Identities = 62/125 (49%), Positives = 86/125 (68%)
 Frame = +2

Query: 2   DALVLWNEMREKGCNPNRIAYMALIHGLCKCSKSDMGHIYFKEMKEIEMRPDPYVYVALI 181
           DA++LWNEMR +GC PNR+A+M  IHGLCKC K +   I+F EM+E EM PD YVY++L+
Sbjct: 494 DAVMLWNEMRRRGCRPNRVAFMGFIHGLCKCDKPEAALIHFHEMEEEEMEPDTYVYISLV 553

Query: 182 SGSISNGNLLLALEIMKEMVQNKQFPVPSDNNYCLMIDAVSKLSENPTTSLDMKNLTLGG 361
           S  ++  N  +A EI+K+MV  + FP P D N  ++ DA+ KLS++  TS  +K+L   G
Sbjct: 554 SAFVNISNFPMAFEILKKMVDRRNFPDPLDKNCIIIRDAILKLSKDARTSSSVKSLIASG 613

Query: 362 GIPAI 376
            IP I
Sbjct: 614 SIPTI 618


>ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g08310, mitochondrial [Vitis vinifera]
            gi|296085293|emb|CBI29025.3| unnamed protein product
            [Vitis vinifera]
          Length = 854

 Score =  136 bits (343), Expect = 3e-30
 Identities = 72/136 (52%), Positives = 93/136 (68%)
 Frame = +2

Query: 2    DALVLWNEMREKGCNPNRIAYMALIHGLCKCSKSDMGHIYFKEMKEIEMRPDPYVYVALI 181
            DA+ LWNEMR KGC+PNRI+++ALIHGLCKC   D   +YF+EM E E  PD  VYVALI
Sbjct: 720  DAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMGERET-PDTIVYVALI 778

Query: 182  SGSISNGNLLLALEIMKEMVQNKQFPVPSDNNYCLMIDAVSKLSENPTTSLDMKNLTLGG 361
            +  ISN N  LA EI+KEMV   +FP P D N   + DA+ +L+E+ +TS ++KNL   G
Sbjct: 779  TSFISNKNPTLAFEILKEMVAKGKFPDPLDKNDLPLRDAILELAEDASTSSNVKNLIAEG 838

Query: 362  GIPAICSVSELGGIDG 409
             IP I  +S++G   G
Sbjct: 839  RIPTIVCLSDVGSEGG 854


>emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score =  136 bits (343), Expect = 3e-30
 Identities = 72/136 (52%), Positives = 93/136 (68%)
 Frame = +2

Query: 2    DALVLWNEMREKGCNPNRIAYMALIHGLCKCSKSDMGHIYFKEMKEIEMRPDPYVYVALI 181
            DA+ LWNEMR KGC+PNRI+++ALIHGLCKC   D   +YF+EM E E  PD  VYVALI
Sbjct: 680  DAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMGERET-PDTIVYVALI 738

Query: 182  SGSISNGNLLLALEIMKEMVQNKQFPVPSDNNYCLMIDAVSKLSENPTTSLDMKNLTLGG 361
            +  ISN N  LA EI+KEMV   +FP P D N   + DA+ +L+E+ +TS ++KNL   G
Sbjct: 739  TSFISNKNPTLAFEILKEMVAKGKFPDPLDKNDLPLRDAILELAEDASTSSNVKNLIAEG 798

Query: 362  GIPAICSVSELGGIDG 409
             IP I  +S++G   G
Sbjct: 799  RIPTIVCLSDVGSEGG 814


>ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g08310, mitochondrial-like [Cucumis sativus]
            gi|449510601|ref|XP_004163711.1| PREDICTED: putative
            pentatricopeptide repeat-containing protein At5g08310,
            mitochondrial-like [Cucumis sativus]
          Length = 849

 Score =  136 bits (342), Expect = 4e-30
 Identities = 64/125 (51%), Positives = 84/125 (67%)
 Frame = +2

Query: 2    DALVLWNEMREKGCNPNRIAYMALIHGLCKCSKSDMGHIYFKEMKEIEMRPDPYVYVALI 181
            DA +LWNEM+EKGC+PNRI YMA++HGLCKC K D   +Y+  M+E EM+PD YV VALI
Sbjct: 718  DAKILWNEMQEKGCSPNRITYMAIVHGLCKCGKPDEALVYYHSMEEKEMKPDSYVSVALI 777

Query: 182  SGSISNGNLLLALEIMKEMVQNKQFPVPSDNNYCLMIDAVSKLSENPTTSLDMKNLTLGG 361
               IS  N  +A  I+KE ++    P P+D NY  + DA+ KLS++  T L++K L   G
Sbjct: 778  DAFISKHNFSMAFNILKETIEKGNIPDPTDKNYVTIKDAIFKLSKDEQTGLEVKALIEKG 837

Query: 362  GIPAI 376
             IP I
Sbjct: 838  RIPTI 842


>ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g08310, mitochondrial-like [Glycine max]
          Length = 942

 Score =  133 bits (335), Expect = 3e-29
 Identities = 64/141 (45%), Positives = 94/141 (66%)
 Frame = +2

Query: 2    DALVLWNEMREKGCNPNRIAYMALIHGLCKCSKSDMGHIYFKEMKEIEMRPDPYVYVALI 181
            DAL++WNEM  KGC PN+IA+MALI+GLCKC +      Y +EM++ +M+PD ++Y+ALI
Sbjct: 695  DALLVWNEMERKGCFPNQIAFMALIYGLCKCCRPTTALHYLREMEQKDMKPDSFIYIALI 754

Query: 182  SGSISNGNLLLALEIMKEMVQNKQFPVPSDNNYCLMIDAVSKLSENPTTSLDMKNLTLGG 361
            S  +S+ +L  A EI KEMV +  FP   D NY +++DA+ K S++  TS  ++ L   G
Sbjct: 755  SSFLSDMDLASAFEIFKEMVYSGYFPESHDKNYSIVMDAIDKFSKDHRTSSGIQVLMEEG 814

Query: 362  GIPAICSVSELGGIDGLDPNG 424
             +P  C+V   G  +GLD +G
Sbjct: 815  KLPTHCAVKSKGFKEGLDDDG 835