BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00016827
         (742 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD43492.1| putative retroelement pol polyprotein [Arabidops...    58   2e-06
gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsi...    58   2e-06
gb|AAK44121.1|AF370306_1 putative retroelement pol polyprotein [...    58   2e-06

>dbj|BAD43492.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 207

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 30/72 (41%), Positives = 40/72 (55%)
 Frame = -1

Query: 736 FNSKGRGFIQAGPQRAIQNNGGTPNSSESINEGDGSLTWQICNKPGHSVLKCWNCFNQYF 557
           F+++GRGF Q            + NSS     G  S+  QIC K GH  LKCW+ FN  +
Sbjct: 69  FSTRGRGFHQ---------QISSTNSSSGSQSGGTSVVCQICGKMGHPALKCWHRFNNSY 119

Query: 556 MPEDIPKALAAM 521
             E++P+ALAAM
Sbjct: 120 QYEELPRALAAM 131


>gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1402

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 30/72 (41%), Positives = 40/72 (55%)
 Frame = -1

Query: 736 FNSKGRGFIQAGPQRAIQNNGGTPNSSESINEGDGSLTWQICNKPGHSVLKCWNCFNQYF 557
           F+++GRGF Q            + NSS     G  S+  QIC K GH  LKCW+ FN  +
Sbjct: 257 FSTRGRGFHQ---------QISSTNSSSGSQSGGTSVVCQICGKMGHPALKCWHRFNNSY 307

Query: 556 MPEDIPKALAAM 521
             E++P+ALAAM
Sbjct: 308 QYEELPRALAAM 319


>gb|AAK44121.1|AF370306_1 putative retroelement pol polyprotein [Arabidopsis thaliana]
           gi|17104755|gb|AAL34266.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
           gi|51971701|dbj|BAD44515.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
           gi|51971723|dbj|BAD44526.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
           gi|110741320|dbj|BAF02210.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
          Length = 405

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 30/72 (41%), Positives = 40/72 (55%)
 Frame = -1

Query: 736 FNSKGRGFIQAGPQRAIQNNGGTPNSSESINEGDGSLTWQICNKPGHSVLKCWNCFNQYF 557
           F+++GRGF Q            + NSS     G  S+  QIC K GH  LKCW+ FN  +
Sbjct: 267 FSTRGRGFHQ---------QISSTNSSSGSQSGGTSVVCQICGKMGHPALKCWHRFNNSY 317

Query: 556 MPEDIPKALAAM 521
             E++P+ALAAM
Sbjct: 318 QYEELPRALAAM 329