BLASTX nr result
ID: Coptis25_contig00016720
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00016720
(3050 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 229 3e-77
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 214 3e-73
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 213 4e-70
ref|XP_003543991.1| PREDICTED: uncharacterized protein LOC100811... 202 3e-67
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 206 3e-66
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 229 bits (585), Expect(2) = 3e-77
Identities = 132/423 (31%), Positives = 212/423 (50%), Gaps = 5/423 (1%)
Frame = +2
Query: 1796 FSNCLIEAGLYDHAFSGCQYSWTNF----DGKFSKIDRCLINVAWTDLKLNTSVEFATQG 1963
F L+++ L + + YSW+N D S+ID+ +N+ W + SV++ G
Sbjct: 161 FQQFLLQSNLIESRSTWSYYSWSNSSIGRDRVLSRIDKAYVNLVWLGMYAEVSVQYLPPG 220
Query: 1964 IFDHTPVFLSFYEVAKHS-PPFRFCNFWLLHPNFKQTLSSCWNLLPQGSPPFMLFKKLKN 2140
I DH+P+ + PF+F N F +T+ WN + ++ LK
Sbjct: 221 ISDHSPLLFNLMTGRPQGGKPFKFMNVMAEQGEFLETVEKAWNSVNGRFKLQAIWLNLKA 280
Query: 2141 LKCTLKSWSKSLFSNMSGTIAKLKTQLNEVQMLLQSNPTDQALLVSERSVKNELCKWLKM 2320
+K LK + L+ QL ++Q + D + +S+ N+L W +
Sbjct: 281 VKRELKQMKTQKIGLAHEKVKNLRHQLQDLQSQDDFDHND-IMQTDAKSIMNDLRHWSHI 339
Query: 2321 EEEDLKHRSNCDWYIYGDKCNAYFHNSIKEKKNRRAIWAINELDGTGREGQDQVAAAFVG 2500
E+ L+ +S W GD + F ++K + I +N DG + D+V +
Sbjct: 340 EDSILQQKSRITWLQQGDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEILE 399
Query: 2501 YYKSLLGTKSDAVCSSQVLETIDVTVIDASSVQALEADISDLEIKEALFSIADNKSPGPD 2680
+YK LLGT++ + + + A + ++L +++ EI EAL I ++K+PG D
Sbjct: 400 FYKKLLGTRASTLMGVDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLD 459
Query: 2681 GFNAKFFKKSWDIVGNDFTRAIKFSLNSFNIHKGTNSALLSLIPKCISPSRVDEFRPIAC 2860
GFNA FFKKSW + + I+ N+ +H+ N +++L+PK +RV EFRPIAC
Sbjct: 460 GFNAYFFKKSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIAC 519
Query: 2861 CNIIYKCIVKVITKRLKNCISSINSRSQSVFVPGRDIQDNLLLAHEFISGYTRKRGLKRC 3040
C +IYK I K++T R+K I + + +QS F+PGR I DN+LLA E I GYTRK RC
Sbjct: 520 CTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRC 579
Query: 3041 AIK 3049
+K
Sbjct: 580 IMK 582
Score = 88.6 bits (218), Expect(2) = 3e-77
Identities = 51/162 (31%), Positives = 80/162 (49%)
Frame = +3
Query: 1317 VAWNVRGMNNVTKAKSLRSYRITNKISCLCLLETKVRADKFDTISAVCWPSWKSLHTYAS 1496
V+WNVRGMN+ K K ++++ ++KI LLET+VR + WK L+ Y+
Sbjct: 4 VSWNVRGMNDPFKIKEIKNFLYSHKIVVCALLETRVREQNASKVQGKLGKDWKWLNNYSH 63
Query: 1497 GPSGRIWIGWDSNLMTVTKVEESSQFLHCFVSFLPTSHCFHLTVCYASNSRRERLVLWND 1676
RIWIGW + VT Q + C + SH + Y ++ +R LW+
Sbjct: 64 SARERIWIGWRPAWVNVTLTHTQEQLMVCDIQ--DQSHKLKMVAVYGLHTIADRKSLWSG 121
Query: 1677 LVNI*KTIQGPWTVMRDFNNVLYSHERIGCAPVHPRETTPFR 1802
L+ + Q P ++ DFN V +S++R+ V ET F+
Sbjct: 122 LLQCVQQ-QDPMIIIGDFNAVCHSNDRLYGTLVTDAETEDFQ 162
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 214 bits (544), Expect(2) = 3e-73
Identities = 140/427 (32%), Positives = 212/427 (49%), Gaps = 13/427 (3%)
Frame = +2
Query: 1808 LIEAGLYDHAFSGCQYSWTN----FDGKFSKIDRCLINVAWTDLKLNTSVEFATQGIFDH 1975
+++A L + +G YSW N D S+ID+ +NVAW + + VE+ GI DH
Sbjct: 168 VLKAQLLEAPTTGLFYSWNNKSIGADRISSRIDKSFVNVAWINQYPDVVVEYREAGISDH 227
Query: 1976 TPVFLSFYEVAKHSP---PFRFCNFWLLHPNFKQTLSSCWNLLPQGSPPFMLFKKLKNLK 2146
+P L F +H PF+F NF F + + W ++ +L+ +K
Sbjct: 228 SP--LIFNLATQHDEGGRPFKFLNFLADQNGFVEVVKEAWGSANHRFKMKNIWVRLQAVK 285
Query: 2147 CTLKSWSKSLFSNMSGTIAKLKTQLNEVQMLLQSNPTDQALLVSERSVKNELCKWLKMEE 2326
LKS+ FS + +L+ +L VQ L + + + L E+ + +L KW ++E
Sbjct: 286 RALKSFHSKKFSKAHCQVEELRRKLAAVQALPEVSQVSE-LQEEEKDLIAQLRKWSTIDE 344
Query: 2327 EDLKHRSNCDWYIYGDKCNAYFHNSIKEKKNRRAIWAINELDGTGREGQDQVAAAFVGYY 2506
LK +S W GD + +F +IK +K R I + G ++ +Y
Sbjct: 345 SILKQKSRIQWLSLGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFY 404
Query: 2507 KSLLGTKSDAVCSSQVLETIDVTVI------DASSVQALEADISDLEIKEALFSIADNKS 2668
+ LLGT SS LE ID+ V+ A+S L I+ EI +AL I D K+
Sbjct: 405 RRLLGT------SSSQLEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKA 458
Query: 2669 PGPDGFNAKFFKKSWDIVGNDFTRAIKFSLNSFNIHKGTNSALLSLIPKCISPSRVDEFR 2848
PG DGFN+ FFKKSW ++ + I + +HK N ++LIPK ++R
Sbjct: 459 PGLDGFNSVFFKKSWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYR 518
Query: 2849 PIACCNIIYKCIVKVITKRLKNCISSINSRSQSVFVPGRDIQDNLLLAHEFISGYTRKRG 3028
PIACC+ +YK I K++TKRL+ I+ + +Q+ F+P R I DN+LLA E I GY R+
Sbjct: 519 PIACCSTLYKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHV 578
Query: 3029 LKRCAIK 3049
RC IK
Sbjct: 579 SPRCVIK 585
Score = 90.9 bits (224), Expect(2) = 3e-73
Identities = 49/165 (29%), Positives = 79/165 (47%)
Frame = +3
Query: 1308 IKIVAWNVRGMNNVTKAKSLRSYRITNKISCLCLLETKVRADKFDTISAVCWPSWKSLHT 1487
+KI WNVRG+N+ K K ++ + + KIS L ET+VR I W ++
Sbjct: 1 MKITTWNVRGLNDPIKVKEVKHFLHSQKISLCSLFETRVRQQNSGKIQKKFGNRWSWINN 60
Query: 1488 YASGPSGRIWIGWDSNLMTVTKVEESSQFLHCFVSFLPTSHCFHLTVCYASNSRRERLVL 1667
YA P GRIW+GW +N + + + + Q + V + F + Y ++ +R VL
Sbjct: 61 YACSPRGRIWVGWLNNDVNINVLSVTEQVITMEVKNSYGLNMFKMAAVYGLHTIADRKVL 120
Query: 1668 WNDLVNI*KTIQGPWTVMRDFNNVLYSHERIGCAPVHPRETTPFR 1802
W +L N P ++ D+N V + +R+ V ET+ R
Sbjct: 121 WEELYNFVSVCHEPCILIGDYNAVYSAQDRLNGNDVSEAETSDLR 165
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 213 bits (542), Expect(2) = 4e-70
Identities = 137/431 (31%), Positives = 216/431 (50%), Gaps = 13/431 (3%)
Frame = +2
Query: 1796 FSNCLIEAGLYDHAFSGCQYSWTNFDGK---FSKIDRCLINVAWTDLKLNTSVEFATQGI 1966
F CL+ + + D F G Y+W N KIDR L+N +W + F
Sbjct: 167 FRECLLTSNISDLPFRGNHYTWWNNQENNPIAKKIDRILVNDSWLIASPLSYGSFCAMEF 226
Query: 1967 FDHTPVFLSFY-EVAKHSPPFRFCNFWLLHPNFKQTLSSCWNLLP-QGSPPFMLFKKLKN 2140
DH P ++ + + PF+ NF + HP F + + W+ L QGS F L KK K
Sbjct: 227 SDHCPSCVNISNQSGGRNKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKF 286
Query: 2141 LKCTLKSWSKSLFSNMSGTIAKLKTQLNEVQMLLQSNPTDQALLVSERSVKNELCKWLKM 2320
LK T++++++ +S + + + L Q L + P+ L E+ +
Sbjct: 287 LKGTIRTFNREHYSGLEKRVVQAAQNLKTCQNNLLAAPSSY-LAGLEKEAHRSWAELALA 345
Query: 2321 EEEDLKHRSNCDWYIYGDKCNAYFHNSIKEKKNRRAIWAINE----LDGTGR--EGQDQV 2482
EE L +S W GD +FH + ++ AINE LD TGR E D++
Sbjct: 346 EERFLCQKSRVLWLKCGDSNTTFFHRMMTARR------AINEIHYLLDQTGRRIENTDEL 399
Query: 2483 AAAFVGYYKSLLGTKSDAVCSSQVLETIDVTVI--DASSVQALEADISDLEIKEALFSIA 2656
V ++K L G+ S + + + + +T D ++ Q LEA++S+ +IK F++
Sbjct: 400 QTHCVDFFKELFGSSSHLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALP 459
Query: 2657 DNKSPGPDGFNAKFFKKSWDIVGNDFTRAIKFSLNSFNIHKGTNSALLSLIPKCISPSRV 2836
NKSPGPDG+ ++FFKK+W IVG A++ S + NS ++++PK + R+
Sbjct: 460 SNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRI 519
Query: 2837 DEFRPIACCNIIYKCIVKVITKRLKNCISSINSRSQSVFVPGRDIQDNLLLAHEFISGYT 3016
EFRPI+CCN IYK I K++ +RL+N + S SQS FV GR + +N+LLA E + G+
Sbjct: 520 TEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFG 579
Query: 3017 RKRGLKRCAIK 3049
+ R +K
Sbjct: 580 QANISSRGVLK 590
Score = 81.3 bits (199), Expect(2) = 4e-70
Identities = 50/149 (33%), Positives = 73/149 (48%), Gaps = 3/149 (2%)
Frame = +3
Query: 1305 MIKIVAWNVRGMNNVTKAKSLRSYRITNKISCLCLLETKVRADKFDTISAVCWPSWKSLH 1484
MI +WNVRG NN + ++ R + +K +LET+V+ + +P WKS+
Sbjct: 1 MIDTFSWNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARRSLLSSFPGWKSVC 60
Query: 1485 TYASGPSGRIWIGWDSNLMTVTKVEESSQFLHCFVSFLPTSHCFHLTVCYASNSRRERLV 1664
Y GRIW+ WD + VT + +S Q + C V S F +T YA N R R
Sbjct: 61 NYEFAALGRIWVVWDP-AVEVTVLSKSDQTISCTVKLPHISTEFVVTFVYAVNCRYGRRR 119
Query: 1665 LWNDLVNI---*KTIQGPWTVMRDFNNVL 1742
LW++L + T PW ++ DFN L
Sbjct: 120 LWSELELLAANQTTSDKPWIILGDFNQSL 148
>ref|XP_003543991.1| PREDICTED: uncharacterized protein LOC100811508 [Glycine max]
Length = 1441
Score = 202 bits (514), Expect(2) = 3e-67
Identities = 127/399 (31%), Positives = 209/399 (52%), Gaps = 4/399 (1%)
Frame = +2
Query: 1853 YSWTN---FDGKFSKIDRCLINVAWTDLKLNTSVEFATQGIFDHTPVFLSFYE-VAKHSP 2020
Y+WTN +S+IDR L N+ W L+T + + DH + +S + + K++
Sbjct: 523 YTWTNKQVIGTIYSRIDRVLGNLNWFQDNLDTVLTVLPTSVSDHALLCVSRKDPIIKNNK 582
Query: 2021 PFRFCNFWLLHPNFKQTLSSCWNLLPQGSPPFMLFKKLKNLKCTLKSWSKSLFSNMSGTI 2200
FRF N + + + + W+ +GSP L+ KLK L+ ++ +SK L SN+ +
Sbjct: 583 NFRFSNCLIEMEGYNDMVKASWSRPTRGSPMVRLWNKLKRLQQDMRRFSKPL-SNLKQNL 641
Query: 2201 AKLKTQLNEVQMLLQSNPTDQALLVSERSVKNELCKWLKMEEEDLKHRSNCDWYIYGDKC 2380
K + L Q L++N + + R + E+ ++EE+ L R+ DW GD
Sbjct: 642 IKAREDLQFAQENLRNNNMNGDRIDRVRQLTEEVINLNELEEKMLMQRAKVDWIRKGDGN 701
Query: 2381 NAYFHNSIKEKKNRRAIWAINELDGTGREGQDQVAAAFVGYYKSLLGTKSDAVCSSQVLE 2560
N++ + DGT E Q ++ + +YK L+GT+ + +
Sbjct: 702 NSF------------------KTDGTLLENQSEIEDEIMDFYKKLMGTEDSQLHHIDIDA 743
Query: 2561 TIDVTVIDASSVQALEADISDLEIKEALFSIADNKSPGPDGFNAKFFKKSWDIVGNDFTR 2740
+ ++ + L ++I++ +I+ AL I D+KSPG DGF AKFFK SW IV D
Sbjct: 744 MRNGKQVNMEQRRYLVSNITEQDIERALKGIGDDKSPGIDGFGAKFFKASWCIVKEDVIA 803
Query: 2741 AIKFSLNSFNIHKGTNSALLSLIPKCISPSRVDEFRPIACCNIIYKCIVKVITKRLKNCI 2920
I N +++G N+ +++LIPK + V ++RPIA C +YK I K+IT+RL +
Sbjct: 804 VILEFFNIGRLYRGFNNTVVTLIPKGDNARYVKDYRPIAGCTTVYKIIAKIITERLGKIL 863
Query: 2921 SSINSRSQSVFVPGRDIQDNLLLAHEFISGYTRKRGLKR 3037
SI S SQ+ FVPG++I +++LLA+E ++GY RK G R
Sbjct: 864 PSIISHSQAAFVPGQNIHNHILLAYELLNGYGRKGGTPR 902
Score = 82.4 bits (202), Expect(2) = 3e-67
Identities = 51/139 (36%), Positives = 70/139 (50%)
Frame = +3
Query: 1347 VTKAKSLRSYRITNKISCLCLLETKVRADKFDTISAVCWPSWKSLHTYASGPSGRIWIGW 1526
+ K K + S + + + L+ET+V+ I L Y +GR+WI W
Sbjct: 354 IGKLKEISSRLLKLRPTIAILIETRVKNKNAKKIRDKLKLPHNYLDNYKWHDNGRLWIEW 413
Query: 1527 DSNLMTVTKVEESSQFLHCFVSFLPTSHCFHLTVCYASNSRRERLVLWNDLVNI*KTIQG 1706
D++ + V V+ SSQ++H V L F LT YA N R VLW DL I K QG
Sbjct: 414 DNSKIDVRHVKCSSQYVHVGVYNLQGEFKFWLTAVYALNQLDRRKVLWKDLEAIHKHQQG 473
Query: 1707 PWTVMRDFNNVLYSHERIG 1763
PW V+ DFNNV + +RIG
Sbjct: 474 PWCVIGDFNNVTKAQDRIG 492
Score = 89.0 bits (219), Expect = 7e-15
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 1/151 (0%)
Frame = +1
Query: 259 VIRPWTVDFSTLRT*VDSIPDWIKLSKVPQELWTLNGLSYITSLIGIPLCMDEATAKKQR 438
+++ WT DF+ + ++P W+KL ++P LW L L+ I S IG PL DE TA+K R
Sbjct: 182 ILKEWTPDFNLSKDLEKTMPIWVKLPQLPLCLWGLKSLNKIGSAIGNPLITDECTAQKLR 241
Query: 439 LNFARVCAVIPVVFDYPSSIKIKIH-GRHVVIGVEYPWKPQACSHCNRFGHVLSKCPTRP 615
+++ R+ + + I I G + VEY WKP+ C C + GH K +
Sbjct: 242 VSYVRILVEVDITQKLVEEITISDRTGGKIKQIVEYEWKPEFCEKCQKAGHQCGK--KKV 299
Query: 616 AQVWVPRSQQILERDETSTQVVPVEGTLNGG 708
+ W+PR++Q E PV+ T G
Sbjct: 300 VKKWIPRNKQADEVKADPLPKTPVQNTETEG 330
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 893
Score = 206 bits (525), Expect(2) = 3e-66
Identities = 139/432 (32%), Positives = 219/432 (50%), Gaps = 14/432 (3%)
Frame = +2
Query: 1796 FSNCLIEAGLYDHAFSGCQYSWTNFDGK---FSKIDRCLINVAWTDLKLNTSVEFATQGI 1966
F +CL+++ LYD + G Y+W N KIDR L+N W L + F
Sbjct: 166 FRSCLLDSDLYDLVYKGSSYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPDF 225
Query: 1967 FDHTPVFLSFYE-VAKHSPPFRFCNFWLLHPNFKQTLSSCW-NLLPQGSPPFMLFKKLKN 2140
DH+ + V K PFRF N++L +P+F Q + W + GS + + KKLK+
Sbjct: 226 SDHSSCEVVLDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKH 285
Query: 2141 LKCTLKSWSKSLFSNMSGTIAKLKTQLNEVQMLLQSNPTD-QALLVSERSVKNELCKWLK 2317
LK + +S+ +S++ +++ + Q + +NP+ A L E + K ++ K
Sbjct: 286 LKLPICCFSRENYSDIEKRVSEAHAIVLHRQRITLTNPSVVHATLELEATRKWQILA--K 343
Query: 2318 MEEEDLKHRSNCDWYIYGDKCNAYFHNSIKEKKNRRAIWAINELDGTGREGQDQVAAAF- 2494
EE +S+ W GD AYFH +K+ I + + G E Q +
Sbjct: 344 AEESFFCQKSSISWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIK 403
Query: 2495 ---VGYYKSLL----GTKSDAVCSSQVLETIDVTVIDASSVQALEADISDLEIKEALFSI 2653
+++SLL G S A +L + +V + LE SDL+I+EA FS+
Sbjct: 404 EHSCNFFESLLCGVEGENSLAQSDMNLLLSFRCSV---DQINDLERSFSDLDIQEAFFSL 460
Query: 2654 ADNKSPGPDGFNAKFFKKSWDIVGNDFTRAIKFSLNSFNIHKGTNSALLSLIPKCISPSR 2833
NK+ GPDG++++FFK W +VG + T A++ S + K N+ L LIPK + S+
Sbjct: 461 PRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSK 520
Query: 2834 VDEFRPIACCNIIYKCIVKVITKRLKNCISSINSRSQSVFVPGRDIQDNLLLAHEFISGY 3013
+ +FRPI+C N +YK I K++T RLK ++ + S SQS F+PGR + +N+LLA E + GY
Sbjct: 521 MTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGY 580
Query: 3014 TRKRGLKRCAIK 3049
K R +K
Sbjct: 581 NTKNISSRGMLK 592
Score = 74.7 bits (182), Expect(2) = 3e-66
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Frame = +3
Query: 1311 KIVAWNVRGMNNVTKAKSLRSYRITNKISCLCLLETKVRADKFDTISAVCWPSWKSLHTY 1490
K+ WNVRG N + + + + + NK L+ET V+ K + P W + Y
Sbjct: 4 KLFCWNVRGFNISSHRRGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENY 63
Query: 1491 ASGPSGRIWIGWDSNLMTVTKVEESSQFLHCFVSFLPTSHCFHLTVCYASNSRRERLVLW 1670
G+IW+ WD ++ V + S Q + C + + F +++ YASN R LW
Sbjct: 64 EFSVLGKIWVLWDPSVKVVV-IGRSLQMITCELLLPDSPSWFVVSIVYASNEEGTRKELW 122
Query: 1671 NDLVNI*KT---IQGPWTVMRDFNNVL 1742
N+LV + + + W V+ DFN +L
Sbjct: 123 NELVQLALSPVVVGRSWIVLGDFNQIL 149