BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00016705
         (739 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279094.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   384   e-104
ref|XP_004134588.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   367   1e-99
ref|XP_002305441.1| predicted protein [Populus trichocarpa] gi|2...   365   7e-99
ref|NP_193320.6| RNA helicase 1 [Arabidopsis thaliana] gi|334302...   343   2e-92
emb|CAB45993.1| ATP-dependent RNA helicase like protein [Arabido...   343   2e-92

>ref|XP_002279094.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Vitis vinifera]
           gi|297740757|emb|CBI30939.3| unnamed protein product
           [Vitis vinifera]
          Length = 516

 Score =  384 bits (985), Expect = e-104
 Identities = 197/250 (78%), Positives = 217/250 (86%), Gaps = 5/250 (2%)
 Frame = -3

Query: 737 PTRDLAFQVKQVFASIAPAVGLSVGLAVGQTCIADEISELIKRPKLEAGVCYDLEEQGVE 558
           PTRDLA QVK+VFA+IAPAVGLSVGLAVGQT IADEISELIKRPKLEAG+CYD E+  +E
Sbjct: 110 PTRDLALQVKEVFAAIAPAVGLSVGLAVGQTSIADEISELIKRPKLEAGICYDPEDISLE 169

Query: 557 LQSSVDILVATPGRLMDHINTTKGFTLEHLRYLVVDETDRLLREAYQSWLPTMLQLTQSD 378
           LQSSVDILVATPGRLMDHINTTKGFTL+HLRYLVVDETDRLLREAYQSWLPT+LQLT+S 
Sbjct: 170 LQSSVDILVATPGRLMDHINTTKGFTLKHLRYLVVDETDRLLREAYQSWLPTVLQLTRSS 229

Query: 377 REDIFSHAK-----MFASLKTTRKSGVERGFKGKTYPRLVKMLLSATLTHDPSKLSQLDL 213
            E +F   K      F S+ T R+ GVERGFKG++YPRLVK++LSATLT DPSKL+ LDL
Sbjct: 230 DESLFPCGKTILPSTFGSMNTIRRCGVERGFKGRSYPRLVKIVLSATLTQDPSKLALLDL 289

Query: 212 HHPLFLTTGSQRYQLPEKLKSYKLICESKLKPLCLIALLQDLKGEKCIVFTSSVESTHRL 33
           HHPL LT G +RYQLPEKLKS+KLICESKLKPL L+ALL+DL GEKCIVFTSSVES HRL
Sbjct: 290 HHPLLLTAGQRRYQLPEKLKSFKLICESKLKPLYLVALLRDLGGEKCIVFTSSVESAHRL 349

Query: 32  STLLKCFGGL 3
            TLL  FG L
Sbjct: 350 CTLLNFFGDL 359


>ref|XP_004134588.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Cucumis
           sativus] gi|449490565|ref|XP_004158642.1| PREDICTED:
           DEAD-box ATP-dependent RNA helicase 1-like [Cucumis
           sativus]
          Length = 517

 Score =  367 bits (943), Expect = 1e-99
 Identities = 191/250 (76%), Positives = 212/250 (84%), Gaps = 5/250 (2%)
 Frame = -3

Query: 737 PTRDLAFQVKQVFASIAPAVGLSVGLAVGQTCIADEISELIKRPKLEAGVCYDLEEQGVE 558
           PTRDLA QVK+VF++IAPAVGLSVGLAVGQ+ IADEISELIKRPKLEAG+CYD ++  VE
Sbjct: 110 PTRDLALQVKEVFSAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPDDFLVE 169

Query: 557 LQSSVDILVATPGRLMDHINTTKGFTLEHLRYLVVDETDRLLREAYQSWLPTMLQLTQSD 378
           LQSSVDILVATPGRLMDHIN TKGFTL+HLRYLV+DETDRLLREAYQSWLPT+LQLT +D
Sbjct: 170 LQSSVDILVATPGRLMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHAD 229

Query: 377 REDI-----FSHAKMFASLKTTRKSGVERGFKGKTYPRLVKMLLSATLTHDPSKLSQLDL 213
              I      S+     SLKT R+ GVERGFKGK YPRL KM+LSATLT DP KL+QLDL
Sbjct: 230 DSSIIFPSYISNPCSDGSLKTIRRFGVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDL 289

Query: 212 HHPLFLTTGSQRYQLPEKLKSYKLICESKLKPLCLIALLQDLKGEKCIVFTSSVESTHRL 33
           HHPLFLTTG +RY+LPEKL+SY +ICESKLKPL L+ALLQ L  EKCIVFTSSVESTHRL
Sbjct: 290 HHPLFLTTGKRRYKLPEKLESYMMICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 349

Query: 32  STLLKCFGGL 3
            +LL  F  L
Sbjct: 350 CSLLNFFEDL 359


>ref|XP_002305441.1| predicted protein [Populus trichocarpa] gi|222848405|gb|EEE85952.1|
           predicted protein [Populus trichocarpa]
          Length = 518

 Score =  365 bits (936), Expect = 7e-99
 Identities = 190/250 (76%), Positives = 212/250 (84%), Gaps = 5/250 (2%)
 Frame = -3

Query: 737 PTRDLAFQVKQVFASIAPAVGLSVGLAVGQTCIADEISELIKRPKLEAGVCYDLEEQGVE 558
           PTRDLA QVKQVFA+IAPA+GLSVGLAVGQ+ IADEISELIK+P+ EAG+CYD ++   E
Sbjct: 113 PTRDLALQVKQVFAAIAPAMGLSVGLAVGQSSIADEISELIKKPEHEAGICYDPQDVLQE 172

Query: 557 LQSSVDILVATPGRLMDHINTTKGFTLEHLRYLVVDETDRLLREAYQSWLPTMLQLTQSD 378
           LQSSVDILVATPGRLMDHI TTKGFTLEHL YLVVDETDRLLRE+YQSWLPT+L+LT+  
Sbjct: 173 LQSSVDILVATPGRLMDHITTTKGFTLEHLCYLVVDETDRLLRESYQSWLPTVLKLTRPY 232

Query: 377 REDIFSHAKMF-----ASLKTTRKSGVERGFKGKTYPRLVKMLLSATLTHDPSKLSQLDL 213
            E +      F      SLKT R+ GVERGFKGK+YPRL KM+LSATLT DPSKL+QL+L
Sbjct: 233 DESLVPGVNNFLPCASGSLKTIRRCGVERGFKGKSYPRLAKMVLSATLTQDPSKLAQLNL 292

Query: 212 HHPLFLTTGSQRYQLPEKLKSYKLICESKLKPLCLIALLQDLKGEKCIVFTSSVESTHRL 33
           HHPLFLTTG +RYQLPEKL+SYKLIC SKLKPL L+A+LQ L GEKCIVFTSSVESTHRL
Sbjct: 293 HHPLFLTTGQRRYQLPEKLESYKLICVSKLKPLYLVAVLQHLGGEKCIVFTSSVESTHRL 352

Query: 32  STLLKCFGGL 3
            TLL  FG L
Sbjct: 353 CTLLNFFGDL 362


>ref|NP_193320.6| RNA helicase 1 [Arabidopsis thaliana]
           gi|334302879|sp|Q7FGZ2.3|RH1_ARATH RecName:
           Full=DEAD-box ATP-dependent RNA helicase 1
           gi|332658259|gb|AEE83659.1| RNA helicase 1 [Arabidopsis
           thaliana]
          Length = 522

 Score =  343 bits (881), Expect = 2e-92
 Identities = 174/248 (70%), Positives = 202/248 (81%), Gaps = 5/248 (2%)
 Frame = -3

Query: 737 PTRDLAFQVKQVFASIAPAVGLSVGLAVGQTCIADEISELIKRPKLEAGVCYDLEEQGVE 558
           PTRDLA QVK VF +IAPAVGLSVG AVGQ+ IA EIS+LIK PKL+AG+CYD ++    
Sbjct: 112 PTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQN 171

Query: 557 LQSSVDILVATPGRLMDHINTTKGFTLEHLRYLVVDETDRLLREAYQSWLPTMLQLTQSD 378
           L+S+VDILVATPGRLMDHIN TKGFTLEHLRYLVVDETDRLLREAYQSWLPT+LQLTQ+ 
Sbjct: 172 LESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTS 231

Query: 377 REDIFSH-----AKMFASLKTTRKSGVERGFKGKTYPRLVKMLLSATLTHDPSKLSQLDL 213
            + +F          F SL+T R+  VERGFKGK YPRLVKM+LSATLT DPSKL QLDL
Sbjct: 232 DDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDL 291

Query: 212 HHPLFLTTGSQRYQLPEKLKSYKLICESKLKPLCLIALLQDLKGEKCIVFTSSVESTHRL 33
           HHPLF+TTG  RY+LPEKL+  +LICE+ +KP+ L+ALL+  +GEKCI+FTSSVE+T RL
Sbjct: 292 HHPLFMTTGGSRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRL 351

Query: 32  STLLKCFG 9
             LL  FG
Sbjct: 352 CKLLNFFG 359


>emb|CAB45993.1| ATP-dependent RNA helicase like protein [Arabidopsis thaliana]
           gi|7268333|emb|CAB78627.1| ATP-dependent RNA helicase
           like protein [Arabidopsis thaliana]
          Length = 474

 Score =  343 bits (881), Expect = 2e-92
 Identities = 174/248 (70%), Positives = 202/248 (81%), Gaps = 5/248 (2%)
 Frame = -3

Query: 737 PTRDLAFQVKQVFASIAPAVGLSVGLAVGQTCIADEISELIKRPKLEAGVCYDLEEQGVE 558
           PTRDLA QVK VF +IAPAVGLSVG AVGQ+ IA EIS+LIK PKL+AG+CYD ++    
Sbjct: 64  PTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQN 123

Query: 557 LQSSVDILVATPGRLMDHINTTKGFTLEHLRYLVVDETDRLLREAYQSWLPTMLQLTQSD 378
           L+S+VDILVATPGRLMDHIN TKGFTLEHLRYLVVDETDRLLREAYQSWLPT+LQLTQ+ 
Sbjct: 124 LESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTS 183

Query: 377 REDIFSH-----AKMFASLKTTRKSGVERGFKGKTYPRLVKMLLSATLTHDPSKLSQLDL 213
            + +F          F SL+T R+  VERGFKGK YPRLVKM+LSATLT DPSKL QLDL
Sbjct: 184 DDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDL 243

Query: 212 HHPLFLTTGSQRYQLPEKLKSYKLICESKLKPLCLIALLQDLKGEKCIVFTSSVESTHRL 33
           HHPLF+TTG  RY+LPEKL+  +LICE+ +KP+ L+ALL+  +GEKCI+FTSSVE+T RL
Sbjct: 244 HHPLFMTTGGSRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRL 303

Query: 32  STLLKCFG 9
             LL  FG
Sbjct: 304 CKLLNFFG 311