BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00016614
         (1869 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containi...   632   e-179
ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containi...   620   e-175
ref|XP_002516618.1| pentatricopeptide repeat-containing protein,...   617   e-174
ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containi...   616   e-174
ref|XP_003588687.1| Pentatricopeptide repeat-containing protein ...   615   e-174

>ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
            mitochondrial [Vitis vinifera]
            gi|296081989|emb|CBI20994.3| unnamed protein product
            [Vitis vinifera]
          Length = 597

 Score =  632 bits (1631), Expect = e-179
 Identities = 314/493 (63%), Positives = 389/493 (78%), Gaps = 10/493 (2%)
 Frame = +2

Query: 272  GIQPGPNLLLTICKQFESSPKPLFTLFKWAVKQPSYCSAPPVLNLIIDLLGKSRDFDSAW 451
            GI+P   LL  I   F++SPKPLFTLF+WA+KQP + S+  + N +ID+L KSR FDSAW
Sbjct: 98   GIKPCSGLLQAIFSHFDASPKPLFTLFRWAMKQPGFESSMTLFNSMIDVLAKSRAFDSAW 157

Query: 452  SLLLDHF-------MVTNHTFALLIRRYARAGMPFAAIRTYQYVSSLEF---KCVDLDLF 601
             L+LD         +V+++TFA+LIRRYARAGM  +AIRT+++  SL+    +  +  LF
Sbjct: 158  LLVLDRIEGGEEPELVSSNTFAVLIRRYARAGMTLSAIRTFEFAFSLDSIRDRDSEWSLF 217

Query: 602  EVLLDTLCKEGHVRVASGCVTRRRGLDSEWVPTVRLYNILLNGWFRMRKLKHAERVWEEM 781
            ++LLD+LCKEGHVRVAS    ++RGLD  WVP++R+YN+LLNGWFR RKLK AE++W  M
Sbjct: 218  KILLDSLCKEGHVRVASEYFDQQRGLDPSWVPSIRVYNVLLNGWFRSRKLKRAEQLWRTM 277

Query: 782  RRENVVPTVVTYGTLVEGYCRMRRVEKAMELVGEMRREGIEPNAVVFNPIVDALGEAGRF 961
            +RENV PTVVTYGTLVEGYCRMRR EKA+ELVGEMR +GIEPN +V+NPI+D+L EAGRF
Sbjct: 278  KRENVKPTVVTYGTLVEGYCRMRRSEKAIELVGEMRGKGIEPNVIVYNPIIDSLAEAGRF 337

Query: 962  KEAMGMLERFSVLESGPTVSTYNSLVKGFCKAKDLVGASKILKMMIGRGFAPTPTTYNYF 1141
            KEAMGM+ER  V E+GPT+STYNSLVKGFCKA DLVGASK+LKMMI RGF PT TTYNYF
Sbjct: 338  KEAMGMMERCLVSETGPTISTYNSLVKGFCKAGDLVGASKVLKMMISRGFDPTLTTYNYF 397

Query: 1142 FRYFAKFGKIEEAMNLYTKIIGSGYVPDRLTYHLLIKMLCEEERLELVLQISKEMRARGH 1321
            FRYF++ GK EE MNLYTK+I SG+ PDRLTYHLLIKM+CEEERL+L +Q+SKEMRARG 
Sbjct: 398  FRYFSRCGKTEEGMNLYTKMIESGHTPDRLTYHLLIKMMCEEERLDLAVQVSKEMRARGC 457

Query: 1322 DSDLATSTMVIHLLCKLHRLEEACVEFEDMIHRGIVPQYLTYKKLTEDLKKSGMTVMAQK 1501
            D DLATSTM++HLLCK+HRLEEA  EFEDMI RGIVPQYLT++++   L+K G+T MA+K
Sbjct: 458  DLDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFERMNNALRKRGLTEMARK 517

Query: 1502 LSSQMSSLPHSTRLPNTYREGRDGSRQIRSSIIKKAQAMSDVLKISKDPRVLSKMKXXXX 1681
            L   M+S+PHS++LPNTY    D SR  ++SII++A+AMSD+LK   DPR L K +    
Sbjct: 518  LCDMMASVPHSSKLPNTYSGDGDASRARKTSIIQRAEAMSDILKTCNDPRELVKRRSSFE 577

Query: 1682 XXXXXXXXLIDDI 1720
                    LI+DI
Sbjct: 578  NTVLVADQLIEDI 590


>ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
            mitochondrial-like [Cucumis sativus]
            gi|449503560|ref|XP_004162063.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g11310,
            mitochondrial-like [Cucumis sativus]
          Length = 615

 Score =  620 bits (1600), Expect = e-175
 Identities = 319/568 (56%), Positives = 400/568 (70%), Gaps = 23/568 (4%)
 Frame = +2

Query: 86   SWLSSPGNPLIKWPTQTETEA------------PHH--DQLQPQSHPHQDCTTVYKXXXX 223
            SWLS+PG PL+KWP+  +  A            P+   D     S+   D +T+      
Sbjct: 39   SWLSTPGKPLVKWPSLPDQPANPLPSNSAVISNPNSAIDVKFEASYSPNDLSTISSILSD 98

Query: 224  XXXXXXXXXXXXXXXXGIQPGPNLLLTICKQFESSPKPLFTLFKWAVKQPSYCSAPPVLN 403
                            GI P  +LL  +   F+SSPK L +LF WA K+  +  +  + N
Sbjct: 99   RSVRPGAALEDALDRTGIVPSSSLLEAVFDHFDSSPKFLHSLFLWAAKKSGFRPSAALFN 158

Query: 404  LIIDLLGKSRDFDSAWSLLL-------DHFMVTNHTFALLIRRYARAGMPFAAIRTYQYV 562
             +I++L KSR+FDSAWSL+        + F+V+   F +LIRRYARAGM   AIRTY++ 
Sbjct: 159  RLINVLAKSREFDSAWSLITSRLRGGEESFLVSVEVFVILIRRYARAGMVQPAIRTYEFA 218

Query: 563  SSLEF--KCVDLDLFEVLLDTLCKEGHVRVASGCVTRRRGLDSEWVPTVRLYNILLNGWF 736
             +LE         LFE+LLD+LCKEGHVRVAS    R+R + S + P++R YNIL+NGWF
Sbjct: 219  CNLETISGTGSEGLFEILLDSLCKEGHVRVASEYFNRKREMGSSFEPSIRAYNILINGWF 278

Query: 737  RMRKLKHAERVWEEMRRENVVPTVVTYGTLVEGYCRMRRVEKAMELVGEMRREGIEPNAV 916
            R RKLKHA+R+W EM++  + PTVVTYGTL+EGYCRMR VE A+ELV EMRREGIEPNA+
Sbjct: 279  RSRKLKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAI 338

Query: 917  VFNPIVDALGEAGRFKEAMGMLERFSVLESGPTVSTYNSLVKGFCKAKDLVGASKILKMM 1096
            V+NPIVDALGEAGRFKEA+GM+ERF VLE GPT+STYNSLVKG+CKA DL GASKILKMM
Sbjct: 339  VYNPIVDALGEAGRFKEALGMMERFMVLEQGPTISTYNSLVKGYCKAGDLSGASKILKMM 398

Query: 1097 IGRGFAPTPTTYNYFFRYFAKFGKIEEAMNLYTKIIGSGYVPDRLTYHLLIKMLCEEERL 1276
            IGRGF PTPTTYNYFFR+F+K+GKIEE+M+LY K+I SGY PD+LTYHLL+KMLCEEERL
Sbjct: 399  IGRGFTPTPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEERL 458

Query: 1277 ELVLQISKEMRARGHDSDLATSTMVIHLLCKLHRLEEACVEFEDMIHRGIVPQYLTYKKL 1456
             L +Q+  EM+ARG D DLATSTM++HLLCK+H+ EEA  EFE MIHRGIVPQYLT+ +L
Sbjct: 459  NLAVQVCNEMKARGFDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRL 518

Query: 1457 TEDLKKSGMTVMAQKLSSQMSSLPHSTRLPNTYREGRDGSRQIRSSIIKKAQAMSDVLKI 1636
             ++  K G+T MA KL   MSS+PHS +LP+TY +  D  R  R+SI++KA+AMS++LK+
Sbjct: 519  HDEFMKRGLTKMASKLQEMMSSVPHSEKLPDTYNQTPDSIRARRTSIMRKAEAMSEMLKV 578

Query: 1637 SKDPRVLSKMKXXXXXXXXXXXXLIDDI 1720
             KDPR L K +            LIDDI
Sbjct: 579  CKDPRELVKRRSPSEDAVFSANKLIDDI 606


>ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223544438|gb|EEF45959.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 577

 Score =  617 bits (1590), Expect = e-174
 Identities = 312/487 (64%), Positives = 381/487 (78%), Gaps = 4/487 (0%)
 Frame = +2

Query: 272  GIQPGPNLLLTICKQFESSPKPLFTLFKWAVKQPSYCSAPPVLNLIIDLLGKSRDFDSAW 451
            GI+P  +LL  +   F SSPK L +LF WA KQP + S+  + N +I+ LGK ++FDSAW
Sbjct: 84   GIKPETSLLNAVFDHFNSSPKLLHSLFVWADKQPEFESSTTLFNSVINALGKMKEFDSAW 143

Query: 452  SLLLDHF-MVTNHTFALLIRRYARAGMPFAAIRTYQYVSSLEFKC-VDLD-LFEVLLDTL 622
             L+LD   +V++ TFA+LIRRY RAGMP +AIRT++Y  SL+F C  + D L E+LLD+L
Sbjct: 144  CLVLDRTGLVSSDTFAILIRRYTRAGMPQSAIRTFEYAISLDFICDYNCDALLEILLDSL 203

Query: 623  CKEGHVRVASGCVTRRRGLDSEWVPTVRLYNILLNGWFRMRKLKHAERVWEEMRRENVVP 802
            CKEGHVRVA      R+ LDS W+P VR+YNI+LNGWFR RKLKHAER+W EM++ NV P
Sbjct: 204  CKEGHVRVAKEYFDSRKQLDSCWIPHVRIYNIMLNGWFRSRKLKHAERLWLEMKKNNVSP 263

Query: 803  TVVTYGTLVEGYCRMRRVEKAMELVGEMRREGIEPNAVVFNPIVDALGEAGRFKEAMGML 982
            +VVTYGTLVEGYCRMRRVE+A+ELV  MR+EGIEPNA+V+NPI+DAL E GRFKE  GM+
Sbjct: 264  SVVTYGTLVEGYCRMRRVERAIELVDVMRKEGIEPNALVYNPIIDALAEEGRFKEVSGMM 323

Query: 983  ERFSVLESGPTVSTYNSLVKGFCKAKDLVGASKILKMMIGRGFAPTPTTYNYFFRYFAKF 1162
            E F   ESGPT+STYNSLVKG+CKAKD VGASK+LKMMI RGF PTPTTYNYFFR+F+KF
Sbjct: 324  EYFLQSESGPTISTYNSLVKGYCKAKDPVGASKVLKMMISRGFVPTPTTYNYFFRHFSKF 383

Query: 1163 GKIEEAMNLYTKIIGSGYVPDRLTYHLLIKMLCEEERLELVLQISKEMRARGHDSDLATS 1342
            G IEE MNLYTK+I SGY PDRLT+HLL+KMLCEEERL+L +QISKEMR+RG D DLATS
Sbjct: 384  GMIEEGMNLYTKMIESGYTPDRLTFHLLLKMLCEEERLDLAVQISKEMRSRGCDMDLATS 443

Query: 1343 TMVIHLLCKLHRLEEACVEFEDMIHRGIVPQYLTYKKLTEDLKKSGMTVMAQKLSSQMSS 1522
            TM+IHL C++HR EEA +EFEDMI +GIVPQYLT+++L ++L+K GM   A+KLS  MSS
Sbjct: 444  TMLIHLFCRMHRFEEAFMEFEDMIQKGIVPQYLTFQRLNDELRKRGMVERARKLSDMMSS 503

Query: 1523 LPHSTRLPNTYR-EGRDGSRQIRSSIIKKAQAMSDVLKISKDPRVLSKMKXXXXXXXXXX 1699
            +PHST LPNTY  EG    R  RSSI++KA+AMS +LK   DPR L K+K          
Sbjct: 504  VPHSTNLPNTYSVEGDALRRARRSSILQKAEAMSKILKTCNDPRELVKLKSSSQNPITSA 563

Query: 1700 XXLIDDI 1720
              LI++I
Sbjct: 564  IQLIENI 570


>ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
            mitochondrial-like [Glycine max]
          Length = 622

 Score =  616 bits (1588), Expect = e-174
 Identities = 323/591 (54%), Positives = 406/591 (68%), Gaps = 23/591 (3%)
 Frame = +2

Query: 17   PSSQKNKVRMLRKRSPTFLRHFSSWLSSPGNPLIKWPTQTETEAPHHDQLQPQSHPHQD- 193
            P+   N  R    R+ T     SSWLS PGNP+I+WP+    +   +    P  +P  D 
Sbjct: 26   PNPNPNPNRTPPIRASTHRPFSSSWLSEPGNPIIQWPSLPPPKPTPNPNPNPNLNPTPDP 85

Query: 194  -------CTTVYKXXXXXXXXXXXXXXXXXXXXGIQPGPNLLLTICKQFESSPKPLFTLF 352
                    + +                      GI+P P LLL +  +F SSPK L +LF
Sbjct: 86   PSPNPNALSVISNLFADPSLSPGPALHAELDRAGIEPDPALLLAVFDRFGSSPKLLHSLF 145

Query: 353  KWAVKQPSYCSAPPVLNLIIDLLGKSRDFDSAWSLLLDHF------------MVTNHTFA 496
             WA  +P++   P + + +++ L K+R+FD+AW L+L H             +V+  TFA
Sbjct: 146  LWAQTRPAFRPGPKLFDAVVNALAKAREFDAAWKLVLHHAEKDGEEEGEKERLVSVGTFA 205

Query: 497  LLIRRYARAGMPFAAIRTYQYVS---SLEFKCVDLDLFEVLLDTLCKEGHVRVASGCVTR 667
            ++IRRYARAGM   AIRTY++ +   S+     ++ L E+L+D+LCKEG VR AS     
Sbjct: 206  IMIRRYARAGMSKLAIRTYEFATNNKSIVDSGSEMSLLEILMDSLCKEGSVREASEYFLW 265

Query: 668  RRGLDSEWVPTVRLYNILLNGWFRMRKLKHAERVWEEMRRENVVPTVVTYGTLVEGYCRM 847
            ++ LD  WVP++R+YNI+LNGWFR+RKLK  ER+W EM+ EN+ PTVVTYGTLVEGYCRM
Sbjct: 266  KKELDLSWVPSIRVYNIMLNGWFRLRKLKQGERLWAEMK-ENMRPTVVTYGTLVEGYCRM 324

Query: 848  RRVEKAMELVGEMRREGIEPNAVVFNPIVDALGEAGRFKEAMGMLERFSVLESGPTVSTY 1027
            RRVEKA+E+VG+M +EGI PNA+V+NPI+DAL EAGRFKEA+GMLERF VLE GPT STY
Sbjct: 325  RRVEKALEMVGDMTKEGIAPNAIVYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDSTY 384

Query: 1028 NSLVKGFCKAKDLVGASKILKMMIGRGFAPTPTTYNYFFRYFAKFGKIEEAMNLYTKIIG 1207
            NSLVKGFCKA DLVGASKILKMMI RGF P+ TTYNYFFRYF++  KIEE MNLYTK+I 
Sbjct: 385  NSLVKGFCKAGDLVGASKILKMMISRGFLPSATTYNYFFRYFSRCRKIEEGMNLYTKLIQ 444

Query: 1208 SGYVPDRLTYHLLIKMLCEEERLELVLQISKEMRARGHDSDLATSTMVIHLLCKLHRLEE 1387
            SGY PDRLTYHLL+KMLCEEE+L+L +Q+SKEMR  G+D DLATSTM++HLLCK+ RLEE
Sbjct: 445  SGYTPDRLTYHLLVKMLCEEEKLDLAVQVSKEMRHNGYDMDLATSTMLVHLLCKVRRLEE 504

Query: 1388 ACVEFEDMIHRGIVPQYLTYKKLTEDLKKSGMTVMAQKLSSQMSSLPHSTRLPNTYREGR 1567
            A VEFEDMI RGIVPQYLT++++  DLKK GMT MAQKL   MSS+P+S  LPNTY E R
Sbjct: 505  AFVEFEDMIRRGIVPQYLTFQRMKADLKKQGMTEMAQKLCKLMSSVPYSPNLPNTYGEVR 564

Query: 1568 DGSRQIRSSIIKKAQAMSDVLKISKDPRVLSKMKXXXXXXXXXXXXLIDDI 1720
            + +   R SII+KA+A SD+LK  KDP  L K +            LI+DI
Sbjct: 565  EDAYARRKSIIRKAKAFSDMLKDCKDPSELRKHRSSSENTVSSTNSLIEDI 615


>ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355477735|gb|AES58938.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 587

 Score =  615 bits (1587), Expect = e-174
 Identities = 315/558 (56%), Positives = 398/558 (71%), Gaps = 22/558 (3%)
 Frame = +2

Query: 62   PTFLRHFSSWLSSPGNPLIKWPTQTETEAP----------HHDQLQPQSHPHQDCTTVYK 211
            P  LR FSSWLS PGNPLI WP+      P            +  QP   P+ D T +  
Sbjct: 20   PIHLRPFSSWLSQPGNPLINWPSLPSKPTPIPTLNPNPNSKPESSQPTFSPN-DFTLIST 78

Query: 212  XXXXXXXXXXXXXXXXXXXXGIQPGPNLLLTICKQFESSPKPLFTLFKWAVKQPSYCSAP 391
                                GI+P P LL  +   F SSPK L +L+ WA+ QP +    
Sbjct: 79   LFTNPSISPGSSLLTNLTQTGIKPTPPLLHAVFDHFASSPKLLHSLYLWALNQPGFKPDS 138

Query: 392  PVLNLIIDLLGKSRDFDSAWSLLLDHF---------MVTNHTFALLIRRYARAGMPFAAI 544
             + + +I+ L K ++FD AWSL+LD           +V+  TFA++IRRYARAGM  AAI
Sbjct: 139  SLFDSVINALAKMKEFDDAWSLVLDRIRRDDDDDEKLVSVGTFAIIIRRYARAGMHKAAI 198

Query: 545  RTYQYVS---SLEFKCVDLDLFEVLLDTLCKEGHVRVASGCVTRRRGLDSEWVPTVRLYN 715
            RT+++     S+     ++ LFE+L+D+LCKEG  R AS  + RR+  D  WVP++R+YN
Sbjct: 199  RTFEFAKDKKSIVDSVSEMSLFEILIDSLCKEGSAREASEYLLRRKETDLGWVPSIRVYN 258

Query: 716  ILLNGWFRMRKLKHAERVWEEMRRENVVPTVVTYGTLVEGYCRMRRVEKAMELVGEMRRE 895
            I+LNGWFR RKLKHAER+WEEM+ ENV P+VVTYGTLVEGYCRMRRVEKA+E+VGEM +E
Sbjct: 259  IMLNGWFRARKLKHAERLWEEMKNENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKE 318

Query: 896  GIEPNAVVFNPIVDALGEAGRFKEAMGMLERFSVLESGPTVSTYNSLVKGFCKAKDLVGA 1075
            GI+PNA+V+NPI+DAL EAGRFKEA+GM+ERF VL+ GPT+STYNSLVKGFCKA D+ GA
Sbjct: 319  GIKPNAIVYNPIIDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDIEGA 378

Query: 1076 SKILKMMIGRGFAPTPTTYNYFFRYFAKFGKIEEAMNLYTKIIGSGYVPDRLTYHLLIKM 1255
            SKILK MI RGF P PTTYNYFFRYF++ GK++E MNLYTK+I SG+ PDRLTYHL++KM
Sbjct: 379  SKILKKMISRGFLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKM 438

Query: 1256 LCEEERLELVLQISKEMRARGHDSDLATSTMVIHLLCKLHRLEEACVEFEDMIHRGIVPQ 1435
            LCEEE+LEL +Q+S EMR +G+D DLATSTM+ HLLCK+H+LEEA  EFEDMI RGI+PQ
Sbjct: 439  LCEEEKLELAVQVSMEMRHKGYDMDLATSTMLTHLLCKMHKLEEAFAEFEDMIRRGIIPQ 498

Query: 1436 YLTYKKLTEDLKKSGMTVMAQKLSSQMSSLPHSTRLPNTYREGRDGSRQIRSSIIKKAQA 1615
            YLT++KL  +LKK GM  MA+KL   MSS+P+S +LPNTY E RD +   R SII+KA+A
Sbjct: 499  YLTFQKLNVELKKQGMNEMARKLCHLMSSVPYSDKLPNTYGEVRDDAHARRKSIIQKAKA 558

Query: 1616 MSDVLKISKDPRVLSKMK 1669
            +S++L   KDP+ L K +
Sbjct: 559  VSELL---KDPKELDKFR 573