BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00016569
         (1276 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...    99   2e-18
gb|EEE68778.1| hypothetical protein OsJ_27492 [Oryza sativa Japo...    96   2e-17
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...    95   4e-17
gb|AAF17675.1|AC009243_2 F28K19.3 [Arabidopsis thaliana]               92   4e-16
ref|XP_002450418.1| hypothetical protein SORBIDRAFT_05g005061 [S...    92   4e-16

>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
            Japonica Group]
          Length = 1382

 Score = 99.0 bits (245), Expect = 2e-18
 Identities = 55/147 (37%), Positives = 75/147 (51%), Gaps = 2/147 (1%)
 Frame = +1

Query: 841  NMIVAW--NCRRAGSSSTVQHLMDLIRQYQPDVICLSEVKVKEKRILAVAKQLKFEGVFC 1014
            N +V W  NCR  GS++TV  L  L++  +P ++ LSE K+++K+   +   L F G F 
Sbjct: 4    NKLVTWGRNCRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMWSLGFSGSFA 63

Query: 1015 VPAVGLRGGLAVFWKSGVNLEIIGATNNQVTGKFVDYHASVPWFFSLVYGEPISSNRHKV 1194
            V   GL GGLA+FW +   + + G  N+      V      PW  S VYGEP    RH  
Sbjct: 64   VSCEGLSGGLALFWTTAYTVSLRG-FNSHFIDVLVSTEELPPWRISFVYGEPKRELRHFF 122

Query: 1195 WKEIRELAPYILDPWLLFGDFNAITSL 1275
            W  +R L      PWL  GDFN +  L
Sbjct: 123  WNLLRRLHDQWRGPWLCCGDFNEVLCL 149


>gb|EEE68778.1| hypothetical protein OsJ_27492 [Oryza sativa Japonica Group]
          Length = 1170

 Score = 95.9 bits (237), Expect = 2e-17
 Identities = 45/145 (31%), Positives = 75/145 (51%)
 Frame = +1

Query: 826  SVTHTNMIVAWNCRRAGSSSTVQHLMDLIRQYQPDVICLSEVKVKEKRILAVAKQLKFEG 1005
            S+   N+ ++WNCR  G    VQ L+ +++ ++P V+ LSE +  +  +  +  Q+   G
Sbjct: 87   SIAGPNVFLSWNCRGLGRPRAVQELVCMVQTHRPKVVFLSETRQNQGFVENIKWQIGLRG 146

Query: 1006 VFCVPAVGLRGGLAVFWKSGVNLEIIGATNNQVTGKFVDYHASVPWFFSLVYGEPISSNR 1185
               V  +G  GG+A+FW   VN+ I       +     + +   PW  + VYGEP + +R
Sbjct: 147  CLAVNGIGKGGGIALFWDESVNVTIKSYNLRHIDAVITEQNQD-PWRATFVYGEPKAQDR 205

Query: 1186 HKVWKEIRELAPYILDPWLLFGDFN 1260
            H +W  +R +     DPWL+  DFN
Sbjct: 206  HLMWTLLRRIKQNTSDPWLMIRDFN 230


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
            thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
            reverse transcriptase [Arabidopsis thaliana]
          Length = 1333

 Score = 94.7 bits (234), Expect = 4e-17
 Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 2/142 (1%)
 Frame = +1

Query: 847  IVAWNCRRAGSSS--TVQHLMDLIRQYQPDVICLSEVKVKEKRILAVAKQLKFEGVFCVP 1020
            +V+WNC+  G S   T+  LM++   + P+V+ L E K     ++ + + L +E VF V 
Sbjct: 3    LVSWNCQGLGWSQDLTIPRLMEMRLSHFPEVLFLMETKNCSNVVVDLQEWLGYERVFTVN 62

Query: 1021 AVGLRGGLAVFWKSGVNLEIIGATNNQVTGKFVDYHASVPWFFSLVYGEPISSNRHKVWK 1200
             +GL GGLA+FWK GV++ I  A  N +   F     S  ++ S VYG P  S++H VW+
Sbjct: 63   PIGLSGGLALFWKKGVDIVIKYADKNLI--DFQIQFGSHEFYVSCVYGNPAFSDKHLVWE 120

Query: 1201 EIRELAPYILDPWLLFGDFNAI 1266
            +I  +     +PW + GDFN I
Sbjct: 121  KITRIGINRKEPWCMLGDFNPI 142


>gb|AAF17675.1|AC009243_2 F28K19.3 [Arabidopsis thaliana]
          Length = 238

 Score = 91.7 bits (226), Expect = 4e-16
 Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 1/140 (0%)
 Frame = +1

Query: 850  VAWNCRRAGSSSTVQHLMDLIRQYQPDVICLSEVKVKEKRILAVAKQLKFEGVFCVPAVG 1029
            + WNC+  G   TV+ L ++ R+Y PDVICLSE K +   +     +L F     VP++G
Sbjct: 57   LCWNCQGLGIDLTVRRLKEINRKYLPDVICLSETKQRNDYVRDTCCELGFSNFVMVPSMG 116

Query: 1030 LRGGLAVFWKSGVNLEIIGATNNQVTGKFVDYHASVPWFFSLVYGEPISSNRHKVWKEIR 1209
            L GGL V WK  V++ +   + N V   +V  +  V +  S VYG P  S+R+ +W+ + 
Sbjct: 117  LSGGLVVLWKPSVHISVSFNSPNLV-DCYVQSN-EVGFNLSFVYGHPNPSHRNNLWERLE 174

Query: 1210 ELAPYIL-DPWLLFGDFNAI 1266
             LA      PW + GDFN +
Sbjct: 175  RLAVNRNGQPWFILGDFNEL 194


>ref|XP_002450418.1| hypothetical protein SORBIDRAFT_05g005061 [Sorghum bicolor]
            gi|241936261|gb|EES09406.1| hypothetical protein
            SORBIDRAFT_05g005061 [Sorghum bicolor]
          Length = 753

 Score = 91.7 bits (226), Expect = 4e-16
 Identities = 46/139 (33%), Positives = 73/139 (52%)
 Frame = +1

Query: 850  VAWNCRRAGSSSTVQHLMDLIRQYQPDVICLSEVKVKEKRILAVAKQLKFEGVFCVPAVG 1029
            + WNCR  G+ +TV+ L DL + Y P V+ + E ++ + R+  +   L F+  F V + G
Sbjct: 4    LCWNCRGIGNPATVKELRDLAKDYAPSVMFIMETQISKYRVENLRYTLSFDNSFAVNSSG 63

Query: 1030 LRGGLAVFWKSGVNLEIIGATNNQVTGKFVDYHASVPWFFSLVYGEPISSNRHKVWKEIR 1209
              GGL +FW + V L I   +N  +    +  H   P   S +YGEP  S R++ W  ++
Sbjct: 64   RSGGLGLFWNNDVLLSIQKYSNYHI-DTIISEHGKEPRRMSFIYGEPNRSFRYRTWDIMK 122

Query: 1210 ELAPYILDPWLLFGDFNAI 1266
            ++      PW+  GDFN I
Sbjct: 123  QMRSDTDLPWVCMGDFNEI 141