BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00016533
         (1234 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...   103   7e-20
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]    99   3e-18
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...    96   1e-17
emb|CAN67605.1| hypothetical protein VITISV_030993 [Vitis vinifera]    91   5e-16
ref|XP_002305539.1| f-box family protein [Populus trichocarpa] g...    91   6e-16

>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score =  103 bits (258), Expect = 7e-20
 Identities = 96/322 (29%), Positives = 153/322 (47%), Gaps = 9/322 (2%)
 Frame = -3

Query: 1232 LVTVNSFGDIQLLHPFARKVISLAPVTALPGVVSCYYNERQNLVYDVKNYGSVCTIASNC 1053
            L+ ++   +I LL+P  R  + L P++  P VV   + +         + G V T +   
Sbjct: 97   LLILDEAPEIFLLNPLTRSKVHLPPLSTFPNVVRFNFADVGREYALRTSSGDVYTRSLKK 156

Query: 1052 MREFYIYKAVML--PCAG---VVMVIHGLNKMLAFCKVSDENKKWISVEGCEGNFNDVTI 888
            MR+ +I K ++   P  G   + +VI      LA C+ SD++  W  +E  +    DV  
Sbjct: 157  MRDSFIKKTILSSSPANGSDFIAVVILNQTGDLALCRKSDDS--WTFLEDAQSYAEDVIF 214

Query: 887  FKGEFYAVKHNGSVYVVCGGFDTSLTPFVKFVIGQPVNWGYYKKYLVEARGELFLLDR-- 714
             +G FYAV   GS+  VC    +S  P V  +I  P  +G   +YLVE+  EL L+ R  
Sbjct: 215  HRGLFYAVNKYGSI-AVCDVSGSS--PRVS-IIEMPQQFGGDLQYLVESGEELLLVTRYL 270

Query: 713  -IRYQLQPGHDEAD-RTLVFSIKKIIDLNGKIIELNEPKFVSVDYIGKDCAVFVGWNNSF 540
             + Y ++P       RT  F + ++        +L  P++  V  +G D A+F+G N S 
Sbjct: 271  DLTYDVEPDQTSLIYRTTRFQVCRL--------DLKAPRWEVVSSLG-DRALFLGENLSL 321

Query: 539  ARLTSDVPDCKGNSIYFTDDFVDGVSDMNNVNIGSILENFVNEPIGRQDIGAWDMKANVF 360
            +  + D P CKGN IY+TDD+    S+ N   IG           G QD+G ++++    
Sbjct: 322  SLSSVDFPGCKGNCIYYTDDY----SEDNYDGIG-----------GEQDLGIFNLEDGSI 366

Query: 359  DRLIYPSASKLMNPPPVWFTTN 294
            + L   S  ++  PPP+W T N
Sbjct: 367  EPLPC-SHFRIRWPPPLWVTPN 387


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score = 98.6 bits (244), Expect = 3e-18
 Identities = 96/319 (30%), Positives = 152/319 (47%), Gaps = 6/319 (1%)
 Frame = -3

Query: 1232 LVTVNSFGDIQLLHPFARKVISLAPVTALPGVVSCYYNERQNLVYDVKNYGSVCTIASNC 1053
            L+ ++   +I LL+P  R  + L P++  P VV   + +         + G V T +   
Sbjct: 97   LLILDEAPEIFLLNPLTRSKVHLPPLSTFPNVVRFNFADVGREYALRTSSGDVYTRSLKK 156

Query: 1052 MREFYIYKAVML--PCAG---VVMVIHGLNKMLAFCKVSDENKKWISVEGCEGNFNDVTI 888
            MR+ +I K ++   P  G   + +VI      LA C+ SD++  W  +E  +    DV  
Sbjct: 157  MRDSFIKKTILSSSPANGSDFIAVVILNQTGDLALCRKSDDS--WTFLEDAQSYSEDVIF 214

Query: 887  FKGEFYAVKHNGSVYVVCGGFDTSLTPFVKFVIGQPVNWGYYKKYLVEARGELFLLDRIR 708
             +G FYAV   GS+  VC    +S  P V  +I  P  +G   +YLVE+  EL L+ R  
Sbjct: 215  HRGLFYAVNKYGSI-AVCDVSGSS--PRVS-IIEMPQQFGGDLQYLVESGEELLLVTRY- 269

Query: 707  YQLQPGHD-EADRTLVFSIKKIIDLNGKIIELNEPKFVSVDYIGKDCAVFVGWNNSFARL 531
              L   +D E D+T +  I +        ++   P++  V  +G D A+F+G N S +  
Sbjct: 270  --LDLTYDVEXDQTSL--IYRTTRFQVCRLDSKAPRWEVVSSLG-DRALFLGENLSLSLS 324

Query: 530  TSDVPDCKGNSIYFTDDFVDGVSDMNNVNIGSILENFVNEPIGRQDIGAWDMKANVFDRL 351
            + D P CKGN IY+TDD+    S+ N   IG           G QD+G ++++    + L
Sbjct: 325  SVDFPGCKGNCIYYTDDY----SEDNYDGIG-----------GEQDLGIFNLEDGSIEPL 369

Query: 350  IYPSASKLMNPPPVWFTTN 294
               S  ++  PPP+W T N
Sbjct: 370  PC-SHFRIRWPPPLWVTPN 387


>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
            gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
            putative [Ricinus communis]
          Length = 398

 Score = 96.3 bits (238), Expect = 1e-17
 Identities = 90/323 (27%), Positives = 150/323 (46%), Gaps = 10/323 (3%)
 Frame = -3

Query: 1232 LVTVNSFGDIQLLHPFARKVISLAPVTALPGVVSCYYNERQNLVYDVKNY-GSVCTIASN 1056
            L+ ++    I L++P  R  +SL P+++ P V+S  Y++     Y ++N  G   T++  
Sbjct: 100  LMILDDTPTILLINPLTRAKLSLPPLSSFPNVISFNYSDIGR-EYALRNLLGERVTVSLR 158

Query: 1055 CMREFYIYKAVMLPCA-----GVVMVIHGLNKMLAFCKVSDENKKWISVEGCEGNFNDVT 891
             MR+ +I K V+          VV+ I      LA+C+  D  K W  VE       DV 
Sbjct: 159  QMRDSFIRKVVLSSSPLKDNNFVVIAILNQTDDLAYCRNGD--KSWSLVENARSFCEDVI 216

Query: 890  IFKGEFYAVKHNGSVYVVCGGFDTSLTPFVKFVIGQPVNWGYYKKYLVEARGELFLLDR- 714
               G FYAV   G + V+C    +S +P V F+   P   G   +YLV +  EL L+ R 
Sbjct: 217  FVNGMFYAVNKAGQI-VICD--ISSDSPRVSFM-ETPRQAGGDMQYLVNSGDELLLVTRY 272

Query: 713  IRYQLQPGHDEADRTLVFSIKKIIDLNGKIIELNEPKFVSVDYIGKDCAVFVGWNNSFAR 534
            +  + +  H + +  L++   + I      ++ N P+++ +  +G D A+F+G N+S + 
Sbjct: 273  LDLEYEFDHPDMEPHLIY---RTIRFEVFRLDWNGPQWLRMSTLG-DKALFIGENSSLSL 328

Query: 533  LTSDVPDCKGNSIYFTDDFVDGVSDMNNVNIGSILENFVNEPIGRQDIGAWDMKANVFDR 354
              +D   C GN IY+TDD++D   D +                G  D+G + +     + 
Sbjct: 329  SATDFSGCMGNCIYYTDDYLDANYDGH---------------FGDHDLGIFKLCDETIEP 373

Query: 353  L-IYPS--ASKLMNPPPVWFTTN 294
            L  YP    S L   PP+W + N
Sbjct: 374  LPCYPRNFTSPLQWSPPLWVSPN 396


>emb|CAN67605.1| hypothetical protein VITISV_030993 [Vitis vinifera]
          Length = 1290

 Score = 91.3 bits (225), Expect = 5e-16
 Identities = 84/288 (29%), Positives = 131/288 (45%), Gaps = 6/288 (2%)
 Frame = -3

Query: 1232 LVTVNSFGDIQLLHPFARKVISLAPVTALPGVVSCYYNERQNLVYDVKNYGSVCTIASNC 1053
            LVT+ +  D+ LL+P  R  I L  + A P +         N + D    GS        
Sbjct: 1014 LVTIGTDLDMCLLNPLTRVQILLPSLRACPNL---------NTLIDSSTQGSRS------ 1058

Query: 1052 MREFYIYKAVMLPCAG----VVMVIHGLNKMLAFCKVSDENKKWISVEGCEGNFNDVTIF 885
             ++ +IYKAV+          VM+I+     LAF K   +   W  +E   G  +D+  F
Sbjct: 1059 -KDIFIYKAVLSSAPSSPDCAVMIIYSDYGRLAFTKPGHQT--WTLLESESGPVDDIIYF 1115

Query: 884  KGEFYAVKHNGSVYVV-CGGFDTSLTPFVKFVIGQPVNWGYYK-KYLVEARGELFLLDRI 711
             G F AV  +  V++    G       F      Q V+   Y+ KYLVE+ GE++++ R 
Sbjct: 1116 NGSFLAVNLSWEVWICDISGSQLKTIRFAAAPALQDVDEIEYEAKYLVESGGEIYMVTRN 1175

Query: 710  RYQLQPGHDEADRTLVFSIKKIIDLNGKIIELNEPKFVSVDYIGKDCAVFVGWNNSFARL 531
             Y          RT  FS+ K+   N +  E+      ++D+    C+ F+G N+SF+  
Sbjct: 1176 LYDTARRDIPYMRTWTFSVLKLDMCNKRWEEVE-----NLDH----CSFFLGNNHSFSTW 1226

Query: 530  TSDVPDCKGNSIYFTDDFVDGVSDMNNVNIGSILENFVNEPIGRQDIG 387
             SD P+ + NSIYFTDD+   ++   N ++G  + NF N  I    +G
Sbjct: 1227 ASDYPEFRKNSIYFTDDYCGFLNIPRNFDMG--IYNFQNTQIEHYPVG 1272


>ref|XP_002305539.1| f-box family protein [Populus trichocarpa]
            gi|222848503|gb|EEE86050.1| f-box family protein [Populus
            trichocarpa]
          Length = 469

 Score = 90.9 bits (224), Expect = 6e-16
 Identities = 76/247 (30%), Positives = 122/247 (49%), Gaps = 14/247 (5%)
 Frame = -3

Query: 1004 VVMVIHGLNKMLAFCKVSDENKKWISVEGCEGNFNDVTIFKGEFYAVKHNGSVYVVCGGF 825
            V++ IH   K+  F      +K+W  +      F+DV ++KG FYAV + G   VV    
Sbjct: 175  VLLTIHVSGKLAIF---KSGDKRWTIINEMPSPFDDVIVYKGRFYAVDNTGRTVVV--AM 229

Query: 824  DTSLTPFVKFVIGQPVNWGYYKKYLVEARGELFLLDRI-----RYQLQPGHD-------- 684
            DT+L      ++G PV +G  KKYLVE++G+L L+D          L  GHD        
Sbjct: 230  DTNLG-----LVGNPV-FGGDKKYLVESKGDLLLVDMYLSIDSDEGLSIGHDVVQDLVQY 283

Query: 683  EADRTLVFSIKKIIDLNGKIIELNEPKFVSVDYIGKDCAVFVGWNNSFARLTSDVPDCKG 504
             ++RT+ F + K+ +     IE+N+          +D  +F+G + +F+   S++  CKG
Sbjct: 284  MSERTVWFKVFKLNEEGKCWIEVNDL---------EDRVLFLGDDLTFSASASELSGCKG 334

Query: 503  NSIYFTDDFVDGVSDMNNVNIGSILENFVNEPIGRQDIGAWDMKANVFDRL-IYPSASKL 327
            N I+F DDF     + ++   GS+         GR DIG +++++     L  +P  SK+
Sbjct: 335  NCIFFNDDFFYSRGEGDD---GSL--------FGR-DIGVFELESGCIGPLRNFPDNSKM 382

Query: 326  MNPPPVW 306
              PPP W
Sbjct: 383  FWPPPDW 389