BLASTX nr result
ID: Coptis25_contig00016522
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00016522 (242 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana] 97 2e-18 ref|NP_188886.1| pentatricopeptide repeat-containing protein [Ar... 97 2e-18 ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat... 96 4e-18 ref|NP_001031033.1| pentatricopeptide repeat-containing protein ... 95 5e-18 ref|XP_002885504.1| pentatricopeptide repeat-containing protein ... 94 1e-17 >dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana] Length = 648 Score = 96.7 bits (239), Expect = 2e-18 Identities = 44/80 (55%), Positives = 58/80 (72%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 L EMI R +APDTITYNSL+DG C + + EA +FDLMV G EP+IV+Y+ +IN YC Sbjct: 366 LYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYC 425 Query: 181 KAKRLDEAMQLYENLKCKCL 240 KAKR+D+ M+L+ + K L Sbjct: 426 KAKRVDDGMRLFREISSKGL 445 Score = 68.2 bits (165), Expect = 7e-10 Identities = 28/78 (35%), Positives = 54/78 (69%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 +L EMI RN+ PD +T+++L+D +G++ EA +++ M+ G+ P+ ++YN++I+G+C Sbjct: 331 MLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC 390 Query: 181 KAKRLDEAMQLYENLKCK 234 K L EA Q+++ + K Sbjct: 391 KENCLHEANQMFDLMVSK 408 Score = 62.4 bits (150), Expect = 4e-08 Identities = 25/76 (32%), Positives = 49/76 (64%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 L E+ + + P+TITYN+L+ G C G++ A +F MV G+ P++V+Y +++G C Sbjct: 436 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 495 Query: 181 KAKRLDEAMQLYENLK 228 L++A++++E ++ Sbjct: 496 DNGELNKALEIFEKMQ 511 Score = 60.8 bits (146), Expect = 1e-07 Identities = 27/64 (42%), Positives = 45/64 (70%) Frame = +1 Query: 34 PDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYCKAKRLDEAMQL 213 PDTIT+++L++G CL+GR+ EA + D MV+ P++V+ +T+ING C R+ EA+ L Sbjct: 167 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 226 Query: 214 YENL 225 + + Sbjct: 227 IDRM 230 Score = 60.5 bits (145), Expect = 1e-07 Identities = 28/78 (35%), Positives = 45/78 (57%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 L +EM+ R V P +TY L+DG C G + +A +F+ M + + I YN +I+G C Sbjct: 471 LFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMC 530 Query: 181 KAKRLDEAMQLYENLKCK 234 A ++D+A L+ +L K Sbjct: 531 NASKVDDAWSLFCSLSDK 548 Score = 58.2 bits (139), Expect = 7e-07 Identities = 25/76 (32%), Positives = 48/76 (63%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 L++ M++ PD +T ++L++G CL+GR+ EA + D MV+ G +P+ V+Y ++N C Sbjct: 191 LVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLC 250 Query: 181 KAKRLDEAMQLYENLK 228 K+ A+ L+ ++ Sbjct: 251 KSGNSALALDLFRKME 266 >ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22470, mitochondrial; Flags: Precursor gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana] gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana] gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 619 Score = 96.7 bits (239), Expect = 2e-18 Identities = 44/80 (55%), Positives = 58/80 (72%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 L EMI R +APDTITYNSL+DG C + + EA +FDLMV G EP+IV+Y+ +IN YC Sbjct: 337 LYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYC 396 Query: 181 KAKRLDEAMQLYENLKCKCL 240 KAKR+D+ M+L+ + K L Sbjct: 397 KAKRVDDGMRLFREISSKGL 416 Score = 68.2 bits (165), Expect = 7e-10 Identities = 28/78 (35%), Positives = 54/78 (69%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 +L EMI RN+ PD +T+++L+D +G++ EA +++ M+ G+ P+ ++YN++I+G+C Sbjct: 302 MLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC 361 Query: 181 KAKRLDEAMQLYENLKCK 234 K L EA Q+++ + K Sbjct: 362 KENCLHEANQMFDLMVSK 379 Score = 62.4 bits (150), Expect = 4e-08 Identities = 25/76 (32%), Positives = 49/76 (64%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 L E+ + + P+TITYN+L+ G C G++ A +F MV G+ P++V+Y +++G C Sbjct: 407 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 466 Query: 181 KAKRLDEAMQLYENLK 228 L++A++++E ++ Sbjct: 467 DNGELNKALEIFEKMQ 482 Score = 60.8 bits (146), Expect = 1e-07 Identities = 27/64 (42%), Positives = 45/64 (70%) Frame = +1 Query: 34 PDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYCKAKRLDEAMQL 213 PDTIT+++L++G CL+GR+ EA + D MV+ P++V+ +T+ING C R+ EA+ L Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 197 Query: 214 YENL 225 + + Sbjct: 198 IDRM 201 Score = 60.5 bits (145), Expect = 1e-07 Identities = 28/78 (35%), Positives = 45/78 (57%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 L +EM+ R V P +TY L+DG C G + +A +F+ M + + I YN +I+G C Sbjct: 442 LFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMC 501 Query: 181 KAKRLDEAMQLYENLKCK 234 A ++D+A L+ +L K Sbjct: 502 NASKVDDAWSLFCSLSDK 519 Score = 58.2 bits (139), Expect = 7e-07 Identities = 25/76 (32%), Positives = 48/76 (63%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 L++ M++ PD +T ++L++G CL+GR+ EA + D MV+ G +P+ V+Y ++N C Sbjct: 162 LVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLC 221 Query: 181 KAKRLDEAMQLYENLK 228 K+ A+ L+ ++ Sbjct: 222 KSGNSALALDLFRKME 237 >ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial-like [Vitis vinifera] Length = 592 Score = 95.5 bits (236), Expect = 4e-18 Identities = 41/75 (54%), Positives = 57/75 (76%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 +++ MIQR V PD +TY +LMDG CL+ M+EA VFD MV G PN++SY+T+INGYC Sbjct: 306 VVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYC 365 Query: 181 KAKRLDEAMQLYENL 225 K +R+D+AM L+E + Sbjct: 366 KIQRIDKAMYLFEEM 380 Score = 65.1 bits (157), Expect = 6e-09 Identities = 29/76 (38%), Positives = 50/76 (65%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 L EEM QR + P+ +TYN+L+ G C GR+ +A +F MV +G P++V+Y +++ C Sbjct: 376 LFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLC 435 Query: 181 KAKRLDEAMQLYENLK 228 K + LD+AM + + ++ Sbjct: 436 KTRHLDQAMAMLKAIE 451 Score = 62.8 bits (151), Expect = 3e-08 Identities = 22/75 (29%), Positives = 49/75 (65%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 L+ EM+ + P+ + + +L+D C +G + A +V D+M+ G+EP++V+Y +++G+C Sbjct: 271 LMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHC 330 Query: 181 KAKRLDEAMQLYENL 225 +DEA ++++ + Sbjct: 331 LRSEMDEADKVFDTM 345 Score = 60.5 bits (145), Expect = 1e-07 Identities = 28/75 (37%), Positives = 45/75 (60%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 +L+ + N+APD +YN ++DG C G +E AG++F + GL P++ +Y MING C Sbjct: 446 MLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLC 505 Query: 181 KAKRLDEAMQLYENL 225 L EA +L+ + Sbjct: 506 LQGLLAEATKLFREM 520 Score = 59.7 bits (143), Expect = 2e-07 Identities = 27/75 (36%), Positives = 48/75 (64%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 +L ++ + PDT T+ +L+ G C++G++ EA ++FD MV G +PN V+Y T+I+G C Sbjct: 131 VLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLC 190 Query: 181 KAKRLDEAMQLYENL 225 K A++L ++ Sbjct: 191 KVGNSRAAIRLLRSM 205 Score = 59.7 bits (143), Expect = 2e-07 Identities = 25/61 (40%), Positives = 41/61 (67%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 LL M+Q+N P+ ITYN+++D ++ EA N+F M+ G+ PN+ +YN++I+G C Sbjct: 201 LLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLC 260 Query: 181 K 183 K Sbjct: 261 K 261 >ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12775, mitochondrial; Flags: Precursor gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains multiple PPR PF|01535 repeats. EST gb|AI999079 comes from this gene [Arabidopsis thaliana] gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 644 Score = 95.1 bits (235), Expect = 5e-18 Identities = 39/78 (50%), Positives = 61/78 (78%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 LL+EM+QR +AP+TITYNSL+DG C + R+EEA + DLM+ G +P+I+++N +INGYC Sbjct: 355 LLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYC 414 Query: 181 KAKRLDEAMQLYENLKCK 234 KA R+D+ ++L+ + + Sbjct: 415 KANRIDDGLELFREMSLR 432 Score = 70.1 bits (170), Expect = 2e-10 Identities = 27/73 (36%), Positives = 52/73 (71%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 LL +MI+R ++P+ +T++ L+D +G++ EA + M+ G+ PN ++YN++I+G+C Sbjct: 320 LLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFC 379 Query: 181 KAKRLDEAMQLYE 219 K RL+EA+Q+ + Sbjct: 380 KENRLEEAIQMVD 392 Score = 63.9 bits (154), Expect = 1e-08 Identities = 27/75 (36%), Positives = 48/75 (64%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 LL +M +RN+ D + Y+ ++DG C G ++ A N+F+ M G + +I++YNT+I G+C Sbjct: 250 LLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFC 309 Query: 181 KAKRLDEAMQLYENL 225 A R D+ +L ++ Sbjct: 310 NAGRWDDGAKLLRDM 324 Score = 61.6 bits (148), Expect = 6e-08 Identities = 27/76 (35%), Positives = 47/76 (61%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 L EM R V +T+TYN+L+ G C G++E A +F MV + P+IVSY +++G C Sbjct: 425 LFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLC 484 Query: 181 KAKRLDEAMQLYENLK 228 L++A++++ ++ Sbjct: 485 DNGELEKALEIFGKIE 500 Score = 60.1 bits (144), Expect = 2e-07 Identities = 28/78 (35%), Positives = 47/78 (60%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 L +EM+ R V PD ++Y L+DG C G +E+A +F + + +E +I Y +I+G C Sbjct: 460 LFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMC 519 Query: 181 KAKRLDEAMQLYENLKCK 234 A ++D+A L+ +L K Sbjct: 520 NASKVDDAWDLFCSLPLK 537 Score = 58.5 bits (140), Expect = 5e-07 Identities = 23/64 (35%), Positives = 44/64 (68%) Frame = +1 Query: 34 PDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYCKAKRLDEAMQL 213 PDT+ +N+L++G CL+ R+ EA + D MV+ G +P +++ NT++NG C ++ +A+ L Sbjct: 156 PDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVL 215 Query: 214 YENL 225 + + Sbjct: 216 IDRM 219 Score = 58.5 bits (140), Expect = 5e-07 Identities = 26/76 (34%), Positives = 47/76 (61%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 L++ M++ P IT N+L++G CL G++ +A + D MV+ G +PN V+Y ++N C Sbjct: 180 LVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMC 239 Query: 181 KAKRLDEAMQLYENLK 228 K+ + AM+L ++ Sbjct: 240 KSGQTALAMELLRKME 255 >ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 618 Score = 94.0 bits (232), Expect = 1e-17 Identities = 43/80 (53%), Positives = 57/80 (71%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 L EM+ R +APDTITY+SL+DG C + R+ EA + DLMV G EPNIV+Y+ +IN YC Sbjct: 336 LYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYC 395 Query: 181 KAKRLDEAMQLYENLKCKCL 240 KAKR+D M+L+ + K L Sbjct: 396 KAKRVDNGMRLFCEISSKGL 415 Score = 65.9 bits (159), Expect = 3e-09 Identities = 28/78 (35%), Positives = 54/78 (69%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 +L EMI RN+ P+ +T+++L+D +G++ EA +++ MV G+ P+ ++Y+++I+G+C Sbjct: 301 MLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFC 360 Query: 181 KAKRLDEAMQLYENLKCK 234 K RL EA Q+ + + K Sbjct: 361 KENRLGEANQMLDLMVSK 378 Score = 63.2 bits (152), Expect = 2e-08 Identities = 28/64 (43%), Positives = 45/64 (70%) Frame = +1 Query: 34 PDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYCKAKRLDEAMQL 213 P+TIT+++L++G CL+GR+ EA + D MV+ PN+V+ NT+ING C R+ EA+ L Sbjct: 137 PNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVL 196 Query: 214 YENL 225 + + Sbjct: 197 IDRM 200 Score = 61.2 bits (147), Expect = 8e-08 Identities = 28/78 (35%), Positives = 46/78 (58%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 L +EM+ R V P +TY L+DG C G +++A +F+ M + + I YN +I+G C Sbjct: 441 LFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMC 500 Query: 181 KAKRLDEAMQLYENLKCK 234 A ++D+A L+ +L K Sbjct: 501 NASKVDDAWSLFCSLSVK 518 Score = 60.5 bits (145), Expect = 1e-07 Identities = 23/73 (31%), Positives = 46/73 (63%) Frame = +1 Query: 10 EMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYCKAK 189 E+ + + DT+TYN+L+ G C G++ A +F MV G+ P++V+Y +++G C Sbjct: 409 EISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNG 468 Query: 190 RLDEAMQLYENLK 228 L +A++++E ++ Sbjct: 469 ELQKALEIFEKMQ 481 Score = 57.0 bits (136), Expect = 2e-06 Identities = 25/76 (32%), Positives = 46/76 (60%) Frame = +1 Query: 1 LLEEMIQRNVAPDTITYNSLMDGCCLQGRMEEAGNVFDLMVDAGLEPNIVSYNTMINGYC 180 L++ M++ P+ +T N+L++G CL+GR+ EA + D MV G E N ++Y ++N C Sbjct: 161 LVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMC 220 Query: 181 KAKRLDEAMQLYENLK 228 K+ A+ L+ ++ Sbjct: 221 KSGNTALALDLFRKME 236