BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00016424
         (253 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containi...    90   2e-16
ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containi...    85   5e-15
ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containi...    80   1e-13
ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containi...    78   6e-13
ref|XP_002528356.1| pentatricopeptide repeat-containing protein,...    75   5e-12

>ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
           [Vitis vinifera]
          Length = 590

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 49/75 (65%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
 Frame = -3

Query: 221 DLSLINNLLTSYSKSNLLSDALRLFRQ-ILSPNVVTWTALISS-TNTVFSFHHYISMLRY 48
           D S  N+L+T YSKSNLLS A+R+F   I SPNVV+WTALIS+  +T F+  H+ISMLR+
Sbjct: 46  DRSFYNSLITLYSKSNLLSKAVRIFHHHIPSPNVVSWTALISAYASTSFALLHFISMLRH 105

Query: 47  PKLPNERTLASLLKT 3
           P LPN+RTLASLLKT
Sbjct: 106 PTLPNQRTLASLLKT 120


>ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
           gi|449487598|ref|XP_004157706.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 583

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 42/69 (60%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
 Frame = -3

Query: 206 NNLLTSYSKSNLLSDALRLFRQILSPNVVTWTALISS-TNTVFSFHHYISMLRYPKLPNE 30
           NNL+T YSK+NLL  + RLF QI  P++V+WTALIS+ ++T  S  H++SMLRYP  PNE
Sbjct: 48  NNLITRYSKANLLHYSARLFNQIPFPDIVSWTALISAHSSTFLSLRHFVSMLRYPTFPNE 107

Query: 29  RTLASLLKT 3
           RTLA L KT
Sbjct: 108 RTLAPLFKT 116


>ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 43/76 (56%), Positives = 57/76 (75%), Gaps = 2/76 (2%)
 Frame = -3

Query: 224 KDLSLINNLLTSYSKSNLLSDALRLFRQI-LSPNVVTWTALISS-TNTVFSFHHYISMLR 51
           KD ++ NNL+T YSKSNL S A+ LF ++   PNVV+WTALIS+ +NT+ S  H+++MLR
Sbjct: 32  KDRAVWNNLITHYSKSNLSSYAVSLFHRLPFPPNVVSWTALISAHSNTLLSLRHFLAMLR 91

Query: 50  YPKLPNERTLASLLKT 3
           +  LPN RTLASL  T
Sbjct: 92  HNTLPNHRTLASLFAT 107


>ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score = 78.2 bits (191), Expect = 6e-13
 Identities = 41/77 (53%), Positives = 59/77 (76%), Gaps = 2/77 (2%)
 Frame = -3

Query: 227 MKDLSLINNLLTSYSKSNLLSDALRLFRQI-LSPNVVTWTALISS-TNTVFSFHHYISML 54
           +KD ++ NNL+T YSKS+L S A+ LF+++   PNVV+WTALIS+ +NT+ S  H+++ML
Sbjct: 31  IKDRAVWNNLITHYSKSDLSSYAVSLFQRLPFPPNVVSWTALISAHSNTLLSLRHFLAML 90

Query: 53  RYPKLPNERTLASLLKT 3
           R+  LPN RT+ASL  T
Sbjct: 91  RHNTLPNHRTVASLFTT 107


>ref|XP_002528356.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532224|gb|EEF34028.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 356

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 4/76 (5%)
 Frame = -3

Query: 221 DLSLINNLLTSYSKSN---LLSDALRLFRQILSPNVVTWTALISS-TNTVFSFHHYISML 54
           +LS  N+L+T YS+S    + S A RLF  + SPN+V+WT+LIS+ T++  S HH++SML
Sbjct: 25  NLSCFNHLITLYSRSPNFLVFSYANRLFSLLPSPNIVSWTSLISAHTHSFLSLHHFLSML 84

Query: 53  RYPKLPNERTLASLLK 6
           R P LPN+RTLASL K
Sbjct: 85  RRPILPNQRTLASLFK 100