BLASTX nr result

ID: Coptis25_contig00016396 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00016396
         (780 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324348.1| predicted protein [Populus trichocarpa] gi|2...    87   6e-27
ref|XP_002308717.1| f-box family protein [Populus trichocarpa] g...    79   4e-26
emb|CBI38325.3| unnamed protein product [Vitis vinifera]               85   5e-25
ref|XP_002270412.1| PREDICTED: F-box protein PP2-B1-like [Vitis ...    85   5e-25
ref|XP_002513764.1| conserved hypothetical protein [Ricinus comm...    93   4e-24

>ref|XP_002324348.1| predicted protein [Populus trichocarpa] gi|222865782|gb|EEF02913.1|
           predicted protein [Populus trichocarpa]
          Length = 304

 Score = 86.7 bits (213), Expect(3) = 6e-27
 Identities = 37/65 (56%), Positives = 47/65 (72%)
 Frame = +2

Query: 218 LDKMSGKKCFMIGEKELKITWSDTPQYWKWIPLPDSRFAEAAELINVCWLHIKVEIDTQI 397
           L+K SGKKC+M+  ++L I W DTP YWKW   P SRF E AELI+VCWL I+ +I+  +
Sbjct: 104 LEKKSGKKCYMLSARDLIIVWGDTPTYWKWNSDPSSRFGEVAELISVCWLEIRGKINATM 163

Query: 398 LSPTT 412
           LSP T
Sbjct: 164 LSPAT 168



 Score = 50.4 bits (119), Expect(3) = 6e-27
 Identities = 21/43 (48%), Positives = 30/43 (69%)
 Frame = +1

Query: 619 PALSSATRYEGQFPSERRDGWLEIELGDFYNEQGEDGVVEIEL 747
           PA   A    GQ+P +R DGWLEIELG+F+ ++GED  +E+ +
Sbjct: 237 PASEPARENNGQYPKKREDGWLEIELGEFFCKEGEDRELEMSV 279



 Score = 30.4 bits (67), Expect(3) = 6e-27
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = +3

Query: 420 YEAYLVIKFSDQACGLEDPPAEISVKFLGGGGSASGERTVFLDPE 554
           Y AYLV + +    GL+  P E+ V   G  GS  G R V+LD E
Sbjct: 170 YTAYLVFRPTRGLYGLDYQPVEVGV---GLVGSECGMRNVYLDSE 211


>ref|XP_002308717.1| f-box family protein [Populus trichocarpa]
           gi|222854693|gb|EEE92240.1| f-box family protein
           [Populus trichocarpa]
          Length = 292

 Score = 79.0 bits (193), Expect(3) = 4e-26
 Identities = 35/65 (53%), Positives = 43/65 (66%)
 Frame = +2

Query: 218 LDKMSGKKCFMIGEKELKITWSDTPQYWKWIPLPDSRFAEAAELINVCWLHIKVEIDTQI 397
           L K SGKKC+M+  ++L I W DTP YW+W     SRF E AELI VCWL I  +I+  +
Sbjct: 93  LVKKSGKKCYMLSARDLMIVWGDTPTYWRWNSDSSSRFGEVAELIGVCWLEICGKINATM 152

Query: 398 LSPTT 412
           LSP T
Sbjct: 153 LSPAT 157



 Score = 50.4 bits (119), Expect(3) = 4e-26
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = +1

Query: 634 ATRYEGQFPSERRDGWLEIELGDFYNEQGEDGVVEIEL 747
           A+   GQ P ER DGWLEIELG+F+ ++GEDG +E+ +
Sbjct: 231 ASENNGQHPKERGDGWLEIELGEFFCKEGEDGELEMRV 268



 Score = 35.4 bits (80), Expect(3) = 4e-26
 Identities = 20/45 (44%), Positives = 27/45 (60%)
 Frame = +3

Query: 420 YEAYLVIKFSDQACGLEDPPAEISVKFLGGGGSASGERTVFLDPE 554
           Y AYLV K  + A GL+  P E+ V   G  GS +G+R V+LD +
Sbjct: 159 YAAYLVFKPKEGAYGLDYQPVEVGV---GLVGSENGKRNVYLDSQ 200


>emb|CBI38325.3| unnamed protein product [Vitis vinifera]
          Length = 312

 Score = 85.1 bits (209), Expect(3) = 5e-25
 Identities = 36/61 (59%), Positives = 44/61 (72%)
 Frame = +2

Query: 218 LDKMSGKKCFMIGEKELKITWSDTPQYWKWIPLPDSRFAEAAELINVCWLHIKVEIDTQI 397
           ++K SGKKC+MI  + L I W DTP YWKWI LP SRF E AELI+VCW  I+  I+T +
Sbjct: 133 IEKRSGKKCYMIAARALTIEWGDTPMYWKWISLPQSRFKEVAELISVCWFEIRGRINTCL 192

Query: 398 L 400
           L
Sbjct: 193 L 193



 Score = 44.7 bits (104), Expect(3) = 5e-25
 Identities = 19/39 (48%), Positives = 29/39 (74%), Gaps = 4/39 (10%)
 Frame = +1

Query: 652 QFPSERRDGWLEIELGDFYNEQGED----GVVEIELGDF 756
           Q P +R DGWLEIELG+F+NE G++     V+E++ G++
Sbjct: 257 QHPKKREDGWLEIELGEFFNEGGDEELEMSVLEVKAGNW 295



 Score = 31.2 bits (69), Expect(3) = 5e-25
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 417 SYEAYLVIKFSDQACGLEDPPAEISVKFLGGGGSASGERTVFLDP 551
           +Y AYLV   + +  G E  P E+S+  +GG  S    ++V+L+P
Sbjct: 198 NYAAYLVFNSTTETYGFEYHPVEVSIGIIGGRIST---QSVYLNP 239


>ref|XP_002270412.1| PREDICTED: F-box protein PP2-B1-like [Vitis vinifera]
          Length = 299

 Score = 85.1 bits (209), Expect(3) = 5e-25
 Identities = 36/61 (59%), Positives = 44/61 (72%)
 Frame = +2

Query: 218 LDKMSGKKCFMIGEKELKITWSDTPQYWKWIPLPDSRFAEAAELINVCWLHIKVEIDTQI 397
           ++K SGKKC+MI  + L I W DTP YWKWI LP SRF E AELI+VCW  I+  I+T +
Sbjct: 99  IEKRSGKKCYMIAARALTIEWGDTPMYWKWISLPQSRFKEVAELISVCWFEIRGRINTCL 158

Query: 398 L 400
           L
Sbjct: 159 L 159



 Score = 44.7 bits (104), Expect(3) = 5e-25
 Identities = 19/39 (48%), Positives = 29/39 (74%), Gaps = 4/39 (10%)
 Frame = +1

Query: 652 QFPSERRDGWLEIELGDFYNEQGED----GVVEIELGDF 756
           Q P +R DGWLEIELG+F+NE G++     V+E++ G++
Sbjct: 244 QHPKKREDGWLEIELGEFFNEGGDEELEMSVLEVKAGNW 282



 Score = 31.2 bits (69), Expect(3) = 5e-25
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 417 SYEAYLVIKFSDQACGLEDPPAEISVKFLGGGGSASGERTVFLDP 551
           +Y AYLV   + +  G E  P E+S+  +GG  S    ++V+L+P
Sbjct: 164 NYAAYLVFNSTTETYGFEYHPVEVSIGIIGGRIST---QSVYLNP 205


>ref|XP_002513764.1| conserved hypothetical protein [Ricinus communis]
           gi|223546850|gb|EEF48347.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 301

 Score = 92.8 bits (229), Expect(2) = 4e-24
 Identities = 39/65 (60%), Positives = 49/65 (75%)
 Frame = +2

Query: 218 LDKMSGKKCFMIGEKELKITWSDTPQYWKWIPLPDSRFAEAAELINVCWLHIKVEIDTQI 397
           LDK +GKKC+M+  ++LKI+W  TP YW+WI  PDSRF E AELI+VCWL I   I T +
Sbjct: 98  LDKRNGKKCYMLSARDLKISWGGTPTYWRWISDPDSRFGEVAELISVCWLEISGTISTSL 157

Query: 398 LSPTT 412
           LSP+T
Sbjct: 158 LSPST 162



 Score = 45.1 bits (105), Expect(2) = 4e-24
 Identities = 22/49 (44%), Positives = 30/49 (61%)
 Frame = +3

Query: 420 YEAYLVIKFSDQACGLEDPPAEISVKFLGGGGSASGERTVFLDPECNCR 566
           Y AYLV K +++A GL DPP E  V+   G GS   +R ++LD + N R
Sbjct: 164 YSAYLVFKLNERAYGLHDPPVEAIVR--AGDGSEINKRIIYLDADTNLR 210


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