BLASTX nr result
ID: Coptis25_contig00016396
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00016396
(780 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002324348.1| predicted protein [Populus trichocarpa] gi|2... 87 6e-27
ref|XP_002308717.1| f-box family protein [Populus trichocarpa] g... 79 4e-26
emb|CBI38325.3| unnamed protein product [Vitis vinifera] 85 5e-25
ref|XP_002270412.1| PREDICTED: F-box protein PP2-B1-like [Vitis ... 85 5e-25
ref|XP_002513764.1| conserved hypothetical protein [Ricinus comm... 93 4e-24
>ref|XP_002324348.1| predicted protein [Populus trichocarpa] gi|222865782|gb|EEF02913.1|
predicted protein [Populus trichocarpa]
Length = 304
Score = 86.7 bits (213), Expect(3) = 6e-27
Identities = 37/65 (56%), Positives = 47/65 (72%)
Frame = +2
Query: 218 LDKMSGKKCFMIGEKELKITWSDTPQYWKWIPLPDSRFAEAAELINVCWLHIKVEIDTQI 397
L+K SGKKC+M+ ++L I W DTP YWKW P SRF E AELI+VCWL I+ +I+ +
Sbjct: 104 LEKKSGKKCYMLSARDLIIVWGDTPTYWKWNSDPSSRFGEVAELISVCWLEIRGKINATM 163
Query: 398 LSPTT 412
LSP T
Sbjct: 164 LSPAT 168
Score = 50.4 bits (119), Expect(3) = 6e-27
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = +1
Query: 619 PALSSATRYEGQFPSERRDGWLEIELGDFYNEQGEDGVVEIEL 747
PA A GQ+P +R DGWLEIELG+F+ ++GED +E+ +
Sbjct: 237 PASEPARENNGQYPKKREDGWLEIELGEFFCKEGEDRELEMSV 279
Score = 30.4 bits (67), Expect(3) = 6e-27
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +3
Query: 420 YEAYLVIKFSDQACGLEDPPAEISVKFLGGGGSASGERTVFLDPE 554
Y AYLV + + GL+ P E+ V G GS G R V+LD E
Sbjct: 170 YTAYLVFRPTRGLYGLDYQPVEVGV---GLVGSECGMRNVYLDSE 211
>ref|XP_002308717.1| f-box family protein [Populus trichocarpa]
gi|222854693|gb|EEE92240.1| f-box family protein
[Populus trichocarpa]
Length = 292
Score = 79.0 bits (193), Expect(3) = 4e-26
Identities = 35/65 (53%), Positives = 43/65 (66%)
Frame = +2
Query: 218 LDKMSGKKCFMIGEKELKITWSDTPQYWKWIPLPDSRFAEAAELINVCWLHIKVEIDTQI 397
L K SGKKC+M+ ++L I W DTP YW+W SRF E AELI VCWL I +I+ +
Sbjct: 93 LVKKSGKKCYMLSARDLMIVWGDTPTYWRWNSDSSSRFGEVAELIGVCWLEICGKINATM 152
Query: 398 LSPTT 412
LSP T
Sbjct: 153 LSPAT 157
Score = 50.4 bits (119), Expect(3) = 4e-26
Identities = 21/38 (55%), Positives = 29/38 (76%)
Frame = +1
Query: 634 ATRYEGQFPSERRDGWLEIELGDFYNEQGEDGVVEIEL 747
A+ GQ P ER DGWLEIELG+F+ ++GEDG +E+ +
Sbjct: 231 ASENNGQHPKERGDGWLEIELGEFFCKEGEDGELEMRV 268
Score = 35.4 bits (80), Expect(3) = 4e-26
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = +3
Query: 420 YEAYLVIKFSDQACGLEDPPAEISVKFLGGGGSASGERTVFLDPE 554
Y AYLV K + A GL+ P E+ V G GS +G+R V+LD +
Sbjct: 159 YAAYLVFKPKEGAYGLDYQPVEVGV---GLVGSENGKRNVYLDSQ 200
>emb|CBI38325.3| unnamed protein product [Vitis vinifera]
Length = 312
Score = 85.1 bits (209), Expect(3) = 5e-25
Identities = 36/61 (59%), Positives = 44/61 (72%)
Frame = +2
Query: 218 LDKMSGKKCFMIGEKELKITWSDTPQYWKWIPLPDSRFAEAAELINVCWLHIKVEIDTQI 397
++K SGKKC+MI + L I W DTP YWKWI LP SRF E AELI+VCW I+ I+T +
Sbjct: 133 IEKRSGKKCYMIAARALTIEWGDTPMYWKWISLPQSRFKEVAELISVCWFEIRGRINTCL 192
Query: 398 L 400
L
Sbjct: 193 L 193
Score = 44.7 bits (104), Expect(3) = 5e-25
Identities = 19/39 (48%), Positives = 29/39 (74%), Gaps = 4/39 (10%)
Frame = +1
Query: 652 QFPSERRDGWLEIELGDFYNEQGED----GVVEIELGDF 756
Q P +R DGWLEIELG+F+NE G++ V+E++ G++
Sbjct: 257 QHPKKREDGWLEIELGEFFNEGGDEELEMSVLEVKAGNW 295
Score = 31.2 bits (69), Expect(3) = 5e-25
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 417 SYEAYLVIKFSDQACGLEDPPAEISVKFLGGGGSASGERTVFLDP 551
+Y AYLV + + G E P E+S+ +GG S ++V+L+P
Sbjct: 198 NYAAYLVFNSTTETYGFEYHPVEVSIGIIGGRIST---QSVYLNP 239
>ref|XP_002270412.1| PREDICTED: F-box protein PP2-B1-like [Vitis vinifera]
Length = 299
Score = 85.1 bits (209), Expect(3) = 5e-25
Identities = 36/61 (59%), Positives = 44/61 (72%)
Frame = +2
Query: 218 LDKMSGKKCFMIGEKELKITWSDTPQYWKWIPLPDSRFAEAAELINVCWLHIKVEIDTQI 397
++K SGKKC+MI + L I W DTP YWKWI LP SRF E AELI+VCW I+ I+T +
Sbjct: 99 IEKRSGKKCYMIAARALTIEWGDTPMYWKWISLPQSRFKEVAELISVCWFEIRGRINTCL 158
Query: 398 L 400
L
Sbjct: 159 L 159
Score = 44.7 bits (104), Expect(3) = 5e-25
Identities = 19/39 (48%), Positives = 29/39 (74%), Gaps = 4/39 (10%)
Frame = +1
Query: 652 QFPSERRDGWLEIELGDFYNEQGED----GVVEIELGDF 756
Q P +R DGWLEIELG+F+NE G++ V+E++ G++
Sbjct: 244 QHPKKREDGWLEIELGEFFNEGGDEELEMSVLEVKAGNW 282
Score = 31.2 bits (69), Expect(3) = 5e-25
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 417 SYEAYLVIKFSDQACGLEDPPAEISVKFLGGGGSASGERTVFLDP 551
+Y AYLV + + G E P E+S+ +GG S ++V+L+P
Sbjct: 164 NYAAYLVFNSTTETYGFEYHPVEVSIGIIGGRIST---QSVYLNP 205
>ref|XP_002513764.1| conserved hypothetical protein [Ricinus communis]
gi|223546850|gb|EEF48347.1| conserved hypothetical
protein [Ricinus communis]
Length = 301
Score = 92.8 bits (229), Expect(2) = 4e-24
Identities = 39/65 (60%), Positives = 49/65 (75%)
Frame = +2
Query: 218 LDKMSGKKCFMIGEKELKITWSDTPQYWKWIPLPDSRFAEAAELINVCWLHIKVEIDTQI 397
LDK +GKKC+M+ ++LKI+W TP YW+WI PDSRF E AELI+VCWL I I T +
Sbjct: 98 LDKRNGKKCYMLSARDLKISWGGTPTYWRWISDPDSRFGEVAELISVCWLEISGTISTSL 157
Query: 398 LSPTT 412
LSP+T
Sbjct: 158 LSPST 162
Score = 45.1 bits (105), Expect(2) = 4e-24
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +3
Query: 420 YEAYLVIKFSDQACGLEDPPAEISVKFLGGGGSASGERTVFLDPECNCR 566
Y AYLV K +++A GL DPP E V+ G GS +R ++LD + N R
Sbjct: 164 YSAYLVFKLNERAYGLHDPPVEAIVR--AGDGSEINKRIIYLDADTNLR 210