BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00016343
         (910 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI20809.3| unnamed protein product [Vitis vinifera]              375   e-101
ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis v...   373   e-101
ref|XP_003545557.1| PREDICTED: DNA topoisomerase 1-like [Glycine...   366   5e-99
ref|NP_194849.3| DNA topoisomerase, type IA, core [Arabidopsis t...   366   5e-99
ref|XP_002869340.1| DNA topoisomerase family protein [Arabidopsi...   364   1e-98

>emb|CBI20809.3| unnamed protein product [Vitis vinifera]
          Length = 1035

 Score =  375 bits (962), Expect = e-101
 Identities = 182/261 (69%), Positives = 211/261 (80%)
 Frame = +2

Query: 2    TDYSFTADMETELDNVSAGMTEWKGLLKDYWTRFSTYCAQAGNVDIRQVEKMLEEKFGDF 181
            TDYSFTADMETELDNVSAG+TEWKGLLKDYWTRFS YC +  NV I QVEKMLE+KFGDF
Sbjct: 757  TDYSFTADMETELDNVSAGLTEWKGLLKDYWTRFSMYCNRVSNVHIHQVEKMLEKKFGDF 816

Query: 182  LFASLPNKSRTCPSCLTGTLTFKVSRFGAGYFIGCDEHPKCKYIAKTLYGEEEEDEDPKK 361
            LF+ LP+KSRTCPSC+ GTL FKVSRFG+GYFIGCD+HPKCKYIAK L G+++E E   +
Sbjct: 817  LFSFLPDKSRTCPSCMEGTLIFKVSRFGSGYFIGCDQHPKCKYIAKMLDGDDDE-EVASQ 875

Query: 362  MNIVSEPKLLGLHPSSNEKILLKNGPYGCYIQLGDDRKGYSPKRASVGQVKNVDSITLEQ 541
                 EPK LGL P S+EKILLKNGPYG Y+QLG+DRKGY PKRASV  +K+V SITLE 
Sbjct: 876  DKTFEEPKALGLSPGSSEKILLKNGPYGFYLQLGEDRKGYLPKRASVSHIKDVGSITLED 935

Query: 542  ALDWLQYPVLLGNHLEDGGPVYLKISKFGFTIRHKRTIAPVPKNLDPKKITMEKAMKILL 721
            AL+ L+YPV LGNH  D  PV LK++K GF+IRH+RTIAPVPKN+ P  IT+EKA+K+LL
Sbjct: 936  ALELLRYPVTLGNHPNDDHPVVLKLAKNGFSIRHRRTIAPVPKNIKPNDITLEKALKLLL 995

Query: 722  SKHAKRCGRPPSKPKDTLDAI 784
             K  K+ GRP +K K  L  I
Sbjct: 996  GKDVKQSGRPKNKKKQELHII 1016


>ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 1185

 Score =  373 bits (957), Expect = e-101
 Identities = 180/255 (70%), Positives = 209/255 (81%)
 Frame = +2

Query: 2    TDYSFTADMETELDNVSAGMTEWKGLLKDYWTRFSTYCAQAGNVDIRQVEKMLEEKFGDF 181
            TDYSFTADMETELDNVSAG+TEWKGLLKDYWTRFS YC +  NV I QVEKMLE+KFGDF
Sbjct: 925  TDYSFTADMETELDNVSAGLTEWKGLLKDYWTRFSMYCNRVSNVHIHQVEKMLEKKFGDF 984

Query: 182  LFASLPNKSRTCPSCLTGTLTFKVSRFGAGYFIGCDEHPKCKYIAKTLYGEEEEDEDPKK 361
            LF+ LP+KSRTCPSC+ GTL FKVSRFG+GYFIGCD+HPKCKYIAK L G+++E E   +
Sbjct: 985  LFSFLPDKSRTCPSCMEGTLIFKVSRFGSGYFIGCDQHPKCKYIAKMLDGDDDE-EVASQ 1043

Query: 362  MNIVSEPKLLGLHPSSNEKILLKNGPYGCYIQLGDDRKGYSPKRASVGQVKNVDSITLEQ 541
                 EPK LGL P S+EKILLKNGPYG Y+QLG+DRKGY PKRASV  +K+V SITLE 
Sbjct: 1044 DKTFEEPKALGLSPGSSEKILLKNGPYGFYLQLGEDRKGYLPKRASVSHIKDVGSITLED 1103

Query: 542  ALDWLQYPVLLGNHLEDGGPVYLKISKFGFTIRHKRTIAPVPKNLDPKKITMEKAMKILL 721
            AL+ L+YPV LGNH  D  PV LK++K GF+IRH+RTIAPVPKN+ P  IT+EKA+K+LL
Sbjct: 1104 ALELLRYPVTLGNHPNDDHPVVLKLAKNGFSIRHRRTIAPVPKNIKPNDITLEKALKLLL 1163

Query: 722  SKHAKRCGRPPSKPK 766
             K  K+ GRP +K K
Sbjct: 1164 GKDVKQSGRPKNKKK 1178


>ref|XP_003545557.1| PREDICTED: DNA topoisomerase 1-like [Glycine max]
          Length = 1197

 Score =  366 bits (939), Expect = 5e-99
 Identities = 167/250 (66%), Positives = 207/250 (82%)
 Frame = +2

Query: 2    TDYSFTADMETELDNVSAGMTEWKGLLKDYWTRFSTYCAQAGNVDIRQVEKMLEEKFGDF 181
            TDYSFTADMETELDNVSAG+TEWKGLL+DYWTRF +YC +  NV I QVEKMLE+KFGD+
Sbjct: 933  TDYSFTADMETELDNVSAGLTEWKGLLRDYWTRFKSYCERTSNVHIHQVEKMLEKKFGDY 992

Query: 182  LFASLPNKSRTCPSCLTGTLTFKVSRFGAGYFIGCDEHPKCKYIAKTLYGEEEEDEDPKK 361
            LFASLP++SR CPSC+ GTL FKVSRFGAGYFIGCD+HP+CKYIAKTLYG EEE++  + 
Sbjct: 993  LFASLPDQSRVCPSCMEGTLIFKVSRFGAGYFIGCDQHPRCKYIAKTLYGTEEEEDASQP 1052

Query: 362  MNIVSEPKLLGLHPSSNEKILLKNGPYGCYIQLGDDRKGYSPKRASVGQVKNVDSITLEQ 541
               + EPKLLG+   SNEK+LLK+GPYG Y+QLG+DRKGY P+RASV  +K+VDSITL+ 
Sbjct: 1053 NTRIEEPKLLGVTSGSNEKVLLKSGPYGVYVQLGEDRKGYIPRRASVSHIKDVDSITLKD 1112

Query: 542  ALDWLQYPVLLGNHLEDGGPVYLKISKFGFTIRHKRTIAPVPKNLDPKKITMEKAMKILL 721
            AL+ LQYP+ LGNH +DG PV L++++ GF +RH+RTIA +PKN+ P  +T+EKA++ L 
Sbjct: 1113 ALEVLQYPLTLGNHPKDGQPVILRLARAGFCVRHRRTIASIPKNVKPSDVTLEKALEYLS 1172

Query: 722  SKHAKRCGRP 751
                +R GRP
Sbjct: 1173 GDDVRRSGRP 1182


>ref|NP_194849.3| DNA topoisomerase, type IA, core [Arabidopsis thaliana]
            gi|332660478|gb|AEE85878.1| DNA topoisomerase, type IA,
            core [Arabidopsis thaliana]
          Length = 1284

 Score =  366 bits (939), Expect = 5e-99
 Identities = 165/251 (65%), Positives = 210/251 (83%)
 Frame = +2

Query: 2    TDYSFTADMETELDNVSAGMTEWKGLLKDYWTRFSTYCAQAGNVDIRQVEKMLEEKFGDF 181
            TDYSFTADMETELDNVS G+TEWKGLL+DYWTRFS YC +  NV   QVEKMLE+K+ D 
Sbjct: 1016 TDYSFTADMETELDNVSGGVTEWKGLLRDYWTRFSAYCKRVENVQRSQVEKMLEKKYEDV 1075

Query: 182  LFASLPNKSRTCPSCLTGTLTFKVSRFGAGYFIGCDEHPKCKYIAKTLYGEEEEDEDPKK 361
            LF+ LP  SRTCPSC+ GTL+FK S+FGAGYFIGCD+HP CK+IAKTLYGE+E+++DP K
Sbjct: 1076 LFSLLPYPSRTCPSCMEGTLSFKASKFGAGYFIGCDQHPSCKFIAKTLYGEDEDEDDPPK 1135

Query: 362  MNIVSEPKLLGLHPSSNEKILLKNGPYGCYIQLGDDRKGYSPKRASVGQVKNVDSITLEQ 541
             N V EPKLLGLHP+++EK++LK GPYG Y+QLG+D+KG++PKRA+   +K+V+SITLE 
Sbjct: 1136 NNCVEEPKLLGLHPNTSEKVILKCGPYGHYVQLGEDKKGHTPKRANAAHIKDVNSITLES 1195

Query: 542  ALDWLQYPVLLGNHLEDGGPVYLKISKFGFTIRHKRTIAPVPKNLDPKKITMEKAMKILL 721
            AL+ L+YP+ LG H EDG PV LK+SK GFTI+H+R +A VPKN +P ++T+E+AMK+L 
Sbjct: 1196 ALELLRYPLTLGTHPEDGQPVVLKLSKSGFTIKHRRNMATVPKNTEPGEVTLERAMKLLS 1255

Query: 722  SKHAKRCGRPP 754
             K+ ++ GRPP
Sbjct: 1256 GKNVRKSGRPP 1266


>ref|XP_002869340.1| DNA topoisomerase family protein [Arabidopsis lyrata subsp. lyrata]
            gi|297315176|gb|EFH45599.1| DNA topoisomerase family
            protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1325

 Score =  364 bits (935), Expect = 1e-98
 Identities = 164/251 (65%), Positives = 211/251 (84%)
 Frame = +2

Query: 2    TDYSFTADMETELDNVSAGMTEWKGLLKDYWTRFSTYCAQAGNVDIRQVEKMLEEKFGDF 181
            TDYSFTADME ELDNVS G+TEWKGLL+DYWTRFS YC +  NV  +QVEKMLE+K+ DF
Sbjct: 1057 TDYSFTADMEVELDNVSGGVTEWKGLLRDYWTRFSAYCKRVENVQRQQVEKMLEKKYEDF 1116

Query: 182  LFASLPNKSRTCPSCLTGTLTFKVSRFGAGYFIGCDEHPKCKYIAKTLYGEEEEDEDPKK 361
            LF+SLP  SRTCPSC+ GTL+FK S++GAGYFIGCD+HP CK+IAKT+YGE+E+++DP K
Sbjct: 1117 LFSSLPYPSRTCPSCMEGTLSFKASKYGAGYFIGCDQHPSCKFIAKTIYGEDEDEDDPPK 1176

Query: 362  MNIVSEPKLLGLHPSSNEKILLKNGPYGCYIQLGDDRKGYSPKRASVGQVKNVDSITLEQ 541
               V EPKLLGLHP+++EK++LK GPYG Y+QLG+D+KG++PKRA+   +K+V+SITLE 
Sbjct: 1177 NTCVEEPKLLGLHPNTSEKVILKCGPYGHYVQLGEDKKGHTPKRANAAHIKDVNSITLES 1236

Query: 542  ALDWLQYPVLLGNHLEDGGPVYLKISKFGFTIRHKRTIAPVPKNLDPKKITMEKAMKILL 721
            AL+ L+YP+ LGNH  DG PV L++SK GFTI+H+ T+A VPKN +P ++T+EKAMK+L 
Sbjct: 1237 ALELLRYPLTLGNHPIDGQPVVLRLSKSGFTIKHRCTMATVPKNTEPGEVTLEKAMKLLS 1296

Query: 722  SKHAKRCGRPP 754
             K+A+  GRPP
Sbjct: 1297 GKNARHSGRPP 1307