BLASTX nr result

ID: Coptis25_contig00016300 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00016300
         (910 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula] g...    61   4e-07
gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    54   7e-06

>ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula]
           gi|355506707|gb|AES87849.1| GDSL esterase/lipase
           [Medicago truncatula]
          Length = 1004

 Score = 60.8 bits (146), Expect = 4e-07
 Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
 Frame = -2

Query: 729 VFLTEGAFKLS-FWKNVGVGSNYRAKSLAIIEGVELALKKGWKKIWIETDSVLTARAFTS 553
           VF  + A  LS F KN+G GS Y+ +  AI+  VE+A ++ W+ IWIE+DS L   AF  
Sbjct: 251 VFRDQNANFLSCFAKNLGGGSAYQPELAAIMRVVEIAYQRNWRNIWIESDSALVVMAFKK 310

Query: 552 KQML-WDLKARLLNCLKEL--QDVRITSVWREAN 460
             M+   L+ R +NC K L   +  IT ++RE N
Sbjct: 311 MSMIPCRLRNRWINCRKLLCRMNFVITHIYREDN 344


>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 53.5 bits (127), Expect(2) = 7e-06
 Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
 Frame = -2

Query: 696 FWKNVGVGSNYRAKSLAIIEGVELALKKGWKKIWIETDSVLTARAFTSKQML-WDLKARL 520
           F +N+G  + ++A+  A I  +E +++   + IW+ETDS L  +AF+S + + W L+ R 
Sbjct: 43  FAQNIGHATCFKAELCAAIFAIEKSIEYNLRDIWLETDSKLVVKAFSSSEHVPWQLRTRW 102

Query: 519 LNCLKELQDVR--ITSVWREANITARGC--TGKSW*LFT 415
            NCL   Q ++   T + RE N  A      GKS  L T
Sbjct: 103 NNCLALAQKIKCVCTHIHREGNAGADSLAKNGKSLALLT 141



 Score = 23.1 bits (48), Expect(2) = 7e-06
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 788 VKLNTDGSSRGNPGMSGIGTCF 723
           VK+N DGS+ G P     G  F
Sbjct: 11  VKINLDGSAFGAPSCGATGGVF 32


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