BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00016257
         (835 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]    64   1e-12
gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis tha...    78   2e-12
emb|CAB46043.1| retrotransposon like protein [Arabidopsis thalia...    74   5e-11
gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thal...    69   1e-09
dbj|BAK41512.1| C-end truncated polyprotein [Arabidopsis thaliana]     69   1e-09

>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
          Length = 1171

 Score = 64.3 bits (155), Expect(2) = 1e-12
 Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 5/167 (2%)
 Frame = +2

Query: 8    IFSQYSKHSKQI*KIF---IESKSFDRVGEYASTRLNNFLHAQGI*VRYSCPYS*AKWSS 178
            +F+ + K      K+F   I+    D  GE+ S +   FL AQGI  R +CP++ ++ + 
Sbjct: 560  VFATFVKFKTIAEKLFSTSIKQIQTDNGGEFTSNQFKQFLTAQGIFHRLTCPHT-SQQNG 618

Query: 179  *KET*TQY*NGLGILLHIAMWLHNSG--SMFSKPVYI**TGHQQNPSYQSPLQKLLKLSP 352
              E   ++   +G+ L     L        F   V++      +     +P   L K  P
Sbjct: 619  IVERKHRHIQEMGLTLLAQSSLSPQYWVDAFLTSVFLINRLPTKVLDNLTPYFLLHKTEP 678

Query: 353  NYAYLRVYGCYCFPWIRSYTTKKLQAQIKECIFIGYSPVQFLNPCLD 493
             Y  LRV+GC C+P +R Y   KL  + K+CIF+GYS  Q    CLD
Sbjct: 679  TYMDLRVFGCACYPLLRPYNDHKLTFRSKKCIFLGYSNCQKGYRCLD 725



 Score = 35.0 bits (79), Expect(2) = 1e-12
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +3

Query: 498 TNRIYVSRHVIFNEKSFPFK 557
           T R+Y+SRHVIF+E SFP K
Sbjct: 728 TKRVYISRHVIFDEHSFPAK 747


>gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis thaliana]
           gi|225898008|dbj|BAH30336.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 1459

 Score = 78.2 bits (191), Expect = 2e-12
 Identities = 34/59 (57%), Positives = 40/59 (67%)
 Frame = +2

Query: 317 QSPLQKLLKLSPNYAYLRVYGCYCFPWIRSYTTKKLQAQIKECIFIGYSPVQFLNPCLD 493
           QSP QKL   SPNY  LRV+GC CFPW+R YT  KL+ + K C+F+GYS  Q    CLD
Sbjct: 678 QSPFQKLFGSSPNYQRLRVFGCLCFPWLRPYTRNKLEERSKRCVFLGYSLTQTAYLCLD 736


>emb|CAB46043.1| retrotransposon like protein [Arabidopsis thaliana]
           gi|7268438|emb|CAB80958.1| retrotransposon like protein
           [Arabidopsis thaliana]
          Length = 1474

 Score = 73.6 bits (179), Expect = 5e-11
 Identities = 31/61 (50%), Positives = 39/61 (63%)
 Frame = +2

Query: 311 SYQSPLQKLLKLSPNYAYLRVYGCYCFPWIRSYTTKKLQAQIKECIFIGYSPVQFLNPCL 490
           S +SP QKL    PNY  LRV+GC CFPW+R YT  KL+ + + C+F+GYS  Q    C 
Sbjct: 671 SMESPFQKLFGSKPNYERLRVFGCLCFPWLRPYTHNKLEERSRRCVFLGYSLTQTAYLCF 730

Query: 491 D 493
           D
Sbjct: 731 D 731


>gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thaliana]
           gi|18265373|dbj|BAB84015.1| polyprotein [Arabidopsis
           thaliana]
          Length = 1466

 Score = 69.3 bits (168), Expect = 1e-09
 Identities = 29/58 (50%), Positives = 38/58 (65%)
 Frame = +2

Query: 317 QSPLQKLLKLSPNYAYLRVYGCYCFPWIRSYTTKKLQAQIKECIFIGYSPVQFLNPCL 490
           +SP QKL   SPNY  LRV+GC C+PW+R Y   KL  + ++C+F+GYS  Q    CL
Sbjct: 672 ESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCL 729


>dbj|BAK41512.1| C-end truncated polyprotein [Arabidopsis thaliana]
          Length = 1048

 Score = 69.3 bits (168), Expect = 1e-09
 Identities = 29/58 (50%), Positives = 38/58 (65%)
 Frame = +2

Query: 317 QSPLQKLLKLSPNYAYLRVYGCYCFPWIRSYTTKKLQAQIKECIFIGYSPVQFLNPCL 490
           +SP QKL   SPNY  LRV+GC C+PW+R Y   KL  + ++C+F+GYS  Q    CL
Sbjct: 667 ESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCL 724