BLASTX nr result
ID: Coptis25_contig00016247
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00016247
(1517 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris] 410 e-112
emb|CAN76580.1| hypothetical protein VITISV_025642 [Vitis vinifera] 371 e-100
gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi] 316 1e-83
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera] 308 2e-81
emb|CAN66576.1| hypothetical protein VITISV_016964 [Vitis vinifera] 305 2e-80
>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1290
Score = 410 bits (1053), Expect = e-112
Identities = 220/488 (45%), Positives = 299/488 (61%), Gaps = 3/488 (0%)
Frame = +2
Query: 44 NSGVMEVTSSMRDAAPLLNARNLPNVSKIESFNGSHFKRWRERVFTALDVLNYAKYLTDT 223
N TS++ A + A+ P+VSKIE F G +F+RW+ERV T LD+ A LT
Sbjct: 8 NDNTAPETSNVVSATQTIFAKLFPDVSKIEVFTGQNFRRWQERVSTLLDMYGVAHALTTA 67
Query: 224 APMEGSNDFERNQAAWLNGNKVCRHAILSTLSNEIFDIYCSNKNAHDIWESLNKKYIIED 403
P S + W++ NKVCRH +LS LSN++FD+Y S KNA DIW+SL KY ED
Sbjct: 68 KP--DSTTAAKQVDDWIHANKVCRHTLLSVLSNDLFDVYASYKNAKDIWDSLILKYTAED 125
Query: 404 AGTQKYAIGTFLKFHMREDRDVTSQIHDFHVLINDLKTEGINLPETFVAGCLIEKLPESW 583
Q++ I + ++ M + +D+ QI+++H LI D+KTE I LP+ FV+ LIEKLP+SW
Sbjct: 126 IVRQRFVIAKYYRWEMIKGKDIKIQINEYHKLIEDIKTESIKLPDEFVSELLIEKLPQSW 185
Query: 584 KHYKNSMKHKRKQMTLEDVIIHIHIEEKN-KTRDEVLSKEFHSKANIIEGNPXXXXXXXX 760
YK +KH++KQM+L D+I HI IE+ N K +K +KAN+IE P
Sbjct: 186 TDYKQQLKHRQKQMSLSDLITHIIIEDTNRKECAAAKAKALSAKANVIEDKPAPKRYEKK 245
Query: 761 XXXXXXXXXXXXXGTSFKRSGTGNGNCYVCGKPGHRAFQCRHKKDTDDPPNANLVEGDDI 940
+ + GNC+VCGKPGH A QCRH+ D PP ANL EG+D
Sbjct: 246 FDHKKKPNNKFSRPSGTNPTFKKKGNCFVCGKPGHHAPQCRHRAKNDYPPKANLAEGEDT 305
Query: 941 VAAVVSQVFIATGKRNWVLDSGATRHVCGDVEAFSDYILVKD--EKVYMGDSRSVPVEXX 1114
+ AVVSQV + T WV+DSGATRH+C + F+ Y V D E+VY+GDSR+ PV
Sbjct: 306 IVAVVSQVNLVTNVSKWVVDSGATRHICANRNVFTSYTSVGDGEEQVYLGDSRTTPVLGK 365
Query: 1115 XXXXXXXXXXXXXXXXNVLHVPEIRQNLISVSLLGKAGVKVTFESDKFVLTKNEGFVGKG 1294
+VLHVP IR NL+SV+LL K GVKV+FESDK V+TKN FVGKG
Sbjct: 366 GKVLLKLTSGKTLALNDVLHVPSIRVNLVSVALLSKVGVKVSFESDKIVITKNNVFVGKG 425
Query: 1295 YCNNSGLFMLNVLDNIIINKNESASAYLLDSFNI*HGRLGHVNVQYMKRMKACGLLSNIS 1474
YC + GLF+LN+ + I+N++ S SAY++DS++I H RLGHVN Y+ +++ GL+ N+
Sbjct: 426 YC-DQGLFVLNISE--IMNESTS-SAYIVDSYDIWHARLGHVNSSYVIKLQRLGLI-NMH 480
Query: 1475 DFSNDKCE 1498
D + KC+
Sbjct: 481 DKESSKCD 488
>emb|CAN76580.1| hypothetical protein VITISV_025642 [Vitis vinifera]
Length = 1046
Score = 371 bits (953), Expect = e-100
Identities = 222/476 (46%), Positives = 281/476 (59%), Gaps = 8/476 (1%)
Frame = +2
Query: 113 PNVSKIESFNGSHFKRWRERVFTALDVLNYAKYLTDTAPMEGSNDFERNQAAWLNGNKVC 292
PN SKI+ FNG+ FKRW+ERVF +DV+ LTD +GS+ W NK
Sbjct: 10 PNTSKIDPFNGTFFKRWQERVFATIDVVXLGHILTDPKLEDGSHLLP----TWETRNKQV 65
Query: 293 RHAILSTLSNEIFDIYCSNKNAHDIWESLNKKYIIEDAGTQKYAIGTFLKFHMREDRDVT 472
RHAILSTLS EIFDIY Y+ TQKYAI F F M EDRDV+
Sbjct: 66 RHAILSTLSXEIFDIY----------------YVX----TQKYAIXNFRNFQMMEDRDVS 105
Query: 473 SQIHDFHVLINDLKTEGINLPETFVAGCLIEKLPESWKHYKNSMKHKRKQMTLEDVIIHI 652
SQIHD+H+LINDL E I LP F+A L+E L +SWK +MKHKRKQM+LEDVIIHI
Sbjct: 106 SQIHDYHLLINDLAIEDIKLPGPFMASYLVETLLKSWKDXXXNMKHKRKQMSLEDVIIHI 165
Query: 653 HIEEKNKTRDEV-LSKEFHSKANIIEGNP---XXXXXXXXXXXXXXXXXXXXXGTSFKRS 820
IEE+N+ RD V +KE SKAN++E P T KR
Sbjct: 166 RIEEQNRNRDNVEKAKELSSKANVVEEKPKPKNNRSRKQNFRTKPNASNKVQQSTIKKR- 224
Query: 821 GTGNGNCYVCGKPGHRAFQCRHKKDTD-DPPNANLVEGDDIVAAVVSQVFIATGKRNWVL 997
GNC+VCGK H A QCRH+K T+ ANLV + I + +V T ++WV+
Sbjct: 225 ----GNCFVCGKSRHHAAQCRHRKRTEKSNSKANLVXAEVITKVISFEVSTVTNMKDWVV 280
Query: 998 DSGATRHVCGDVEAFSDYILVK--DEKVYMGDSRSVPVEXXXXXXXXXXXXXXXXXXNVL 1171
+S TRH+CG+ AF+ Y +K +E+V++GDSRS+ V +VL
Sbjct: 281 BSRVTRHICGNKSAFTSYTTIKEGEEQVFIGDSRSIQVIGKGKVLIKLTSRKVLTLSDVL 340
Query: 1172 HVPEIRQNLISVSLLGKAGVKVTFESDKFVLTKNEGFVGKGYCNNSGLFMLNVLDNIIIN 1351
HV +I NL+S+SLLGKA V++ F+SDK VLTKN+ FVGKGYC N GLFMLNV D IIN
Sbjct: 341 HVLDICWNLVSLSLLGKARVRILFDSDKIVLTKNDAFVGKGYC-NQGLFMLNVYD--IIN 397
Query: 1352 KNESA-SAYLLDSFNI*HGRLGHVNVQYMKRMKACGLLSNISDFSNDKCEICAETK 1516
N S+ SAY++DS +I HGRLGHVN YMK+M L+ +S ++ K + T+
Sbjct: 398 YNASSFSAYIVDSCDIWHGRLGHVNFSYMKKMVELSLIPKLSLENHGKYDYSRYTR 453
>gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]
Length = 701
Score = 316 bits (809), Expect = 1e-83
Identities = 178/475 (37%), Positives = 273/475 (57%), Gaps = 13/475 (2%)
Frame = +2
Query: 131 ESFNGSHFKRWRERVFTALDVLNYAKYLTDTAPM--EGSNDFERNQA--AWLNGNKVCRH 298
E FNG +FKRW++++F L LN A++LT AP EG D + A AW + + +C++
Sbjct: 43 EKFNGQNFKRWQQKMFFYLTTLNLARFLTKDAPKPKEGETDIQVASAIDAWHHSDFLCKN 102
Query: 299 AILSTLSNEIFDIYCSNKNAHDIWESLNKKYIIEDAGTQKYAIGTFLKFHMREDRDVTSQ 478
+++ LS+ ++++Y K A ++WESL++KY EDAGT+K+ +G FL F M + + V SQ
Sbjct: 103 YVMNGLSDSLYNVYIGKKTAKELWESLDRKYKTEDAGTKKFVVGRFLDFKMVDSKTVISQ 162
Query: 479 IHDFHVLINDLKTEGINLPETFVAGCLIEKLPESWKHYKNSMKHKRKQMTLEDVIIHIHI 658
+ + ++++++ EG++L ETF +IEKLP +WK +K+ +KHK+K+M +E +++ + I
Sbjct: 163 VQELQIILSEILAEGMHLSETFQVAAIIEKLPPAWKDFKSYLKHKQKEMNIEGLVVKLRI 222
Query: 659 EEKNKTRDEVLSKEFHSKANIIEGNPXXXXXXXXXXXXXXXXXXXXXGTSFKRSGTGNGN 838
EE N+ + + + +KAN +E P G K+ G
Sbjct: 223 EEDNRNAERIGAISM-AKANFVEHGP-----------KKKKKKLGPKGGISKKQTKFQGK 270
Query: 839 CYVCGKPGHRAFQCRHKKDTDDPPNANLVE------GDDIVAAVVSQV-FIATGKRNWVL 997
CY C K GH+A CR K + AN+VE D ++AVV +V + + R W +
Sbjct: 271 CYNCDKMGHKASDCRLPKKKRE---ANVVENITQHVSDINLSAVVLEVNMVGSNPREWWI 327
Query: 998 DSGATRHVCGDVEAFSDYILVKD-EKVYMGDSRSVPVEXXXXXXXXXXXXXXXXXXNVLH 1174
D+GATRHVC D F+ + + EK++MG+S + +E NVL+
Sbjct: 328 DTGATRHVCSDKGLFTSFEAASNREKLFMGNSATSEIEGQGKVALKMTSGKELTLNNVLY 387
Query: 1175 VPEIRQNLISVSLLGKAGVKVTFESDKFVLTKNEGFVGKGYCNNSGLFMLNVLD-NIIIN 1351
VPEIR+NL+S SLL K G ++ FESD VL+KN +VGKGY N+ GLF LNV+ IN
Sbjct: 388 VPEIRKNLVSGSLLNKHGFRMVFESDMVVLSKNGMYVGKGYVND-GLFKLNVMTLKPTIN 446
Query: 1352 KNESASAYLLDSFNI*HGRLGHVNVQYMKRMKACGLLSNISDFSNDKCEICAETK 1516
++SAYLL+S NI HGRLGHVN ++++ + N KC+ C E K
Sbjct: 447 NKATSSAYLLESSNIWHGRLGHVNFNSLRKLINMKHIPNFQIDLKHKCKTCVEAK 501
>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
Length = 1316
Score = 308 bits (790), Expect = 2e-81
Identities = 180/518 (34%), Positives = 291/518 (56%), Gaps = 14/518 (2%)
Frame = +2
Query: 5 MSTPVDTTPIKETNSGVMEVTSSMRDAAPLLNARNLPNVSKIESFNGSHFKRWRERVFTA 184
M+T D + E + V T + A P ++ K E F+G +FKRW++++
Sbjct: 1 MTTESDNVVVTEL-APVATPTVAQVPAMPTAVPISVSPGEKPEKFSGLNFKRWQQKMLFY 59
Query: 185 LDVLNYAKYLTDTAPM--EGSNDFERNQA--AWLNGNKVCRHAILSTLSNEIFDIYCSNK 352
L LN A++LT+ AP E +D + A AW + + +CR+ +++ L++ ++++Y K
Sbjct: 60 LTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSLYNVYSDKK 119
Query: 353 NAHDIWESLNKKYIIEDAGTQKYAIGTFLKFHMREDRDVTSQIHDFHVLINDLKTEGINL 532
A ++WESL++KY EDAG +K+ +G FL + M + + V SQ+ + V+++++ EG+ L
Sbjct: 120 TAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAEGMML 179
Query: 533 PETFVAGCLIEKLPESWKHYKNSMKHKRKQMTLEDVIIHIHIEEKNKTRDEVLSKEFH-S 709
ETF +IEKLP +WK +KN +KHKRK+M++ED+II + IEE N+ ++ + + +
Sbjct: 180 SETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHTLNEA 239
Query: 710 KANIIEGNPXXXXXXXXXXXXXXXXXXXXXGTSFKRSGTGNGNCYVCGKPGHRAFQCRHK 889
KAN +E + G C+ CGK GH++ CR
Sbjct: 240 KANFVEHGQSSKAKTNNNKGKGSKLGPKG---GISKKPKFQGKCFNCGKQGHKSVDCRLP 296
Query: 890 KDTDDPPNANLVEG------DDIVAAVVSQV-FIATGKRNWVLDSGATRHVCGDVEAFSD 1048
K + P AN+++ D + AVVS+V + + + W +D+GATRHVC D + FS
Sbjct: 297 K-KNKPKEANVIDDITKNVYDIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFST 355
Query: 1049 YILVKD-EKVYMGDSRSVPVEXXXXXXXXXXXXXXXXXXNVLHVPEIRQNLISVSLLGKA 1225
+ +++ EKV+MG+S + ++ NVL+VPEIR+NL+S SLL
Sbjct: 356 FEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNH 415
Query: 1226 GVKVTFESDKFVLTKNEGFVGKGYCNNSGLFMLNVLDNIIINKNE-SASAYLLDSFNI*H 1402
G ++ F S+K VL+K+ +VGKGY ++ G++ LNV+ I N N+ S S Y+L+S N+ H
Sbjct: 416 GFRLVFXSNKVVLSKSGMYVGKGYMSD-GMWKLNVMTIIKSNMNKASTSTYMLESSNLWH 474
Query: 1403 GRLGHVNVQYMKRMKACGLLSNISDFSNDKCEICAETK 1516
GRLGHVN ++R+ + SN KCE C E K
Sbjct: 475 GRLGHVNYDTLRRLINLNHIPTFQINSNHKCETCVEAK 512
>emb|CAN66576.1| hypothetical protein VITISV_016964 [Vitis vinifera]
Length = 1316
Score = 305 bits (781), Expect = 2e-80
Identities = 177/478 (37%), Positives = 264/478 (55%), Gaps = 8/478 (1%)
Frame = +2
Query: 107 NLPNVSKIESFNGSHFKRWRERVFTALDVLNYAKYLTDTAPM--EGSNDFERNQA--AWL 274
NL + K E FNG+ FKRW++++ L LN A++L + P+ EG + E+ AW
Sbjct: 204 NLIHGEKPEKFNGNEFKRWQQKMLFYLTTLNLARFLHEECPILEEGETNKEKVAVVDAWK 263
Query: 275 NGNKVCRHAILSTLSNEIFDIYCSNKNAHDIWESLNKKYIIEDAGTQKYAIGTFLKFHMR 454
+ + +CR+ +L+ L N ++++YCS K A ++W+SL+KKY EDAG +K+ +G FL F M
Sbjct: 264 HSDFLCRNYMLNGLDNTLYNVYCSLKTAKELWDSLDKKYKTEDAGIKKFIVGKFLDFKMI 323
Query: 455 EDRDVTSQIHDFHVLINDLKTEGINLPETFVAGCLIEKLPESWKHYKNSMKHKRKQMTLE 634
+ + V SQ+ + V+++++ +EG++ ++F +IEKLP WK +KN +KHKRK+M LE
Sbjct: 324 DSKTVISQVQELQVILHEIHSEGMSFSDSFQVAAVIEKLPPLWKDFKNYLKHKRKEMNLE 383
Query: 635 DVIIHIHIEEKNKTRDEVLSKEFHSKANIIEGNPXXXXXXXXXXXXXXXXXXXXXGTSFK 814
++I+ + IEE N+ ++ + +KAN+IE P FK
Sbjct: 384 ELIVRLRIEEDNRKSEKKGNNSMEAKANVIEQGP--KTNKKRKHGDQNQNQESNVAKKFK 441
Query: 815 RSGTGNGNCYVCGKPGHRAFQCRHKKDTDDPPNANLVEGDDIVAAVVSQVFIATGKRNWV 994
G CY CGK GH++ R+ K+ W
Sbjct: 442 ------GKCYNCGKTGHKSNDYRNTKE-------------------------------WW 464
Query: 995 LDSGATRHVCGDVEAFSDYILV-KDEKVYMGDSRSVPVEXXXXXXXXXXXXXXXXXXNVL 1171
+D+GATRH+C + FS Y V ++E+++MG+S S +E +VL
Sbjct: 465 VDTGATRHICSNKWMFSTYKPVEQNEELFMGNSSSSKIEGRGKVILKMTSGKELTLNDVL 524
Query: 1172 HVPEIRQNLISVSLLGKAGVKVTFESDKFVLTKNEGFVGKGYCNNSGLFMLNVLDNI--- 1342
HVP+I +NL+S SLL K G K+ F SDKFVLTKNE FVGKGY ++ GLF +NV+ +
Sbjct: 525 HVPDICKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSD-GLFKMNVMTVVPKS 583
Query: 1343 IINKNESASAYLLDSFNI*HGRLGHVNVQYMKRMKACGLLSNISDFSNDKCEICAETK 1516
I N +SAYLL S NI HGRLGHVN + R+ L + N KCE C E+K
Sbjct: 584 INNNKIDSSAYLLKSSNIWHGRLGHVNYDTLCRLIHLDYLPKFNIDPNHKCETCVESK 641