BLASTX nr result
ID: Coptis25_contig00016217
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00016217
(1110 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containi... 531 e-148
ref|XP_002324029.1| predicted protein [Populus trichocarpa] gi|2... 520 e-145
dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana] 514 e-143
ref|NP_198814.1| pentatricopeptide repeat-containing protein [Ar... 514 e-143
ref|XP_002870737.1| pentatricopeptide repeat-containing protein ... 514 e-143
>ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic [Vitis vinifera]
gi|296087770|emb|CBI35026.3| unnamed protein product
[Vitis vinifera]
Length = 675
Score = 531 bits (1367), Expect = e-148
Identities = 264/319 (82%), Positives = 294/319 (92%)
Frame = +2
Query: 2 FWSMRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK 181
FWSMR+MGIEP +VSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK
Sbjct: 353 FWSMRKMGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK 412
Query: 182 SLEHEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVL 361
SLEHEKATNLVQEMQ+RG+EPNA+TYSTIISIW KAGKLDRAAMLFQKLR+SG+EIDQVL
Sbjct: 413 SLEHEKATNLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAAMLFQKLRSSGIEIDQVL 472
Query: 362 YQTMIVAYERAGLVGHAKRLLHELKRPDNIPRETAITILAGAGRIEEATWIFRQAFIEGE 541
YQTMIVAYERAGLV HAKRLLHELKRPDNIPRETAITILAGAGRIEEATW+FRQAF GE
Sbjct: 473 YQTMIVAYERAGLVAHAKRLLHELKRPDNIPRETAITILAGAGRIEEATWVFRQAFDAGE 532
Query: 542 VKDISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEI 721
VKDI+VFGCMIDL SRN+KH VIEVF+KMR AGYFPD+ I+ VLNA GKLREFEKA+
Sbjct: 533 VKDITVFGCMIDLFSRNRKHTNVIEVFDKMRGAGYFPDSNVIALVLNACGKLREFEKADA 592
Query: 722 IYKEMQEERCVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNVNKRELNLVVSSIVE 901
IYKEM+EE CVF DE+HFQMLSLYGA+G+ + V+ LF+RL+SDPN+NK+EL+LVV+SI E
Sbjct: 593 IYKEMEEEGCVFSDEVHFQMLSLYGARGDFQMVDSLFERLDSDPNINKKELHLVVASIYE 652
Query: 902 KRKKRLDDASRISSQRRER 958
R RL+DAS+I ++ RER
Sbjct: 653 -RANRLNDASQIMNRMRER 670
Score = 105 bits (263), Expect = 2e-20
Identities = 63/287 (21%), Positives = 142/287 (49%), Gaps = 4/287 (1%)
Frame = +2
Query: 11 MRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLE 190
M + + ++V Y+ L+ + + + +AI +F ++R I ++V YN+MI ++GK+
Sbjct: 216 MEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGISPDLVAYNSMINVFGKAKL 275
Query: 191 HEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQT 370
+A L+ EM++ GV P+ V+YST++S++ + GK A +F ++ +D
Sbjct: 276 FREARLLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVEALSVFSEMNEVRCPLDLTTCNV 335
Query: 371 MIVAYERAGLVGHAKRLLHELKR----PDNIPRETAITILAGAGRIEEATWIFRQAFIEG 538
MI Y + + A RL +++ P + T + + A EA +FR +
Sbjct: 336 MIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQRKD 395
Query: 539 EVKDISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAE 718
+++ + MI + ++ +H + ++M+ G P+AI+ S +++ + K + ++A
Sbjct: 396 IEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAA 455
Query: 719 IIYKEMQEERCVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNV 859
+++++++ ++ M+ Y G + + L L+ N+
Sbjct: 456 MLFQKLRSSGIEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNI 502
Score = 100 bits (249), Expect = 6e-19
Identities = 75/294 (25%), Positives = 137/294 (46%), Gaps = 10/294 (3%)
Frame = +2
Query: 5 WSMRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKS 184
W P+V +YN ++R A+ + A LF M+++ + + TY+T+I +GK
Sbjct: 144 WINEEASYSPSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTYSTLITHFGKE 203
Query: 185 LEHEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLY 364
+ A + +Q+M+ V + V YS +I + K +A +F +L+ SG+ D V Y
Sbjct: 204 GMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGISPDLVAY 263
Query: 365 QTMIVAYERAGLVGHAKRLLHELK----RPDNIPRETAITILAGAGRIEEATWIFRQAFI 532
+MI + +A L A+ LL E++ PD + T +++ G+ EA +F +
Sbjct: 264 NSMINVFGKAKLFREARLLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVEALSVFSEM-- 321
Query: 533 EGEVK---DISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLRE 703
EV+ D++ MID+ + +F MR G P +S + +L YG+
Sbjct: 322 -NEVRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYNTLLRVYGEAEL 380
Query: 704 FEKAEIIYKEMQEERCVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLES---DPN 856
F +A +++ MQ + + M+ +YG E L +++ +PN
Sbjct: 381 FGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQNRGIEPN 434
>ref|XP_002324029.1| predicted protein [Populus trichocarpa] gi|222867031|gb|EEF04162.1|
predicted protein [Populus trichocarpa]
Length = 629
Score = 520 bits (1339), Expect = e-145
Identities = 258/315 (81%), Positives = 288/315 (91%)
Frame = +2
Query: 2 FWSMRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK 181
FWSMR+MGIEPNVVSYNTLLRVYGE ELFGEAIHLFRLMQ+KDIEQNVVTYNTMIK+YGK
Sbjct: 305 FWSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGK 364
Query: 182 SLEHEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVL 361
SLEHEKATNL+QEMQ+RG+EPNA+TYSTIISIW KAGKLDRAAMLFQKLR+SGVEIDQVL
Sbjct: 365 SLEHEKATNLMQEMQNRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVL 424
Query: 362 YQTMIVAYERAGLVGHAKRLLHELKRPDNIPRETAITILAGAGRIEEATWIFRQAFIEGE 541
YQTMIVAYER+GLV HAKRLLHELK PD+IPRETAI ILA AGRIEEATW+FRQAF GE
Sbjct: 425 YQTMIVAYERSGLVAHAKRLLHELKHPDSIPRETAIKILARAGRIEEATWVFRQAFDAGE 484
Query: 542 VKDISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEI 721
VKDISVFGCM+DL SRN+K A VIEVFEKMR AGYFPD+ I+ VLNAYGKL EFEKA+
Sbjct: 485 VKDISVFGCMVDLFSRNRKPANVIEVFEKMRGAGYFPDSNVIALVLNAYGKLHEFEKADA 544
Query: 722 IYKEMQEERCVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNVNKRELNLVVSSIVE 901
+YKEMQEE CVFPDE+HFQMLSLYGA+ + +E LF+RL+SDPN+NK+EL+LVV+SI E
Sbjct: 545 LYKEMQEEECVFPDEVHFQMLSLYGARKDFMMIEALFERLDSDPNINKKELHLVVASIYE 604
Query: 902 KRKKRLDDASRISSQ 946
RK RL+DASRI ++
Sbjct: 605 -RKNRLNDASRIMNR 618
Score = 106 bits (265), Expect = 9e-21
Identities = 67/321 (20%), Positives = 158/321 (49%), Gaps = 6/321 (1%)
Frame = +2
Query: 2 FW--SMRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIY 175
FW M + + ++V Y+ L+ + + + +AI +F ++R I ++V YN+MI ++
Sbjct: 163 FWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMINVF 222
Query: 176 GKSLEHEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQ 355
GK+ +A L++EM+ GV P+ V+YST++S++ + K A +F ++ + +D
Sbjct: 223 GKAKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDL 282
Query: 356 VLYQTMIVAYERAGLVGHAKRLLHELKR----PDNIPRETAITILAGAGRIEEATWIFRQ 523
MI Y + + A RL +++ P+ + T + + EA +FR
Sbjct: 283 TTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRL 342
Query: 524 AFIEGEVKDISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLRE 703
+ +++ + MI + ++ +H + ++M+ G P+AI+ S +++ +GK +
Sbjct: 343 MQKKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIISIWGKAGK 402
Query: 704 FEKAEIIYKEMQEERCVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNVNKRELNLV 883
++A +++++++ ++ M+ Y G + + L L+ ++ + +
Sbjct: 403 LDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERSGLVAHAKRLLHELKHPDSIPRETAIKI 462
Query: 884 VSSIVEKRKKRLDDASRISSQ 946
++ R R+++A+ + Q
Sbjct: 463 LA-----RAGRIEEATWVFRQ 478
Score = 99.0 bits (245), Expect = 2e-18
Identities = 80/312 (25%), Positives = 139/312 (44%), Gaps = 40/312 (12%)
Frame = +2
Query: 32 PNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNL 211
P+V +YN +LR A+ + A LF M+ + + + TY+T+I +GK+ + +
Sbjct: 105 PSVFAYNVVLRNVLRAKQWDHAHGLFDEMRNRALAPDRYTYSTLITHFGKAGMFDASLFW 164
Query: 212 VQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQTMIVAYER 391
+Q+M+ V + V YS +I + K +A +F +L+ SG+ D V Y +MI + +
Sbjct: 165 LQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMINVFGK 224
Query: 392 AGLVGHAKRLLHELKR----PDNIPRETAITILAGAGRIEEATWIFRQAFIEGEVKDISV 559
A L AK L+ E++ PD + T +++ + EA +F + D++
Sbjct: 225 AKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDLTT 284
Query: 560 FGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVL-------------------- 679
MID+ + +F MR G P+ +S + +L
Sbjct: 285 CNVMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQ 344
Query: 680 ---------------NAYGKLREFEKAEIIYKEMQEERCVFPDEIHFQ-MLSLYGAQGNL 811
YGK E EKA + +EMQ R + P+ I + ++S++G G L
Sbjct: 345 KKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQ-NRGIEPNAITYSTIISIWGKAGKL 403
Query: 812 EAVEMLFDRLES 847
+ MLF +L S
Sbjct: 404 DRAAMLFQKLRS 415
>dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
Length = 546
Score = 514 bits (1324), Expect = e-143
Identities = 255/324 (78%), Positives = 290/324 (89%)
Frame = +2
Query: 2 FWSMRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK 181
FWS+R+M IEPNVVSYNT+LRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK
Sbjct: 221 FWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK 280
Query: 182 SLEHEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVL 361
++EHEKATNLVQEMQSRG+EPNA+TYSTIISIW KAGKLDRAA LFQKLR+SGVEIDQVL
Sbjct: 281 TMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVL 340
Query: 362 YQTMIVAYERAGLVGHAKRLLHELKRPDNIPRETAITILAGAGRIEEATWIFRQAFIEGE 541
YQTMIVAYER GL+GHAKRLLHELK PDNIPRETAITILA AGR EEATW+FRQAF GE
Sbjct: 341 YQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGE 400
Query: 542 VKDISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEI 721
VKDISVFGCMI+L SRN+++ VIEVFEKMR AGYFPD+ I+ VLNAYGK REFEKA+
Sbjct: 401 VKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADT 460
Query: 722 IYKEMQEERCVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNVNKRELNLVVSSIVE 901
+Y+EMQEE CVFPDE+HFQMLSLY ++ + E VE LF RLESDPNVN +EL+LVV+++ E
Sbjct: 461 VYREMQEEGCVFPDEVHFQMLSLYSSKKDFEMVESLFQRLESDPNVNSKELHLVVAALYE 520
Query: 902 KRKKRLDDASRISSQRRERLLAEP 973
R +L+DASR+ ++ RER + +P
Sbjct: 521 -RADKLNDASRVMNRMRERGILKP 543
Score = 113 bits (283), Expect = 7e-23
Identities = 71/287 (24%), Positives = 143/287 (49%), Gaps = 4/287 (1%)
Frame = +2
Query: 11 MRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLE 190
M + + ++V Y+ L+ + + +AI +F ++R I ++V YN+MI +YGK+
Sbjct: 84 MEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKL 143
Query: 191 HEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQT 370
+A L++EM GV PN V+YST++S++ + K A +F +++ +D
Sbjct: 144 FREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNI 203
Query: 371 MIVAYERAGLVGHAKRLLHELKRPDNIPRETAI-TILAGAGRIE---EATWIFRQAFIEG 538
MI Y + +V A RL L++ D P + TIL G E EA +FR +
Sbjct: 204 MIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKD 263
Query: 539 EVKDISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAE 718
+++ + MI + + +H + ++M++ G P+AI+ S +++ +GK + ++A
Sbjct: 264 IEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAA 323
Query: 719 IIYKEMQEERCVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNV 859
++++++ ++ M+ Y G + + L L+ N+
Sbjct: 324 TLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNI 370
Score = 98.2 bits (243), Expect = 3e-18
Identities = 67/290 (23%), Positives = 140/290 (48%), Gaps = 8/290 (2%)
Frame = +2
Query: 2 FWSMRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK 181
F MR+ + P+ +Y+TL+ +G+ +F A+ + M++ + ++V Y+ +I++ +
Sbjct: 46 FDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRR 105
Query: 182 SLEHEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVL 361
++ KA ++ ++ G+ P+ V Y+++I+++ KA A +L +++ +GV + V
Sbjct: 106 LCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVS 165
Query: 362 YQTMIVAYERAGLVGHAKRLLHELKRP----DNIPRETAITILAGAGRIEEAT---WIFR 520
Y T++ Y A + E+K D I + ++EA W R
Sbjct: 166 YSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLR 225
Query: 521 QAFIEGEVKDISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLR 700
+ IE V + ++ + + I +F M+ + ++ + ++ YGK
Sbjct: 226 KMDIEPNVVS---YNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTM 282
Query: 701 EFEKAEIIYKEMQEERCVFPDEIHFQ-MLSLYGAQGNLEAVEMLFDRLES 847
E EKA + +EMQ R + P+ I + ++S++G G L+ LF +L S
Sbjct: 283 EHEKATNLVQEMQ-SRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRS 331
Score = 97.1 bits (240), Expect = 7e-18
Identities = 71/291 (24%), Positives = 132/291 (45%), Gaps = 7/291 (2%)
Frame = +2
Query: 5 WSMRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKS 184
W P+V +YN +LR A+ F A LF M+++ + + TY+T+I +GK
Sbjct: 12 WVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKE 71
Query: 185 LEHEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLY 364
+ A + +Q+M+ V + V YS +I + + +A +F +L+ SG+ D V Y
Sbjct: 72 GMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAY 131
Query: 365 QTMIVAYERAGLVGHAKRLLHELKR----PDNIPRETAITILAGAGRIEEATWIFRQAFI 532
+MI Y +A L A+ L+ E+ P+ + T +++ + EA +F +
Sbjct: 132 NSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKE 191
Query: 533 EGEVKDISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEK 712
D++ MID+ + +F +R P+ +S + +L YG+ F +
Sbjct: 192 VNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGE 251
Query: 713 AEIIYKEMQEERCVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLES---DPN 856
A +++ MQ + + M+ +YG E L ++S +PN
Sbjct: 252 AIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPN 302
>ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At5g39980, chloroplastic; Flags: Precursor
gi|10176990|dbj|BAB10222.1| unnamed protein product
[Arabidopsis thaliana] gi|332007115|gb|AED94498.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 678
Score = 514 bits (1324), Expect = e-143
Identities = 255/324 (78%), Positives = 290/324 (89%)
Frame = +2
Query: 2 FWSMRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK 181
FWS+R+M IEPNVVSYNT+LRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK
Sbjct: 353 FWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK 412
Query: 182 SLEHEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVL 361
++EHEKATNLVQEMQSRG+EPNA+TYSTIISIW KAGKLDRAA LFQKLR+SGVEIDQVL
Sbjct: 413 TMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVL 472
Query: 362 YQTMIVAYERAGLVGHAKRLLHELKRPDNIPRETAITILAGAGRIEEATWIFRQAFIEGE 541
YQTMIVAYER GL+GHAKRLLHELK PDNIPRETAITILA AGR EEATW+FRQAF GE
Sbjct: 473 YQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGE 532
Query: 542 VKDISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEI 721
VKDISVFGCMI+L SRN+++ VIEVFEKMR AGYFPD+ I+ VLNAYGK REFEKA+
Sbjct: 533 VKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADT 592
Query: 722 IYKEMQEERCVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNVNKRELNLVVSSIVE 901
+Y+EMQEE CVFPDE+HFQMLSLY ++ + E VE LF RLESDPNVN +EL+LVV+++ E
Sbjct: 593 VYREMQEEGCVFPDEVHFQMLSLYSSKKDFEMVESLFQRLESDPNVNSKELHLVVAALYE 652
Query: 902 KRKKRLDDASRISSQRRERLLAEP 973
R +L+DASR+ ++ RER + +P
Sbjct: 653 -RADKLNDASRVMNRMRERGILKP 675
Score = 113 bits (283), Expect = 7e-23
Identities = 71/287 (24%), Positives = 143/287 (49%), Gaps = 4/287 (1%)
Frame = +2
Query: 11 MRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLE 190
M + + ++V Y+ L+ + + +AI +F ++R I ++V YN+MI +YGK+
Sbjct: 216 MEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKL 275
Query: 191 HEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQT 370
+A L++EM GV PN V+YST++S++ + K A +F +++ +D
Sbjct: 276 FREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNI 335
Query: 371 MIVAYERAGLVGHAKRLLHELKRPDNIPRETAI-TILAGAGRIE---EATWIFRQAFIEG 538
MI Y + +V A RL L++ D P + TIL G E EA +FR +
Sbjct: 336 MIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKD 395
Query: 539 EVKDISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAE 718
+++ + MI + + +H + ++M++ G P+AI+ S +++ +GK + ++A
Sbjct: 396 IEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAA 455
Query: 719 IIYKEMQEERCVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNV 859
++++++ ++ M+ Y G + + L L+ N+
Sbjct: 456 TLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNI 502
Score = 98.2 bits (243), Expect = 3e-18
Identities = 67/290 (23%), Positives = 140/290 (48%), Gaps = 8/290 (2%)
Frame = +2
Query: 2 FWSMRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK 181
F MR+ + P+ +Y+TL+ +G+ +F A+ + M++ + ++V Y+ +I++ +
Sbjct: 178 FDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRR 237
Query: 182 SLEHEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVL 361
++ KA ++ ++ G+ P+ V Y+++I+++ KA A +L +++ +GV + V
Sbjct: 238 LCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVS 297
Query: 362 YQTMIVAYERAGLVGHAKRLLHELKRP----DNIPRETAITILAGAGRIEEAT---WIFR 520
Y T++ Y A + E+K D I + ++EA W R
Sbjct: 298 YSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLR 357
Query: 521 QAFIEGEVKDISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLR 700
+ IE V + ++ + + I +F M+ + ++ + ++ YGK
Sbjct: 358 KMDIEPNVVS---YNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTM 414
Query: 701 EFEKAEIIYKEMQEERCVFPDEIHFQ-MLSLYGAQGNLEAVEMLFDRLES 847
E EKA + +EMQ R + P+ I + ++S++G G L+ LF +L S
Sbjct: 415 EHEKATNLVQEMQ-SRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRS 463
Score = 97.1 bits (240), Expect = 7e-18
Identities = 71/291 (24%), Positives = 132/291 (45%), Gaps = 7/291 (2%)
Frame = +2
Query: 5 WSMRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKS 184
W P+V +YN +LR A+ F A LF M+++ + + TY+T+I +GK
Sbjct: 144 WVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKE 203
Query: 185 LEHEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLY 364
+ A + +Q+M+ V + V YS +I + + +A +F +L+ SG+ D V Y
Sbjct: 204 GMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAY 263
Query: 365 QTMIVAYERAGLVGHAKRLLHELKR----PDNIPRETAITILAGAGRIEEATWIFRQAFI 532
+MI Y +A L A+ L+ E+ P+ + T +++ + EA +F +
Sbjct: 264 NSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKE 323
Query: 533 EGEVKDISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEK 712
D++ MID+ + +F +R P+ +S + +L YG+ F +
Sbjct: 324 VNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGE 383
Query: 713 AEIIYKEMQEERCVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLES---DPN 856
A +++ MQ + + M+ +YG E L ++S +PN
Sbjct: 384 AIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPN 434
>ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297316573|gb|EFH46996.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 680
Score = 514 bits (1323), Expect = e-143
Identities = 254/324 (78%), Positives = 291/324 (89%)
Frame = +2
Query: 2 FWSMRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK 181
FWS+R+M IEPNVVSYNT+LRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK
Sbjct: 355 FWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK 414
Query: 182 SLEHEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVL 361
++EHEKATNLVQEMQSRG+EPNA+TYSTIISIW KAGKLDRAA LFQKLR+SGVEIDQVL
Sbjct: 415 TMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVL 474
Query: 362 YQTMIVAYERAGLVGHAKRLLHELKRPDNIPRETAITILAGAGRIEEATWIFRQAFIEGE 541
YQTMIVAYER GL+GHAKRLLHELK PDNIPRETAITILA AG EEATW+FRQAF GE
Sbjct: 475 YQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGSTEEATWVFRQAFESGE 534
Query: 542 VKDISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEI 721
VKDISVFGCMI+L SRN+++ VIEVFEKMR AGYFPD+ +I+ VLNAYGK REFEKA+
Sbjct: 535 VKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNAIAMVLNAYGKQREFEKADT 594
Query: 722 IYKEMQEERCVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNVNKRELNLVVSSIVE 901
+Y+EMQEE CVFPDE+HFQMLSLY ++ + E VE LF+RLESDPNVN +EL+LVV+++ E
Sbjct: 595 VYREMQEEGCVFPDEVHFQMLSLYSSKKDFEMVESLFERLESDPNVNSKELHLVVAALYE 654
Query: 902 KRKKRLDDASRISSQRRERLLAEP 973
R +L+DASR+ ++ RER + +P
Sbjct: 655 -RADKLNDASRVMNRMRERGILKP 677
Score = 115 bits (287), Expect = 3e-23
Identities = 71/287 (24%), Positives = 144/287 (50%), Gaps = 4/287 (1%)
Frame = +2
Query: 11 MRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLE 190
M + + ++V Y+ L+ + + +AI +F ++R I ++V YN+MI +YGK+
Sbjct: 218 MEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKL 277
Query: 191 HEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQT 370
++A L++EM GV PN V+YST++S++ + K A +F +++ +D
Sbjct: 278 FKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCPLDLTTCNI 337
Query: 371 MIVAYERAGLVGHAKRLLHELKRPDNIPRETAI-TILAGAGRIE---EATWIFRQAFIEG 538
MI Y + +V A RL L++ D P + TIL G E EA +FR +
Sbjct: 338 MIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKD 397
Query: 539 EVKDISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAE 718
+++ + MI + + +H + ++M++ G P+AI+ S +++ +GK + ++A
Sbjct: 398 IEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAA 457
Query: 719 IIYKEMQEERCVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNV 859
++++++ ++ M+ Y G + + L L+ N+
Sbjct: 458 TLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNI 504
Score = 100 bits (248), Expect = 8e-19
Identities = 68/291 (23%), Positives = 142/291 (48%), Gaps = 9/291 (3%)
Frame = +2
Query: 2 FWSMRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK 181
F MR+ + P+ +Y+TL+ +G+ +F A+ + M++ + ++V Y+ +I++ +
Sbjct: 180 FDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRR 239
Query: 182 SLEHEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVL 361
++ KA ++ ++ G+ P+ V Y+++I+++ KA A +L +++ +GV + V
Sbjct: 240 LCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFKEARVLIKEMNEAGVSPNTVS 299
Query: 362 YQTMIVAYERAGLVGHAKRLLHELKRPDNIPRETA-----ITILAGAGRIEEAT---WIF 517
Y T++ Y A + E+K N P + I + ++EA W
Sbjct: 300 YSTLLSVYVENHKFLEALSVFAEMKEV-NCPLDLTTCNIMIDVYGQLDMVKEADRLFWSL 358
Query: 518 RQAFIEGEVKDISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKL 697
R+ IE V + ++ + + I +F M+ + ++ + ++ YGK
Sbjct: 359 RKMDIEPNVVS---YNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKT 415
Query: 698 REFEKAEIIYKEMQEERCVFPDEIHFQ-MLSLYGAQGNLEAVEMLFDRLES 847
E EKA + +EMQ R + P+ I + ++S++G G L+ LF +L S
Sbjct: 416 MEHEKATNLVQEMQ-SRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRS 465
Score = 98.6 bits (244), Expect = 2e-18
Identities = 72/291 (24%), Positives = 133/291 (45%), Gaps = 7/291 (2%)
Frame = +2
Query: 5 WSMRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKS 184
W P+V +YN +LR A+ FG A LF M+++ + + TY+T+I +GK
Sbjct: 146 WVHEEAKYTPSVFAYNVVLRNVLRAKQFGIAHGLFDEMRQRALAPDRYTYSTLITSFGKE 205
Query: 185 LEHEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLY 364
+ A + +Q+M+ V + V YS +I + + +A +F +L+ SG+ D V Y
Sbjct: 206 GMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAY 265
Query: 365 QTMIVAYERAGLVGHAKRLLHELKR----PDNIPRETAITILAGAGRIEEATWIFRQAFI 532
+MI Y +A L A+ L+ E+ P+ + T +++ + EA +F +
Sbjct: 266 NSMINVYGKAKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLEALSVFAEMKE 325
Query: 533 EGEVKDISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEK 712
D++ MID+ + +F +R P+ +S + +L YG+ F +
Sbjct: 326 VNCPLDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGE 385
Query: 713 AEIIYKEMQEERCVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLES---DPN 856
A +++ MQ + + M+ +YG E L ++S +PN
Sbjct: 386 AIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPN 436