BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00016143
         (305 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003541530.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   161   4e-38
ref|XP_003530707.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   161   4e-38
ref|XP_004162101.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-spl...   161   6e-38
ref|XP_004142129.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   161   6e-38
ref|NP_001066507.1| Os12g0256300 [Oryza sativa Japonica Group] g...   157   8e-37

>ref|XP_003541530.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Glycine max]
          Length = 860

 Score =  161 bits (408), Expect = 4e-38
 Identities = 82/106 (77%), Positives = 92/106 (86%), Gaps = 5/106 (4%)
 Frame = -3

Query: 303 QLKRAYKRNDKPQLLAVTDFIAQLVNHE-----VALELLTILLDDPSEDSVEVAVRFVTR 139
           QLKRAYKRNDKPQLLA   FIA LVN +     +ALELLT+LL+ P++DSVEVAV FVT 
Sbjct: 395 QLKRAYKRNDKPQLLAAVKFIAHLVNQQAAHEIIALELLTVLLEKPTDDSVEVAVGFVTE 454

Query: 138 CGSLLQDLSPKALHGIFERFRGILHEGQINKRVQFLIEGLFALRKA 1
           CGS+LQDLSPK LHGIFERFRGILHEG+I+KRVQFLIEGLFA+RKA
Sbjct: 455 CGSILQDLSPKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKA 500


>ref|XP_003530707.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Glycine max]
          Length = 871

 Score =  161 bits (408), Expect = 4e-38
 Identities = 82/106 (77%), Positives = 92/106 (86%), Gaps = 5/106 (4%)
 Frame = -3

Query: 303 QLKRAYKRNDKPQLLAVTDFIAQLVNHE-----VALELLTILLDDPSEDSVEVAVRFVTR 139
           QLKRAYKRNDKPQLLA   FIA LVN +     +ALELLT+LL+ P++DSVEVAV FVT 
Sbjct: 411 QLKRAYKRNDKPQLLAAVKFIAHLVNQQAAHEIIALELLTVLLEKPTDDSVEVAVGFVTE 470

Query: 138 CGSLLQDLSPKALHGIFERFRGILHEGQINKRVQFLIEGLFALRKA 1
           CGS+LQDLSPK LHGIFERFRGILHEG+I+KRVQFLIEGLFA+RKA
Sbjct: 471 CGSILQDLSPKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKA 516


>ref|XP_004162101.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC22
           homolog, partial [Cucumis sativus]
          Length = 780

 Score =  161 bits (407), Expect = 6e-38
 Identities = 82/106 (77%), Positives = 93/106 (87%), Gaps = 5/106 (4%)
 Frame = -3

Query: 303 QLKRAYKRNDKPQLLAVTDFIAQLVNHEVA-----LELLTILLDDPSEDSVEVAVRFVTR 139
           QLKRAYKRNDKPQLLA   FIA LVN +VA     LELLT+LL++P++DSVEVAV FVT 
Sbjct: 332 QLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENPTDDSVEVAVGFVTE 391

Query: 138 CGSLLQDLSPKALHGIFERFRGILHEGQINKRVQFLIEGLFALRKA 1
           CGS+L+DLSPK LHGIFERFRGILHEG+I+KRVQFLIEGLFA+RKA
Sbjct: 392 CGSILKDLSPKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKA 437


>ref|XP_004142129.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Cucumis sativus]
          Length = 797

 Score =  161 bits (407), Expect = 6e-38
 Identities = 82/106 (77%), Positives = 93/106 (87%), Gaps = 5/106 (4%)
 Frame = -3

Query: 303 QLKRAYKRNDKPQLLAVTDFIAQLVNHEVA-----LELLTILLDDPSEDSVEVAVRFVTR 139
           QLKRAYKRNDKPQLLA   FIA LVN +VA     LELLT+LL++P++DSVEVAV FVT 
Sbjct: 332 QLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENPTDDSVEVAVGFVTE 391

Query: 138 CGSLLQDLSPKALHGIFERFRGILHEGQINKRVQFLIEGLFALRKA 1
           CGS+L+DLSPK LHGIFERFRGILHEG+I+KRVQFLIEGLFA+RKA
Sbjct: 392 CGSILKDLSPKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKA 437


>ref|NP_001066507.1| Os12g0256300 [Oryza sativa Japonica Group]
           gi|77554176|gb|ABA96972.1| Pre-mRNA splicing factor
           cwc22, putative, expressed [Oryza sativa Japonica Group]
           gi|113649014|dbj|BAF29526.1| Os12g0256300 [Oryza sativa
           Japonica Group] gi|156622336|emb|CAO82941.1| putative
           pre-mRNA-splicing factor cwc-22 [Oryza sativa Japonica
           Group] gi|215707245|dbj|BAG93705.1| unnamed protein
           product [Oryza sativa Japonica Group]
          Length = 787

 Score =  157 bits (397), Expect = 8e-37
 Identities = 82/106 (77%), Positives = 93/106 (87%), Gaps = 5/106 (4%)
 Frame = -3

Query: 303 QLKRAYKRNDKPQLLAVTDFIAQLVN----HE-VALELLTILLDDPSEDSVEVAVRFVTR 139
           QLKRAYKRNDKPQLLA T FIA LVN    HE VALELLT+LL++P++DSVEVAV FV  
Sbjct: 333 QLKRAYKRNDKPQLLAATKFIAHLVNQVVAHELVALELLTVLLENPTDDSVEVAVGFVKE 392

Query: 138 CGSLLQDLSPKALHGIFERFRGILHEGQINKRVQFLIEGLFALRKA 1
           CG++LQDLSP+ LH IFERFRGILHEG+I+KRVQFLIEGLFA+RKA
Sbjct: 393 CGAMLQDLSPQGLHAIFERFRGILHEGEIDKRVQFLIEGLFAIRKA 438