BLASTX nr result
ID: Coptis25_contig00016065
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00016065
(662 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein... 80 3e-55
ref|XP_004161106.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera... 80 3e-55
ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein... 82 8e-55
ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein... 82 8e-55
ref|XP_002974350.1| hypothetical protein SELMODRAFT_149863 [Sela... 72 3e-41
>ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Cucumis
sativus]
Length = 1074
Score = 79.7 bits (195), Expect(4) = 3e-55
Identities = 35/40 (87%), Positives = 38/40 (95%)
Frame = -1
Query: 260 YQNCLRKFYHNTDTQVLLYLARTHYWAEQWQDCKKTLLRA 141
YQNCLRKFY+NTD Q+LLYLART+Y AEQWQDCKKTLLRA
Sbjct: 734 YQNCLRKFYYNTDYQILLYLARTYYEAEQWQDCKKTLLRA 773
Score = 68.9 bits (167), Expect(4) = 3e-55
Identities = 33/45 (73%), Positives = 36/45 (80%)
Frame = -2
Query: 457 VQEAASRSIFVQMPDVWINLAHVYFAQGQFTLAVKMTSQLYDSFF 323
VQEAAS +IFVQMPDVWINLAHVYFAQG F+LAVKM F+
Sbjct: 698 VQEAASGNIFVQMPDVWINLAHVYFAQGNFSLAVKMYQNCLRKFY 742
Score = 67.4 bits (163), Expect(4) = 3e-55
Identities = 32/36 (88%), Positives = 35/36 (97%)
Frame = -3
Query: 144 SIHLAPSNFTLRFDAGVALQKFSAFTLQKTKRTADE 37
+IHLAPSN+TLRFDAGVA+QKFSA TLQKTKRTADE
Sbjct: 773 AIHLAPSNYTLRFDAGVAMQKFSASTLQKTKRTADE 808
Score = 67.0 bits (162), Expect(4) = 3e-55
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = -1
Query: 662 VLVQHPANLYAANGAAVVLAEKGQFDVSKDIFMQV 558
VLVQHPANLYAANGA V+LAEKGQFDVSKDIF QV
Sbjct: 664 VLVQHPANLYAANGAGVILAEKGQFDVSKDIFTQV 698
>ref|XP_004161106.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase-associated protein
CTR9 homolog [Cucumis sativus]
Length = 1050
Score = 79.7 bits (195), Expect(4) = 3e-55
Identities = 35/40 (87%), Positives = 38/40 (95%)
Frame = -1
Query: 260 YQNCLRKFYHNTDTQVLLYLARTHYWAEQWQDCKKTLLRA 141
YQNCLRKFY+NTD Q+LLYLART+Y AEQWQDCKKTLLRA
Sbjct: 710 YQNCLRKFYYNTDYQILLYLARTYYEAEQWQDCKKTLLRA 749
Score = 68.9 bits (167), Expect(4) = 3e-55
Identities = 33/45 (73%), Positives = 36/45 (80%)
Frame = -2
Query: 457 VQEAASRSIFVQMPDVWINLAHVYFAQGQFTLAVKMTSQLYDSFF 323
VQEAAS +IFVQMPDVWINLAHVYFAQG F+LAVKM F+
Sbjct: 674 VQEAASGNIFVQMPDVWINLAHVYFAQGNFSLAVKMYQNCLRKFY 718
Score = 67.4 bits (163), Expect(4) = 3e-55
Identities = 32/36 (88%), Positives = 35/36 (97%)
Frame = -3
Query: 144 SIHLAPSNFTLRFDAGVALQKFSAFTLQKTKRTADE 37
+IHLAPSN+TLRFDAGVA+QKFSA TLQKTKRTADE
Sbjct: 749 AIHLAPSNYTLRFDAGVAMQKFSASTLQKTKRTADE 784
Score = 67.0 bits (162), Expect(4) = 3e-55
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = -1
Query: 662 VLVQHPANLYAANGAAVVLAEKGQFDVSKDIFMQV 558
VLVQHPANLYAANGA V+LAEKGQFDVSKDIF QV
Sbjct: 640 VLVQHPANLYAANGAGVILAEKGQFDVSKDIFTQV 674
>ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine
max]
Length = 1088
Score = 82.4 bits (202), Expect(4) = 8e-55
Identities = 36/40 (90%), Positives = 38/40 (95%)
Frame = -1
Query: 260 YQNCLRKFYHNTDTQVLLYLARTHYWAEQWQDCKKTLLRA 141
YQNCLRKFYHNTD+Q+LLYLARTHY AEQWQDC KTLLRA
Sbjct: 736 YQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRA 775
Score = 71.2 bits (173), Expect(4) = 8e-55
Identities = 34/45 (75%), Positives = 36/45 (80%)
Frame = -2
Query: 457 VQEAASRSIFVQMPDVWINLAHVYFAQGQFTLAVKMTSQLYDSFF 323
VQEAAS S+FVQMPDVWINLAHVYFAQG FTLAVKM F+
Sbjct: 700 VQEAASGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFY 744
Score = 65.5 bits (158), Expect(4) = 8e-55
Identities = 31/36 (86%), Positives = 34/36 (94%)
Frame = -3
Query: 144 SIHLAPSNFTLRFDAGVALQKFSAFTLQKTKRTADE 37
+IHLAPSN+TLRFDAGVA+QKFSA TLQK KRTADE
Sbjct: 775 AIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADE 810
Score = 62.4 bits (150), Expect(4) = 8e-55
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = -1
Query: 662 VLVQHPANLYAANGAAVVLAEKGQFDVSKDIFMQV 558
VL+QH +NLYAANGAAVVLAEKG FDVSKDIF QV
Sbjct: 666 VLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQV 700
>ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine
max]
Length = 1086
Score = 82.4 bits (202), Expect(4) = 8e-55
Identities = 36/40 (90%), Positives = 38/40 (95%)
Frame = -1
Query: 260 YQNCLRKFYHNTDTQVLLYLARTHYWAEQWQDCKKTLLRA 141
YQNCLRKFYHNTD+Q+LLYLARTHY AEQWQDC KTLLRA
Sbjct: 733 YQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRA 772
Score = 71.2 bits (173), Expect(4) = 8e-55
Identities = 34/45 (75%), Positives = 36/45 (80%)
Frame = -2
Query: 457 VQEAASRSIFVQMPDVWINLAHVYFAQGQFTLAVKMTSQLYDSFF 323
VQEAAS S+FVQMPDVWINLAHVYFAQG FTLAVKM F+
Sbjct: 697 VQEAASGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFY 741
Score = 65.5 bits (158), Expect(4) = 8e-55
Identities = 31/36 (86%), Positives = 34/36 (94%)
Frame = -3
Query: 144 SIHLAPSNFTLRFDAGVALQKFSAFTLQKTKRTADE 37
+IHLAPSN+TLRFDAGVA+QKFSA TLQK KRTADE
Sbjct: 772 AIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADE 807
Score = 62.4 bits (150), Expect(4) = 8e-55
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = -1
Query: 662 VLVQHPANLYAANGAAVVLAEKGQFDVSKDIFMQV 558
VL+QH +NLYAANGAAVVLAEKG FDVSKDIF QV
Sbjct: 663 VLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQV 697
>ref|XP_002974350.1| hypothetical protein SELMODRAFT_149863 [Selaginella moellendorffii]
gi|300157948|gb|EFJ24572.1| hypothetical protein
SELMODRAFT_149863 [Selaginella moellendorffii]
Length = 1041
Score = 71.6 bits (174), Expect(4) = 3e-41
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = -1
Query: 260 YQNCLRKFYHNTDTQVLLYLARTHYWAEQWQDCKKTLLRA 141
YQNCLR+FY NT+T +LLYLARTHY AEQWQ+CK+ L+ A
Sbjct: 731 YQNCLRRFYFNTETNILLYLARTHYEAEQWQECKRVLMHA 770
Score = 60.1 bits (144), Expect(4) = 3e-41
Identities = 28/45 (62%), Positives = 33/45 (73%)
Frame = -2
Query: 457 VQEAASRSIFVQMPDVWINLAHVYFAQGQFTLAVKMTSQLYDSFF 323
VQEAAS ++ V+MPDVW+NLAHVY AQG F LAVKM F+
Sbjct: 695 VQEAASGNVAVEMPDVWVNLAHVYLAQGHFGLAVKMYQNCLRRFY 739
Score = 56.2 bits (134), Expect(4) = 3e-41
Identities = 25/36 (69%), Positives = 30/36 (83%)
Frame = -3
Query: 144 SIHLAPSNFTLRFDAGVALQKFSAFTLQKTKRTADE 37
+IH+APSN+ LRFDA + +QKFS TLQK KRTADE
Sbjct: 770 AIHMAPSNYMLRFDAAITMQKFSTATLQKQKRTADE 805
Score = 47.8 bits (112), Expect(4) = 3e-41
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = -1
Query: 662 VLVQHPANLYAANGAAVVLAEKGQFDVSKDIFMQV 558
VL Q N+YAANG +V +EKG FD++KDIF QV
Sbjct: 661 VLTQKSNNMYAANGLGIVFSEKGMFDIAKDIFTQV 695