BLASTX nr result
ID: Coptis25_contig00016061
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00016061
(1274 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI21205.3| unnamed protein product [Vitis vinifera] 194 4e-53
ref|XP_003633772.1| PREDICTED: protein RIK-like [Vitis vinifera] 191 4e-52
ref|NP_001105836.1| protein RIK [Zea mays] gi|122211828|sp|Q32SG... 179 5e-51
gb|ACN35254.1| unknown [Zea mays] gi|414865516|tpg|DAA44073.1| T... 179 9e-51
ref|XP_003558500.1| PREDICTED: protein RIK-like [Brachypodium di... 175 1e-50
>emb|CBI21205.3| unnamed protein product [Vitis vinifera]
Length = 659
Score = 194 bits (493), Expect(2) = 4e-53
Identities = 118/217 (54%), Positives = 134/217 (61%), Gaps = 49/217 (22%)
Frame = -1
Query: 1193 RRKKKTMTENS--RPKVSEELTATTTSAKQRKRRKWDEPAEYFISA-------------- 1062
+RK+ M E+S RP S+E +A +QRK+RKWD+PAE +SA
Sbjct: 41 QRKQNNMIEDSCPRPASSDEASAI----RQRKKRKWDQPAESLVSAGVALPGVLPLGNVG 96
Query: 1061 ----------AP----------------------FTANIPQKINL-KIQDELIAREIVIN 981
AP + I QK+N KIQDELIAREI+IN
Sbjct: 97 PLVGIPLAGVAPPSSALLTNVTIPPVFQTSSIQQHASAIVQKLNQPKIQDELIAREIIIN 156
Query: 980 DAESTVRYKLTKRQTQDEIQRCTGAVVITRGKYRPPNVLPDSEKPLYLHISAGSHLKETA 801
DAESTVRYKLTKRQ Q+EIQ+CTGAVVITRGKYRPPN LPD EKPLYLHISAG+HLK+TA
Sbjct: 157 DAESTVRYKLTKRQMQEEIQKCTGAVVITRGKYRPPNALPDGEKPLYLHISAGAHLKDTA 216
Query: 800 ERIIAVDHAAAMVEEMLKQGQNSHPTSIPFHSTTNVG 690
ERI AVD AAAMVEEMLKQGQNS H N G
Sbjct: 217 ERIKAVDRAAAMVEEMLKQGQNSESVPSNSHLAGNTG 253
Score = 41.6 bits (96), Expect(2) = 4e-53
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = -2
Query: 619 NACVFLGFDTDPSLNIGSRIRGPNVRF 539
+ CVFLGF+ DPSLNI + IRGPN ++
Sbjct: 259 STCVFLGFEADPSLNIAACIRGPNDQY 285
Score = 144 bits (362), Expect = 6e-32
Identities = 76/95 (80%), Positives = 79/95 (83%)
Frame = -3
Query: 297 DQYINHIMNETGATVILRGRGSGNLESLDCEDFQQPLHLFLSCNNPKSVEDAKLLAENLL 118
DQYINHIMNETGATV LRGRGSGN ES + E QQPLHLFLS NN K +EDAKLLAENLL
Sbjct: 283 DQYINHIMNETGATVSLRGRGSGNSESPNGEG-QQPLHLFLSSNNLKGLEDAKLLAENLL 341
Query: 117 DTIAAECGASRVSSSKVYKAVPPPPQLMAGVHSSG 13
DTI AECGASR SS KVY AVPPP QL+ GV SSG
Sbjct: 342 DTICAECGASRASSCKVYGAVPPPQQLLVGVQSSG 376
>ref|XP_003633772.1| PREDICTED: protein RIK-like [Vitis vinifera]
Length = 566
Score = 191 bits (485), Expect(2) = 4e-52
Identities = 115/203 (56%), Positives = 131/203 (64%), Gaps = 49/203 (24%)
Frame = -1
Query: 1193 RRKKKTMTENS--RPKVSEELTATTTSAKQRKRRKWDEPAEYFISA-------------- 1062
+RK+ M E+S RP S+E +A +QRK+RKWD+PAE +SA
Sbjct: 87 QRKQNNMIEDSCPRPASSDEASAI----RQRKKRKWDQPAESLVSAGVALPGVLPLGNVG 142
Query: 1061 ----------AP----------------------FTANIPQKINL-KIQDELIAREIVIN 981
AP + I QK+N KIQDELIAREI+IN
Sbjct: 143 PLVGIPLAGVAPPSSALLTNVTIPPVFQTSSIQQHASAIVQKLNQPKIQDELIAREIIIN 202
Query: 980 DAESTVRYKLTKRQTQDEIQRCTGAVVITRGKYRPPNVLPDSEKPLYLHISAGSHLKETA 801
DAESTVRYKLTKRQ Q+EIQ+CTGAVVITRGKYRPPN LPD EKPLYLHISAG+HLK+TA
Sbjct: 203 DAESTVRYKLTKRQMQEEIQKCTGAVVITRGKYRPPNALPDGEKPLYLHISAGAHLKDTA 262
Query: 800 ERIIAVDHAAAMVEEMLKQGQNS 732
ERI AVD AAAMVEEMLKQGQNS
Sbjct: 263 ERIKAVDRAAAMVEEMLKQGQNS 285
Score = 41.6 bits (96), Expect(2) = 4e-52
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = -2
Query: 619 NACVFLGFDTDPSLNIGSRIRGPNVRF 539
+ CVFLGF+ DPSLNI + IRGPN ++
Sbjct: 293 STCVFLGFEADPSLNIAACIRGPNDQY 319
Score = 144 bits (362), Expect = 6e-32
Identities = 76/95 (80%), Positives = 79/95 (83%)
Frame = -3
Query: 297 DQYINHIMNETGATVILRGRGSGNLESLDCEDFQQPLHLFLSCNNPKSVEDAKLLAENLL 118
DQYINHIMNETGATV LRGRGSGN ES + E QQPLHLFLS NN K +EDAKLLAENLL
Sbjct: 317 DQYINHIMNETGATVSLRGRGSGNSESPNGEG-QQPLHLFLSSNNLKGLEDAKLLAENLL 375
Query: 117 DTIAAECGASRVSSSKVYKAVPPPPQLMAGVHSSG 13
DTI AECGASR SS KVY AVPPP QL+ GV SSG
Sbjct: 376 DTICAECGASRASSCKVYGAVPPPQQLLVGVQSSG 410
>ref|NP_001105836.1| protein RIK [Zea mays] gi|122211828|sp|Q32SG5.1|RIK_MAIZE RecName:
Full=Protein RIK; AltName: Full=Rough sheath
2-interacting KH domain protein; Short=RS2-interacting KH
domain protein gi|62997479|gb|AAY24682.1| ROUGH
SHEATH2-interacting KH-domain protein [Zea mays]
Length = 616
Score = 179 bits (455), Expect(2) = 5e-51
Identities = 102/212 (48%), Positives = 126/212 (59%), Gaps = 53/212 (25%)
Frame = -1
Query: 1175 MTENSRPKVSEELTATTTSAKQRKRRKWDEPAEYFISAA--------------------- 1059
MTE+ KV++E A+ + +RK+RKWD+PAE +SAA
Sbjct: 1 MTEDRAHKVADEPAASGRQSPERKKRKWDQPAEDLVSAAVTAAAVSGMPVMNFGALPGVV 60
Query: 1058 ----------------PFTANIPQKI----------------NLKIQDELIAREIVINDA 975
P ++P I KI DE+IAREIVINDA
Sbjct: 61 LPGVTAYGAATLPSVVPVPYSLPPHIAPSVLQNAAAAAQKLSQAKIPDEVIAREIVINDA 120
Query: 974 ESTVRYKLTKRQTQDEIQRCTGAVVITRGKYRPPNVLPDSEKPLYLHISAGSHLKETAER 795
+ +VRYKLTKRQTQ+EIQ+CT V+ITRGKY PPN+LPD EKPLYLHISAGS LK+TAER
Sbjct: 121 DPSVRYKLTKRQTQEEIQKCTNTVIITRGKYHPPNLLPDGEKPLYLHISAGSQLKDTAER 180
Query: 794 IIAVDHAAAMVEEMLKQGQNSHPTSIPFHSTT 699
I AVD AA+M+EE+LKQG S S+PF S+T
Sbjct: 181 IKAVDRAASMIEEILKQGTTSESISVPFSSST 212
Score = 49.3 bits (116), Expect(2) = 5e-51
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = -2
Query: 637 QVSHPFNACVFLGFDTDPSLNIGSRIRGPNVRF 539
Q PF+A VFLGFD DPSLNI +RIRGPN ++
Sbjct: 214 QAVRPFSASVFLGFDADPSLNITARIRGPNDQY 246
Score = 127 bits (320), Expect = 5e-27
Identities = 65/95 (68%), Positives = 77/95 (81%)
Frame = -3
Query: 297 DQYINHIMNETGATVILRGRGSGNLESLDCEDFQQPLHLFLSCNNPKSVEDAKLLAENLL 118
DQYINHIM ETG TV+LRG+ S NL S E QQPLHL+L+ + K++E AK+LAENLL
Sbjct: 244 DQYINHIMKETGVTVVLRGKDSENLGSCHSEASQQPLHLYLTSMHLKNLEAAKVLAENLL 303
Query: 117 DTIAAECGASRVSSSKVYKAVPPPPQLMAGVHSSG 13
DT+AAE GASR+SSSKVY AVPPP QL+AGV +SG
Sbjct: 304 DTVAAEFGASRISSSKVYGAVPPPQQLLAGVDTSG 338
>gb|ACN35254.1| unknown [Zea mays] gi|414865516|tpg|DAA44073.1| TPA: putative ROUGH
SHEATH2-interacting KH-domain (RIK) protein [Zea mays]
Length = 657
Score = 179 bits (453), Expect(2) = 9e-51
Identities = 102/212 (48%), Positives = 125/212 (58%), Gaps = 53/212 (25%)
Frame = -1
Query: 1175 MTENSRPKVSEELTATTTSAKQRKRRKWDEPAEYFISAA--------------------- 1059
MTE+ KV++E A+ +RK+RKWD+PAE +SAA
Sbjct: 1 MTEDRAHKVADEPAASGRQRPERKKRKWDQPAEDLVSAAVTAAAVSGMPVMNFGALPGVV 60
Query: 1058 ----------------PFTANIPQKI----------------NLKIQDELIAREIVINDA 975
P ++P I KI DE+IAREIVINDA
Sbjct: 61 LPGVTAYGAATLPSVVPVPYSLPPHIAPSVLQNAAAAAQKLSQAKIPDEVIAREIVINDA 120
Query: 974 ESTVRYKLTKRQTQDEIQRCTGAVVITRGKYRPPNVLPDSEKPLYLHISAGSHLKETAER 795
+ +VRYKLTKRQTQ+EIQ+CT V+ITRGKY PPN+LPD EKPLYLHISAGS LK+TAER
Sbjct: 121 DPSVRYKLTKRQTQEEIQKCTNTVIITRGKYHPPNLLPDGEKPLYLHISAGSQLKDTAER 180
Query: 794 IIAVDHAAAMVEEMLKQGQNSHPTSIPFHSTT 699
I AVD AA+M+EE+LKQG S S+PF S+T
Sbjct: 181 IKAVDRAASMIEEILKQGTTSESISVPFSSST 212
Score = 49.3 bits (116), Expect(2) = 9e-51
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = -2
Query: 637 QVSHPFNACVFLGFDTDPSLNIGSRIRGPNVRF 539
Q PF+A VFLGFD DPSLNI +RIRGPN ++
Sbjct: 214 QAVRPFSASVFLGFDADPSLNITARIRGPNDQY 246
Score = 127 bits (320), Expect = 5e-27
Identities = 65/95 (68%), Positives = 77/95 (81%)
Frame = -3
Query: 297 DQYINHIMNETGATVILRGRGSGNLESLDCEDFQQPLHLFLSCNNPKSVEDAKLLAENLL 118
DQYINHIM ETG TV+LRG+ S NL S E QQPLHL+L+ + K++E AK+LAENLL
Sbjct: 244 DQYINHIMKETGVTVVLRGKDSENLGSCHSEASQQPLHLYLTSMHLKNLEAAKVLAENLL 303
Query: 117 DTIAAECGASRVSSSKVYKAVPPPPQLMAGVHSSG 13
DT+AAE GASR+SSSKVY AVPPP QL+AGV +SG
Sbjct: 304 DTVAAEFGASRISSSKVYGAVPPPQQLLAGVDTSG 338
>ref|XP_003558500.1| PREDICTED: protein RIK-like [Brachypodium distachyon]
Length = 661
Score = 175 bits (444), Expect(2) = 1e-50
Identities = 109/210 (51%), Positives = 122/210 (58%), Gaps = 53/210 (25%)
Frame = -1
Query: 1175 MTENSRPKVSEELTATTTSAKQRKRRKWDEPAEYFISAA--------------------- 1059
MTE P+ S E TA T KQRK+RKWD+PAE +SAA
Sbjct: 1 MTEEGTPRASGEPTAAT---KQRKKRKWDQPAEDIVSAAAEAAAVAGLPVLNFGALSGVQ 57
Query: 1058 ----------PFTANIP---------------------QKIN-LKIQDELIAREIVINDA 975
P IP QK++ KI DELIAREIVINDA
Sbjct: 58 FPGITTYPAAPLPNAIPAPYALPPQLTPSVLQSAAAAVQKLSQAKIPDELIAREIVINDA 117
Query: 974 ESTVRYKLTKRQTQDEIQRCTGAVVITRGKYRPPNVLPDSEKPLYLHISAGSHLKETAER 795
+ +VRYKLTKRQTQDEIQRCT V+ITRGKY PPN PD EKPLYLHISAGS LK+TAER
Sbjct: 118 DPSVRYKLTKRQTQDEIQRCTCTVIITRGKYHPPNGQPDGEKPLYLHISAGSQLKDTAER 177
Query: 794 IIAVDHAAAMVEEMLKQGQNSHPTSIPFHS 705
I AVD AA+M+EE+LKQGQ TS F S
Sbjct: 178 IKAVDRAASMIEEILKQGQMPETTSTHFPS 207
Score = 52.4 bits (124), Expect(2) = 1e-50
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = -2
Query: 637 QVSHPFNACVFLGFDTDPSLNIGSRIRGPNVRF 539
Q HPF+A +FLGFD DPSLN+ +RIRGPN ++
Sbjct: 213 QAVHPFSASIFLGFDADPSLNVAARIRGPNDQY 245
Score = 133 bits (334), Expect = 1e-28
Identities = 67/94 (71%), Positives = 77/94 (81%)
Frame = -3
Query: 297 DQYINHIMNETGATVILRGRGSGNLESLDCEDFQQPLHLFLSCNNPKSVEDAKLLAENLL 118
DQYINHIMNETG TV LRG+GSGN+ E QQPLH++LS + KS+E AK+LAENLL
Sbjct: 243 DQYINHIMNETGVTVSLRGKGSGNMGGCHAEASQQPLHMYLSSVHLKSLEAAKVLAENLL 302
Query: 117 DTIAAECGASRVSSSKVYKAVPPPPQLMAGVHSS 16
DTIAAE GASR+SSSKVY AVPPP QL+ GVH+S
Sbjct: 303 DTIAAEFGASRISSSKVYGAVPPPQQLLTGVHTS 336