BLASTX nr result

ID: Coptis25_contig00016060 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00016060
         (221 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004149111.1| PREDICTED: membrin-11-like [Cucumis sativus]       66   3e-09
ref|XP_002275569.1| PREDICTED: membrin-11 [Vitis vinifera] gi|29...    66   3e-09
ref|XP_002319183.1| predicted protein [Populus trichocarpa] gi|1...    59   3e-07
ref|XP_002525701.1| membrin, putative [Ricinus communis] gi|2235...    59   4e-07
ref|XP_003617337.1| Golgi SNAP receptor complex member [Medicago...    56   4e-06

>ref|XP_004149111.1| PREDICTED: membrin-11-like [Cucumis sativus]
          Length = 228

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 35/63 (55%), Positives = 47/63 (74%), Gaps = 7/63 (11%)
 Frame = +3

Query: 54  TLSEIYKNSQRLKIRVRSGIEKLEELEF-------TPELSYSINKDIDQIRSLSADMERL 212
           TLSEIY++++RL +R R G+EKLE LE+       +PELS+SI KDI QI+SL  +M+RL
Sbjct: 11  TLSEIYQSAKRLLLRTRDGLEKLERLEYSAASGMDSPELSFSIKKDITQIQSLCVEMDRL 70

Query: 213 SRS 221
            RS
Sbjct: 71  WRS 73


>ref|XP_002275569.1| PREDICTED: membrin-11 [Vitis vinifera] gi|296085896|emb|CBI31220.3|
           unnamed protein product [Vitis vinifera]
          Length = 224

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 33/64 (51%), Positives = 47/64 (73%), Gaps = 7/64 (10%)
 Frame = +3

Query: 51  TTLSEIYKNSQRLKIRVRSGIEKLEELEF-------TPELSYSINKDIDQIRSLSADMER 209
           TT SEIY+NS++L +R R G+E+LE LEF       +PEL++++ KDI QI+SL  +M+R
Sbjct: 6   TTFSEIYQNSKKLLLRTRDGLERLERLEFSSSNPVDSPELAFAVKKDISQIQSLCVEMDR 65

Query: 210 LSRS 221
           L RS
Sbjct: 66  LWRS 69


>ref|XP_002319183.1| predicted protein [Populus trichocarpa] gi|118486425|gb|ABK95052.1|
           unknown [Populus trichocarpa]
           gi|222857559|gb|EEE95106.1| predicted protein [Populus
           trichocarpa]
          Length = 225

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 32/64 (50%), Positives = 45/64 (70%), Gaps = 8/64 (12%)
 Frame = +3

Query: 54  TLSEIYKNSQRLKIRVRSGIEKLEELEFT--------PELSYSINKDIDQIRSLSADMER 209
           TLSEIY+++++L +R + GIE+LE LE +        PELS+ + KDI Q+ SL ADM+R
Sbjct: 7   TLSEIYQSAKKLLMRAQDGIERLERLENSTSSGGLDSPELSFVVKKDISQVLSLCADMDR 66

Query: 210 LSRS 221
           L RS
Sbjct: 67  LWRS 70


>ref|XP_002525701.1| membrin, putative [Ricinus communis] gi|223535001|gb|EEF36684.1|
           membrin, putative [Ricinus communis]
          Length = 229

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 31/64 (48%), Positives = 46/64 (71%), Gaps = 8/64 (12%)
 Frame = +3

Query: 54  TLSEIYKNSQRLKIRVRSGIEKLEELEFT--------PELSYSINKDIDQIRSLSADMER 209
           TLSEI+++S++  +R R GIE+LE LE +        PELS+++ KDI QI+SL A+++R
Sbjct: 11  TLSEIFQSSKKALLRARDGIERLERLENSTSNGGLDSPELSFAVKKDISQIQSLCAELDR 70

Query: 210 LSRS 221
           L RS
Sbjct: 71  LWRS 74


>ref|XP_003617337.1| Golgi SNAP receptor complex member [Medicago truncatula]
           gi|355518672|gb|AET00296.1| Golgi SNAP receptor complex
           member [Medicago truncatula]
          Length = 222

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 27/61 (44%), Positives = 45/61 (73%), Gaps = 5/61 (8%)
 Frame = +3

Query: 54  TLSEIYKNSQRLKIRVRSGIEKLEELEF-----TPELSYSINKDIDQIRSLSADMERLSR 218
           T SEI++ +++L +R R G+E+LE LE+     + +LS++++KDI QI+SL  +M +LSR
Sbjct: 7   TFSEIHQTARKLLLRTRDGLERLERLEYSNSSSSSDLSFAVSKDITQIQSLCVEMSQLSR 66

Query: 219 S 221
           S
Sbjct: 67  S 67


Top