BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00016052
         (1460 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263213.1| PREDICTED: probable replication factor C sub...   577   e-162
gb|AFK37872.1| unknown [Lotus japonicus]                              570   e-160
ref|XP_002325862.1| predicted protein [Populus trichocarpa] gi|2...   568   e-159
ref|NP_001241064.1| uncharacterized protein LOC100818329 [Glycin...   562   e-158
ref|XP_003524588.1| PREDICTED: replication factor C subunit 3-li...   560   e-157

>ref|XP_002263213.1| PREDICTED: probable replication factor C subunit 3 [Vitis vinifera]
            gi|296089274|emb|CBI39046.3| unnamed protein product
            [Vitis vinifera]
          Length = 354

 Score =  577 bits (1488), Expect = e-162
 Identities = 283/354 (79%), Positives = 308/354 (87%)
 Frame = -1

Query: 1340 MLWVDKYRPKSLDKMIVHEDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIVAVLRQMFG 1161
            MLWVDKYRPK+LD +IVH+DVAQNLKKLVTEQDCPHLLFYGP GSGKKTLI+A+LRQMFG
Sbjct: 1    MLWVDKYRPKTLDNLIVHDDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAILRQMFG 60

Query: 1160 ASAEKVKIENKTWKVDAGXXXXXXXXXXXXXTHHVEMNPSDAGFQDRYVVQEIIKEMARN 981
             SA+KVK+ENKTWK+DAG             THH+E+NP DAGFQDRY+VQEIIKEMA+N
Sbjct: 61   PSADKVKVENKTWKIDAGTRTIDLELTTLSSTHHMELNPGDAGFQDRYIVQEIIKEMAKN 120

Query: 980  RPIDAKGKKGYKVLVLNEVDKLSREAQNSLRRTMEKYSASCRLILCCNSSSKVMEAVRSR 801
            RPID KGKKG++VLVLNEVD+LSREAQ+SLRRTMEKYSASCRLILCCNSSSKV EAVRSR
Sbjct: 121  RPIDTKGKKGFRVLVLNEVDRLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180

Query: 800  CMNIRINAPTEEQIVTVLEFIGKKESLQLPPGFASRIAAQSNRSLRRAVLLFETCRVQQY 621
            C+NIRINAPTEEQI  VLEFI KKE LQLP GFA+RIA +SNRSLRRA+L FETCRVQQY
Sbjct: 181  CLNIRINAPTEEQITKVLEFIAKKEGLQLPSGFATRIAEKSNRSLRRAILSFETCRVQQY 240

Query: 620  PFTNNQAIPPMDWEQYVSEIATDIMQEQSPKRLFMVRGKLYELLINCIPPXXXXXXXXXX 441
            PFTNNQA+PPMDWE+YVSEIA+DIM+EQSPKRLF VRGKLYELLINCIPP          
Sbjct: 241  PFTNNQAMPPMDWEEYVSEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLLE 300

Query: 440  XXXXXXXXXKHEICHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG 279
                     KHE+CHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG
Sbjct: 301  LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG 354


>gb|AFK37872.1| unknown [Lotus japonicus]
          Length = 354

 Score =  570 bits (1469), Expect = e-160
 Identities = 275/354 (77%), Positives = 309/354 (87%)
 Frame = -1

Query: 1340 MLWVDKYRPKSLDKMIVHEDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIVAVLRQMFG 1161
            MLWVDKYRPK+LD+++VH+DVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLI+A+LRQMFG
Sbjct: 1    MLWVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFG 60

Query: 1160 ASAEKVKIENKTWKVDAGXXXXXXXXXXXXXTHHVEMNPSDAGFQDRYVVQEIIKEMARN 981
             +AEKVK+EN+TWKVDAG              HH+EM+PSDAGFQDRYVVQEIIKEMA+N
Sbjct: 61   TAAEKVKVENRTWKVDAGSRSIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKN 120

Query: 980  RPIDAKGKKGYKVLVLNEVDKLSREAQNSLRRTMEKYSASCRLILCCNSSSKVMEAVRSR 801
            RPID KGKKG+KVLVLN+VDKLSREAQ+SLRRTMEKYSA CRLILCCNSSS+V EA+RSR
Sbjct: 121  RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180

Query: 800  CMNIRINAPTEEQIVTVLEFIGKKESLQLPPGFASRIAAQSNRSLRRAVLLFETCRVQQY 621
            C+NIRINAP+EEQIV V+EFIGKKE LQ+P GFA+RIA +SNR+LRRA+L FETCRVQQY
Sbjct: 181  CLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAILSFETCRVQQY 240

Query: 620  PFTNNQAIPPMDWEQYVSEIATDIMQEQSPKRLFMVRGKLYELLINCIPPXXXXXXXXXX 441
            PFTN Q IPPMDWE+Y+SEIA+DIM+EQ+PKRLF VRGKLYELLINCIPP          
Sbjct: 241  PFTNRQTIPPMDWEEYISEIASDIMKEQNPKRLFQVRGKLYELLINCIPPEMILKRLLFE 300

Query: 440  XXXXXXXXXKHEICHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG 279
                     KHE+CHWAAYYEHRMRLGQKAIFHIEAFVAKFMS+YK+FLIATFG
Sbjct: 301  LLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG 354


>ref|XP_002325862.1| predicted protein [Populus trichocarpa] gi|222862737|gb|EEF00244.1|
            predicted protein [Populus trichocarpa]
          Length = 353

 Score =  568 bits (1465), Expect = e-159
 Identities = 278/354 (78%), Positives = 311/354 (87%)
 Frame = -1

Query: 1340 MLWVDKYRPKSLDKMIVHEDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIVAVLRQMFG 1161
            MLWVDKYRPK+LD++IVH+++A+NLKKLVTEQDCPHLLFYGPSGSGKKTLI+A+LRQ+FG
Sbjct: 1    MLWVDKYRPKTLDQVIVHQEIAENLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60

Query: 1160 ASAEKVKIENKTWKVDAGXXXXXXXXXXXXXTHHVEMNPSDAGFQDRYVVQEIIKEMARN 981
             SAEKVK+EN+TWK+DAG             T+HVE++PSD GFQDRY+VQEIIKEMA+N
Sbjct: 61   TSAEKVKVENRTWKIDAGSRTIDLELTTLSSTNHVELSPSDVGFQDRYIVQEIIKEMAKN 120

Query: 980  RPIDAKGKKGYKVLVLNEVDKLSREAQNSLRRTMEKYSASCRLILCCNSSSKVMEAVRSR 801
            RPID KGKKGYKVLVLNEVDKLSREAQ+SLRRTMEKYSASCRLILCCNSSSKV EA+RSR
Sbjct: 121  RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR 180

Query: 800  CMNIRINAPTEEQIVTVLEFIGKKESLQLPPGFASRIAAQSNRSLRRAVLLFETCRVQQY 621
            C+N+RINAP EEQIV VLEFIGKKE LQLPPGFA+RIA +SNRSLRRA+L FETCRVQQY
Sbjct: 181  CLNVRINAPKEEQIVKVLEFIGKKEGLQLPPGFAARIADKSNRSLRRAILSFETCRVQQY 240

Query: 620  PFTNNQAIPPMDWEQYVSEIATDIMQEQSPKRLFMVRGKLYELLINCIPPXXXXXXXXXX 441
            PF++NQAIPPMDWE+YVSEI +DIM+EQSPKRLF VRGKLYELLINCIPP          
Sbjct: 241  PFSSNQAIPPMDWEEYVSEICSDIMREQSPKRLFQVRGKLYELLINCIPP-EIILKLLSE 299

Query: 440  XXXXXXXXXKHEICHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG 279
                     KHE+CHWAAYYEHRMR+GQKAIFH+EAFVAKFMSIYKAFLIATFG
Sbjct: 300  LLKKLDEELKHEVCHWAAYYEHRMRMGQKAIFHLEAFVAKFMSIYKAFLIATFG 353


>ref|NP_001241064.1| uncharacterized protein LOC100818329 [Glycine max]
            gi|255645652|gb|ACU23320.1| unknown [Glycine max]
          Length = 354

 Score =  562 bits (1449), Expect = e-158
 Identities = 270/354 (76%), Positives = 307/354 (86%)
 Frame = -1

Query: 1340 MLWVDKYRPKSLDKMIVHEDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIVAVLRQMFG 1161
            MLWVDKYRPK+LD+++VH D+A+NLKKLVTEQDCPHLLFYGPSGSGKKTLI+A+LRQMFG
Sbjct: 1    MLWVDKYRPKTLDQVMVHTDIARNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFG 60

Query: 1160 ASAEKVKIENKTWKVDAGXXXXXXXXXXXXXTHHVEMNPSDAGFQDRYVVQEIIKEMARN 981
              AEKVK++N+TWKVDAG              +H+EM+PSDAGFQDRY+VQE+IKEMA+N
Sbjct: 61   PGAEKVKVDNRTWKVDAGSRSLDLELTTLSSANHIEMSPSDAGFQDRYIVQEVIKEMAKN 120

Query: 980  RPIDAKGKKGYKVLVLNEVDKLSREAQNSLRRTMEKYSASCRLILCCNSSSKVMEAVRSR 801
            RPID KGKKG+KVLVLN+VDKLSREAQ+SLRRTMEKYSA CRLILCCNSSS+V EA+RSR
Sbjct: 121  RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180

Query: 800  CMNIRINAPTEEQIVTVLEFIGKKESLQLPPGFASRIAAQSNRSLRRAVLLFETCRVQQY 621
            C+N+RINAP+EEQIV VLEFIGKKE LQLPPGFA+RI  +SNR+LRRA+L FETCRVQQY
Sbjct: 181  CLNVRINAPSEEQIVEVLEFIGKKEGLQLPPGFAARIVEKSNRNLRRAILSFETCRVQQY 240

Query: 620  PFTNNQAIPPMDWEQYVSEIATDIMQEQSPKRLFMVRGKLYELLINCIPPXXXXXXXXXX 441
            PFTN Q IPPMDWE+Y+SEIA+DIM+EQSPKRLF VRGKLYELLINCIPP          
Sbjct: 241  PFTNKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYE 300

Query: 440  XXXXXXXXXKHEICHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG 279
                     KHE+CHWAAYYE+RMRLGQKAIFHIEAFVAKFMSIYK+FLI+TFG
Sbjct: 301  LLRKLDAELKHEVCHWAAYYEYRMRLGQKAIFHIEAFVAKFMSIYKSFLISTFG 354


>ref|XP_003524588.1| PREDICTED: replication factor C subunit 3-like [Glycine max]
          Length = 354

 Score =  560 bits (1444), Expect = e-157
 Identities = 271/354 (76%), Positives = 306/354 (86%)
 Frame = -1

Query: 1340 MLWVDKYRPKSLDKMIVHEDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIVAVLRQMFG 1161
            MLWVDKYRPK+LD+++VH D+A NLKKLVTEQD PHLLFYGPSGSGKKTLI+A+LRQMFG
Sbjct: 1    MLWVDKYRPKTLDQVMVHTDIAHNLKKLVTEQDSPHLLFYGPSGSGKKTLIMALLRQMFG 60

Query: 1160 ASAEKVKIENKTWKVDAGXXXXXXXXXXXXXTHHVEMNPSDAGFQDRYVVQEIIKEMARN 981
              AEKVK+EN+TWK+DAG              +H+EM+PSDAGFQDRY+VQE+IKEMA+N
Sbjct: 61   PGAEKVKVENRTWKIDAGSRSLDLELTTLSSANHIEMSPSDAGFQDRYIVQEVIKEMAKN 120

Query: 980  RPIDAKGKKGYKVLVLNEVDKLSREAQNSLRRTMEKYSASCRLILCCNSSSKVMEAVRSR 801
            RPID KGKKG+KVLVLN+VDKLSREAQ+SLRRTMEKYSA CRLILCCNSSS+V EA+RSR
Sbjct: 121  RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR 180

Query: 800  CMNIRINAPTEEQIVTVLEFIGKKESLQLPPGFASRIAAQSNRSLRRAVLLFETCRVQQY 621
            C+N+RINAP+EEQIV VLEFIGKKE LQLPPGFA+RIA +SNR+LRRA+L FETCRV QY
Sbjct: 181  CLNVRINAPSEEQIVQVLEFIGKKEGLQLPPGFAARIAEKSNRNLRRAILSFETCRVLQY 240

Query: 620  PFTNNQAIPPMDWEQYVSEIATDIMQEQSPKRLFMVRGKLYELLINCIPPXXXXXXXXXX 441
            PFTN QAIPPMDWE+Y+SEIA+DIM+EQSPKRLF VRGKLYELLINCIPP          
Sbjct: 241  PFTNKQAIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYE 300

Query: 440  XXXXXXXXXKHEICHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG 279
                     KHE+CHWAAYYE+RMRLGQKAIFHIEAFVAKFMSIYK+FLIATFG
Sbjct: 301  LLRKLDAELKHEVCHWAAYYEYRMRLGQKAIFHIEAFVAKFMSIYKSFLIATFG 354