BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00016022
         (1333 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containi...   595   e-168
ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containi...   593   e-167
emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]   593   e-167
ref|XP_002523294.1| pentatricopeptide repeat-containing protein,...   585   e-165
ref|NP_197146.1| pentatricopeptide repeat-containing protein [Ar...   560   e-157

>ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
            mitochondrial-like [Cucumis sativus]
            gi|449492939|ref|XP_004159147.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g16420,
            mitochondrial-like [Cucumis sativus]
          Length = 535

 Score =  595 bits (1534), Expect = e-168
 Identities = 278/380 (73%), Positives = 331/380 (87%)
 Frame = -3

Query: 1142 PPIKPWPIRLYPKRLVLMIKRQQNVDLALQIFTYSGHFHPGFSHNYDTYHAMIEKLARVR 963
            PPIKPWP RL+P RLV MI+RQQN+DLALQIF Y+G +HP F+HNYDTYHA+I +L+R R
Sbjct: 41   PPIKPWPQRLFPNRLVAMIRRQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRAR 100

Query: 962  AFNEMETLMLQLKKSQLKCSENLFVMVIRNYGIASRVKFAIRTFLRIKEFGIERSVRSLN 783
            AF  +E+L+L+L+ S + CSE+LF+ VIR+YG+ASR K A++TFLRI+ FG+ RSVRSLN
Sbjct: 101  AFEPVESLLLELQDSGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLN 160

Query: 782  TLLNALVQNKRYDLVHLLFKNCNNKFGIVPNVFTCNILAKALCKKNDVEGACKVLDEIPG 603
            TLLNALVQN R+  VHLLFK   +KFG+VPNVFTCNIL KALCKKNDVEGA KV DE+P 
Sbjct: 161  TLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMPS 220

Query: 602  MGIVANLVTYTTILGGYCSRGDLVEAKKVFDEILYKGWIPDATTYTVLMDGYLKQGRFIE 423
            MGIV N+VTYTTILGGY SRGD++ AK+VF E+   GW+PDATTYT+LMDGY+KQGRF +
Sbjct: 221  MGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDATTYTILMDGYVKQGRFTD 280

Query: 422  AVKVMDDMEENGVEPNDITFGVMIEGLCKEKKSGEALNLLGDMIEKEYVPNSGLCCKVID 243
            AVKVMD+MEENGVEPNDIT+GV+I G CKE+KSGEALNLL DM+EK+Y+PNS LCCKVID
Sbjct: 281  AVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKKYIPNSALCCKVID 340

Query: 242  VLCEDGKVEDACSMWRKLLKTNCTPDNAISSTLIYWLCKEGNIWEARKLFNEFGKGSIPS 63
            VLC +G+V++AC MW KLLK NCTPDNAI+STLI+WLCKEGNIWEARKLFNEF +G+I S
Sbjct: 341  VLCGEGRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCKEGNIWEARKLFNEFERGTISS 400

Query: 62   VITYNTLIEGMCERGELQEA 3
            ++TYNTLI GMCE GEL EA
Sbjct: 401  LLTYNTLIAGMCEMGELCEA 420



 Score = 97.8 bits (242), Expect = 5e-18
 Identities = 53/148 (35%), Positives = 90/148 (60%)
 Frame = -3

Query: 734 LLFKNCNNKFGIVPNVFTCNILAKALCKKNDVEGACKVLDEIPGMGIVANLVTYTTILGG 555
           LL KNC       P+    + L   LCK+ ++  A K+ +E    G +++L+TY T++ G
Sbjct: 358 LLKKNCT------PDNAITSTLIHWLCKEGNIWEARKLFNEFE-RGTISSLLTYNTLIAG 410

Query: 554 YCSRGDLVEAKKVFDEILYKGWIPDATTYTVLMDGYLKQGRFIEAVKVMDDMEENGVEPN 375
            C  G+L EA +++D++L KG +P+  TY +L+ G+LK G+  E +KV+++M + G   N
Sbjct: 411 MCEMGELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLLN 470

Query: 374 DITFGVMIEGLCKEKKSGEALNLLGDMI 291
           + T+ +++EGL K  K  E LN+L  +I
Sbjct: 471 ESTYLILVEGLLKLGKREELLNILSMII 498



 Score = 90.1 bits (222), Expect = 1e-15
 Identities = 57/239 (23%), Positives = 119/239 (49%), Gaps = 1/239 (0%)
 Frame = -3

Query: 893 FVMVIRNYGIASRVKFAIRTFLRIKEFGIERSVRSLNTL-LNALVQNKRYDLVHLLFKNC 717
           + +++  Y    R   A++    ++E G+E +  +   + L    + K  + ++LL    
Sbjct: 265 YTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLNDML 324

Query: 716 NNKFGIVPNVFTCNILAKALCKKNDVEGACKVLDEIPGMGIVANLVTYTTILGGYCSRGD 537
             K+  +PN   C  +   LC +  V+ ACK+ +++       +    +T++   C  G+
Sbjct: 325 EKKY--IPNSALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCKEGN 382

Query: 536 LVEAKKVFDEILYKGWIPDATTYTVLMDGYLKQGRFIEAVKVMDDMEENGVEPNDITFGV 357
           + EA+K+F+E   +G I    TY  L+ G  + G   EA ++ DDM E G  PN+ T+ +
Sbjct: 383 IWEARKLFNEF-ERGTISSLLTYNTLIAGMCEMGELCEAARLWDDMLEKGCVPNEFTYNM 441

Query: 356 MIEGLCKEKKSGEALNLLGDMIEKEYVPNSGLCCKVIDVLCEDGKVEDACSMWRKLLKT 180
           +I+G  K  K+ E + ++ +M++K  + N      +++ L + GK E+  ++   ++ +
Sbjct: 442 LIKGFLKVGKAKEVIKVVEEMLDKGCLLNESTYLILVEGLLKLGKREELLNILSMIISS 500



 Score = 60.5 bits (145), Expect = 1e-06
 Identities = 50/212 (23%), Positives = 94/212 (44%)
 Frame = -3

Query: 1022 GFSHNYDTYHAMIEKLARVRAFNEMETLMLQLKKSQLKCSENLFVMVIRNYGIASRVKFA 843
            G   N  TY  +I    + R   E   L+  + + +   +  L   VI       RVK A
Sbjct: 292  GVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCGEGRVKEA 351

Query: 842  IRTFLRIKEFGIERSVRSLNTLLNALVQNKRYDLVHLLFKNCNNKFGIVPNVFTCNILAK 663
             + + ++ +          +TL++ L +         LF       G + ++ T N L  
Sbjct: 352  CKMWEKLLKKNCTPDNAITSTLIHWLCKEGNIWEARKLFNEFER--GTISSLLTYNTLIA 409

Query: 662  ALCKKNDVEGACKVLDEIPGMGIVANLVTYTTILGGYCSRGDLVEAKKVFDEILYKGWIP 483
             +C+  ++  A ++ D++   G V N  TY  ++ G+   G   E  KV +E+L KG + 
Sbjct: 410  GMCEMGELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLL 469

Query: 482  DATTYTVLMDGYLKQGRFIEAVKVMDDMEENG 387
            + +TY +L++G LK G+  E + ++  +  +G
Sbjct: 470  NESTYLILVEGLLKLGKREELLNILSMIISSG 501


>ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
            mitochondrial [Vitis vinifera]
            gi|296089757|emb|CBI39576.3| unnamed protein product
            [Vitis vinifera]
          Length = 586

 Score =  593 bits (1528), Expect = e-167
 Identities = 281/411 (68%), Positives = 333/411 (81%)
 Frame = -3

Query: 1235 PKAHHLKLNQTISSFFHSINTNLSTSAPVSKPPIKPWPIRLYPKRLVLMIKRQQNVDLAL 1056
            P  HHL    + S+   S             PPIKPWP RL PKR+V MI RQQN+DLAL
Sbjct: 68   PSHHHLAAVDSKSTLLKSYTVT---------PPIKPWPQRLSPKRVVSMISRQQNLDLAL 118

Query: 1055 QIFTYSGHFHPGFSHNYDTYHAMIEKLARVRAFNEMETLMLQLKKSQLKCSENLFVMVIR 876
            QIF ++G FH  F+HNY+TY AMIEKL++ RAF  METL+ QL KSQ+KC ENLF+ VIR
Sbjct: 119  QIFDHAGKFHRNFAHNYETYLAMIEKLSKARAFEPMETLISQLHKSQIKCGENLFITVIR 178

Query: 875  NYGIASRVKFAIRTFLRIKEFGIERSVRSLNTLLNALVQNKRYDLVHLLFKNCNNKFGIV 696
            NYG A R K AIRTFLRI  FG++ SVRS NTLLN LVQNKR+DLVHL+FKNC  KFGIV
Sbjct: 179  NYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIV 238

Query: 695  PNVFTCNILAKALCKKNDVEGACKVLDEIPGMGIVANLVTYTTILGGYCSRGDLVEAKKV 516
            PNVFTCNIL KALCKKND++ A +VL+E+P MG + N+VTYTTILGGY S+GD+V A++V
Sbjct: 239  PNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRV 298

Query: 515  FDEILYKGWIPDATTYTVLMDGYLKQGRFIEAVKVMDDMEENGVEPNDITFGVMIEGLCK 336
            F EIL +GW+PD TTYT+LMDGY K+GRF++AVKVMD+MEEN VEPND+T+GV+IE  CK
Sbjct: 299  FGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCK 358

Query: 335  EKKSGEALNLLGDMIEKEYVPNSGLCCKVIDVLCEDGKVEDACSMWRKLLKTNCTPDNAI 156
            EKKSGE LNLL DM+EK+Y+P+S LCC+VID+LCE+GKVE AC +W+KLLK NCTPDNAI
Sbjct: 359  EKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAI 418

Query: 155  SSTLIYWLCKEGNIWEARKLFNEFGKGSIPSVITYNTLIEGMCERGELQEA 3
            +STLI+WLCKEG +WEARKLF+EF KGSIPS +TYN LI GMCE GEL EA
Sbjct: 419  TSTLIHWLCKEGKVWEARKLFDEFEKGSIPSTLTYNALIAGMCEGGELPEA 469



 Score = 94.0 bits (232), Expect = 8e-17
 Identities = 51/144 (35%), Positives = 82/144 (56%)
 Frame = -3

Query: 734 LLFKNCNNKFGIVPNVFTCNILAKALCKKNDVEGACKVLDEIPGMGIVANLVTYTTILGG 555
           LL KNC       P+    + L   LCK+  V  A K+ DE    G + + +TY  ++ G
Sbjct: 407 LLKKNCT------PDNAITSTLIHWLCKEGKVWEARKLFDEFE-KGSIPSTLTYNALIAG 459

Query: 554 YCSRGDLVEAKKVFDEILYKGWIPDATTYTVLMDGYLKQGRFIEAVKVMDDMEENGVEPN 375
            C  G+L EA +++D ++ KG +P+A TY +L+ G+ K G   E ++VM++M +NG  PN
Sbjct: 460 MCEGGELPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPN 519

Query: 374 DITFGVMIEGLCKEKKSGEALNLL 303
             T+ +++EGL +    GE  N+L
Sbjct: 520 KATYAILLEGLYELGLEGEVTNVL 543



 Score = 92.4 bits (228), Expect = 2e-16
 Identities = 59/235 (25%), Positives = 118/235 (50%), Gaps = 4/235 (1%)
 Frame = -3

Query: 893  FVMVIRNYGIASRVKFAIRTFLRIKEFGIERSVRSLNTLLNALVQNKRY-DLVHLLFKNC 717
            + +++  Y    R   A++    ++E  +E +  +   ++ A  + K+  ++++LL    
Sbjct: 314  YTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDML 373

Query: 716  NNKFGIVPNVFTCNILAKALCKKNDVEGACKVLDEIPGMGIVANLVTYTTILGGYCSRGD 537
              K+  +P+   C  +   LC++  VE AC++  ++       +    +T++   C  G 
Sbjct: 374  EKKY--IPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKEGK 431

Query: 536  LVEAKKVFDEILYKGWIPDATTYTVLMDGYLKQGRFIEAVKVMDDMEENGVEPNDITFGV 357
            + EA+K+FDE   KG IP   TY  L+ G  + G   EA ++ D+M E G  PN  T+ +
Sbjct: 432  VWEARKLFDEF-EKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYNM 490

Query: 356  MIEGLCKEKKSGEALNLLGDMIEKEYVPNSGLCCKVIDVLCE---DGKVEDACSM 201
            +I+G CK   + E + ++ +M++   +PN      +++ L E   +G+V +  SM
Sbjct: 491  LIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYAILLEGLYELGLEGEVTNVLSM 545



 Score = 66.2 bits (160), Expect = 2e-08
 Identities = 47/205 (22%), Positives = 89/205 (43%)
 Frame = -3

Query: 1001 TYHAMIEKLARVRAFNEMETLMLQLKKSQLKCSENLFVMVIRNYGIASRVKFAIRTFLRI 822
            TY  +IE   + +   E+  L+  + + +   S  L   VI       +V+ A   + ++
Sbjct: 348  TYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKL 407

Query: 821  KEFGIERSVRSLNTLLNALVQNKRYDLVHLLFKNCNNKFGIVPNVFTCNILAKALCKKND 642
             +          +TL++ L +  +      LF       G +P+  T N L   +C+  +
Sbjct: 408  LKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEK--GSIPSTLTYNALIAGMCEGGE 465

Query: 641  VEGACKVLDEIPGMGIVANLVTYTTILGGYCSRGDLVEAKKVFDEILYKGWIPDATTYTV 462
            +  A ++ D +   G V N  TY  ++ G+C  G+  E  +V +E+L  G +P+  TY +
Sbjct: 466  LPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYAI 525

Query: 461  LMDGYLKQGRFIEAVKVMDDMEENG 387
            L++G  + G   E   V+      G
Sbjct: 526  LLEGLYELGLEGEVTNVLSMASSRG 550


>emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
          Length = 844

 Score =  593 bits (1528), Expect = e-167
 Identities = 281/411 (68%), Positives = 333/411 (81%)
 Frame = -3

Query: 1235 PKAHHLKLNQTISSFFHSINTNLSTSAPVSKPPIKPWPIRLYPKRLVLMIKRQQNVDLAL 1056
            P  HHL    + S+   S             PPIKPWP RL PKR+V MI RQQN+DLAL
Sbjct: 68   PSHHHLAAVDSKSTLLKSYTVT---------PPIKPWPQRLSPKRVVSMISRQQNLDLAL 118

Query: 1055 QIFTYSGHFHPGFSHNYDTYHAMIEKLARVRAFNEMETLMLQLKKSQLKCSENLFVMVIR 876
            QIF ++G FH  F+HNY+TY AMIEKL++ RAF  METL+ QL KSQ+KC ENLF+ VIR
Sbjct: 119  QIFDHAGKFHRNFAHNYETYLAMIEKLSKARAFEPMETLISQLHKSQIKCGENLFITVIR 178

Query: 875  NYGIASRVKFAIRTFLRIKEFGIERSVRSLNTLLNALVQNKRYDLVHLLFKNCNNKFGIV 696
            NYG A R K AIRTFLRI  FG++ SVRS NTLLN LVQNKR+DLVHL+FKNC  KFGIV
Sbjct: 179  NYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIV 238

Query: 695  PNVFTCNILAKALCKKNDVEGACKVLDEIPGMGIVANLVTYTTILGGYCSRGDLVEAKKV 516
            PNVFTCNIL KALCKKND++ A +VL+E+P MG + N+VTYTTILGGY S+GD+V A++V
Sbjct: 239  PNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRV 298

Query: 515  FDEILYKGWIPDATTYTVLMDGYLKQGRFIEAVKVMDDMEENGVEPNDITFGVMIEGLCK 336
            F EIL +GW+PD TTYT+LMDGY K+GRF++AVKVMD+MEEN VEPND+T+GV+IE  CK
Sbjct: 299  FGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCK 358

Query: 335  EKKSGEALNLLGDMIEKEYVPNSGLCCKVIDVLCEDGKVEDACSMWRKLLKTNCTPDNAI 156
            EKKSGE LNLL DM+EK+Y+P+S LCC+VID+LCE+GKVE AC +W+KLLK NCTPDNAI
Sbjct: 359  EKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAI 418

Query: 155  SSTLIYWLCKEGNIWEARKLFNEFGKGSIPSVITYNTLIEGMCERGELQEA 3
            +STLI+WLCKEG +WEARKLF+EF KGSIPS +TYN LI GMCE GEL EA
Sbjct: 419  TSTLIHWLCKEGKVWEARKLFDEFEKGSIPSTLTYNALIAGMCEGGELPEA 469



 Score = 94.0 bits (232), Expect = 8e-17
 Identities = 51/144 (35%), Positives = 82/144 (56%)
 Frame = -3

Query: 734 LLFKNCNNKFGIVPNVFTCNILAKALCKKNDVEGACKVLDEIPGMGIVANLVTYTTILGG 555
           LL KNC       P+    + L   LCK+  V  A K+ DE    G + + +TY  ++ G
Sbjct: 407 LLKKNCT------PDNAITSTLIHWLCKEGKVWEARKLFDEFE-KGSIPSTLTYNALIAG 459

Query: 554 YCSRGDLVEAKKVFDEILYKGWIPDATTYTVLMDGYLKQGRFIEAVKVMDDMEENGVEPN 375
            C  G+L EA +++D ++ KG +P+A TY +L+ G+ K G   E ++VM++M +NG  PN
Sbjct: 460 MCEGGELPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPN 519

Query: 374 DITFGVMIEGLCKEKKSGEALNLL 303
             T+ +++EGL +    GE  N+L
Sbjct: 520 KATYAILLEGLYELGLEGEVTNVL 543



 Score = 92.4 bits (228), Expect = 2e-16
 Identities = 59/235 (25%), Positives = 118/235 (50%), Gaps = 4/235 (1%)
 Frame = -3

Query: 893  FVMVIRNYGIASRVKFAIRTFLRIKEFGIERSVRSLNTLLNALVQNKRY-DLVHLLFKNC 717
            + +++  Y    R   A++    ++E  +E +  +   ++ A  + K+  ++++LL    
Sbjct: 314  YTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDML 373

Query: 716  NNKFGIVPNVFTCNILAKALCKKNDVEGACKVLDEIPGMGIVANLVTYTTILGGYCSRGD 537
              K+  +P+   C  +   LC++  VE AC++  ++       +    +T++   C  G 
Sbjct: 374  EKKY--IPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKEGK 431

Query: 536  LVEAKKVFDEILYKGWIPDATTYTVLMDGYLKQGRFIEAVKVMDDMEENGVEPNDITFGV 357
            + EA+K+FDE   KG IP   TY  L+ G  + G   EA ++ D+M E G  PN  T+ +
Sbjct: 432  VWEARKLFDEF-EKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYNM 490

Query: 356  MIEGLCKEKKSGEALNLLGDMIEKEYVPNSGLCCKVIDVLCE---DGKVEDACSM 201
            +I+G CK   + E + ++ +M++   +PN      +++ L E   +G+V +  SM
Sbjct: 491  LIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYAILLEGLYELGLEGEVTNVLSM 545



 Score = 66.2 bits (160), Expect = 2e-08
 Identities = 47/205 (22%), Positives = 89/205 (43%)
 Frame = -3

Query: 1001 TYHAMIEKLARVRAFNEMETLMLQLKKSQLKCSENLFVMVIRNYGIASRVKFAIRTFLRI 822
            TY  +IE   + +   E+  L+  + + +   S  L   VI       +V+ A   + ++
Sbjct: 348  TYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKL 407

Query: 821  KEFGIERSVRSLNTLLNALVQNKRYDLVHLLFKNCNNKFGIVPNVFTCNILAKALCKKND 642
             +          +TL++ L +  +      LF       G +P+  T N L   +C+  +
Sbjct: 408  LKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEK--GSIPSTLTYNALIAGMCEGGE 465

Query: 641  VEGACKVLDEIPGMGIVANLVTYTTILGGYCSRGDLVEAKKVFDEILYKGWIPDATTYTV 462
            +  A ++ D +   G V N  TY  ++ G+C  G+  E  +V +E+L  G +P+  TY +
Sbjct: 466  LPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYAI 525

Query: 461  LMDGYLKQGRFIEAVKVMDDMEENG 387
            L++G  + G   E   V+      G
Sbjct: 526  LLEGLYELGLEGEVTNVLSMASSRG 550


>ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223537382|gb|EEF39010.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 544

 Score =  585 bits (1508), Expect = e-165
 Identities = 269/394 (68%), Positives = 330/394 (83%)
 Frame = -3

Query: 1184 SINTNLSTSAPVSKPPIKPWPIRLYPKRLVLMIKRQQNVDLALQIFTYSGHFHPGFSHNY 1005
            S N  L  S  V+ PPIKPWP RLYPKRLV MI RQQN+DLALQIF Y+G + P FSHNY
Sbjct: 37   SPNNPLPESYTVT-PPIKPWPQRLYPKRLVSMITRQQNLDLALQIFEYAGKYQPNFSHNY 95

Query: 1004 DTYHAMIEKLARVRAFNEMETLMLQLKKSQLKCSENLFVMVIRNYGIASRVKFAIRTFLR 825
            DTY ++I KL+R R F  +E L+  L KSQ+KC EN+F+ VIRNYG+A +  FA+RTF+R
Sbjct: 96   DTYDSIIHKLSRARVFGPVELLLSDLHKSQIKCGENIFINVIRNYGLAGKPDFALRTFIR 155

Query: 824  IKEFGIERSVRSLNTLLNALVQNKRYDLVHLLFKNCNNKFGIVPNVFTCNILAKALCKKN 645
            I++F ++RSVRSLNTLLNA VQNKRYDLVH +FKNC +K+G++PNVFTCNIL KALCKKN
Sbjct: 156  IQDFNVQRSVRSLNTLLNAFVQNKRYDLVHAMFKNCRSKYGVLPNVFTCNILIKALCKKN 215

Query: 644  DVEGACKVLDEIPGMGIVANLVTYTTILGGYCSRGDLVEAKKVFDEILYKGWIPDATTYT 465
            DVE A KVLDE+P MG++ N+VTYTTILGGY SRGD+V A KVF E+  +GW+PDATTYT
Sbjct: 216  DVESAVKVLDEMPAMGMIPNVVTYTTILGGYSSRGDMVNANKVFGELFDRGWLPDATTYT 275

Query: 464  VLMDGYLKQGRFIEAVKVMDDMEENGVEPNDITFGVMIEGLCKEKKSGEALNLLGDMIEK 285
            +LM+GY +QGR  +A+K+MDDM ENGVEPN++T+GVM+E  CKEKK+GEA NLL DM+E+
Sbjct: 276  ILMNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLER 335

Query: 284  EYVPNSGLCCKVIDVLCEDGKVEDACSMWRKLLKTNCTPDNAISSTLIYWLCKEGNIWEA 105
            +YVP+S LCCKVIDVLCE GK+E+AC +W+++LK NC PDNAI STLI+WLCKEG +WEA
Sbjct: 336  QYVPSSALCCKVIDVLCEAGKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEA 395

Query: 104  RKLFNEFGKGSIPSVITYNTLIEGMCERGELQEA 3
            RKLF EF +G+IPS++TYNTLI GMCE+GEL EA
Sbjct: 396  RKLFGEFERGAIPSLLTYNTLIAGMCEKGELSEA 429



 Score = 94.4 bits (233), Expect = 6e-17
 Identities = 58/234 (24%), Positives = 114/234 (48%), Gaps = 3/234 (1%)
 Frame = -3

Query: 893 FVMVIRNYGIASRVKFAIRTFLRIKEFGIERSVRSLNTLLNALVQNKRYDLVHLLFKNCN 714
           + +++  Y    R+  AI+    + E G+E +  +   ++ A  + K+      L  +  
Sbjct: 274 YTILMNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDML 333

Query: 713 NKFGIVPNVFTCNILAKALCKKNDVEGACKVLDEIPGMGIVANLVTYTTILGGYCSRGDL 534
            +  +  +   C ++   LC+   +E AC++   +     + +    +T++   C  G +
Sbjct: 334 ERQYVPSSALCCKVI-DVLCEAGKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKV 392

Query: 533 VEAKKVFDEILYKGWIPDATTYTVLMDGYLKQGRFIEAVKVMDDMEENGVEPNDITFGVM 354
            EA+K+F E   +G IP   TY  L+ G  ++G   EA K+ DDM E G +PN  T+ ++
Sbjct: 393 WEARKLFGEF-ERGAIPSLLTYNTLIAGMCEKGELSEAGKLWDDMMEKGYKPNAFTYNML 451

Query: 353 IEGLCKEKKSGEALNLLGDMIEKEYVPNSGLCCKVIDVLCE---DGKVEDACSM 201
           I+G  K   + E + +L +M++   +PN      +I+ LC+   +G+V+   SM
Sbjct: 452 IKGFSKIGNAKEGIRILEEMLDNRCMPNKSTYAILIEELCKMGMEGEVDKVVSM 505



 Score = 90.1 bits (222), Expect = 1e-15
 Identities = 64/267 (23%), Positives = 121/267 (45%), Gaps = 1/267 (0%)
 Frame = -3

Query: 893  FVMVIRNYGIASRVKFAIRTFLRIKEFGIERSVRSLNTLLNALVQNKRY-DLVHLLFKNC 717
            +  ++  Y     +  A + F  + + G      +   L+N   +  R  D + L+    
Sbjct: 239  YTTILGGYSSRGDMVNANKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDMG 298

Query: 716  NNKFGIVPNVFTCNILAKALCKKNDVEGACKVLDEIPGMGIVANLVTYTTILGGYCSRGD 537
             N  G+ PN  T  ++ +A CK+     A  +LD++     V +      ++   C  G 
Sbjct: 299  EN--GVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCEAGK 356

Query: 536  LVEAKKVFDEILYKGWIPDATTYTVLMDGYLKQGRFIEAVKVMDDMEENGVEPNDITFGV 357
            + EA +++  +L K  +PD    + L+    K+G+  EA K+  + E   + P+ +T+  
Sbjct: 357  IEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGEFERGAI-PSLLTYNT 415

Query: 356  MIEGLCKEKKSGEALNLLGDMIEKEYVPNSGLCCKVIDVLCEDGKVEDACSMWRKLLKTN 177
            +I G+C++ +  EA  L  DM+EK Y PN+     +I    + G  ++   +  ++L   
Sbjct: 416  LIAGMCEKGELSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSKIGNAKEGIRILEEMLDNR 475

Query: 176  CTPDNAISSTLIYWLCKEGNIWEARKL 96
            C P+ +  + LI  LCK G   E  K+
Sbjct: 476  CMPNKSTYAILIEELCKMGMEGEVDKV 502



 Score = 67.4 bits (163), Expect = 8e-09
 Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 1/215 (0%)
 Frame = -3

Query: 1022 GFSHNYDTYHAMIEKLARVRAFNEMETLMLQLKKSQLKCSENLFVMVIRNYGIASRVKFA 843
            G   N  TY  M+E   + +   E   L+  + + Q   S  L   VI     A +++ A
Sbjct: 301  GVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCEAGKIEEA 360

Query: 842  IRTFLRIKEFGIERSVRSLNTLLNALVQNKRYDLVHLLFKNCNNKFGIVPNVFTCNILAK 663
               + R+ +         ++TL++ L +  +      LF       G +P++ T N L  
Sbjct: 361  CELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGEFER--GAIPSLLTYNTLIA 418

Query: 662  ALCKKNDVEGACKVLDEIPGMGIVANLVTYTTILGGYCSRGDLVEAKKVFDEILYKGWIP 483
             +C+K ++  A K+ D++   G   N  TY  ++ G+   G+  E  ++ +E+L    +P
Sbjct: 419  GMCEKGELSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSKIGNAKEGIRILEEMLDNRCMP 478

Query: 482  DATTYTVLMDGYLKQGRFIEAVKVMD-DMEENGVE 381
            + +TY +L++   K G   E  KV+   M   GV+
Sbjct: 479  NKSTYAILIEELCKMGMEGEVDKVVSMAMASGGVD 513


>ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At5g16420, mitochondrial; Flags: Precursor
            gi|9759124|dbj|BAB09609.1| salt-inducible protein-like
            [Arabidopsis thaliana] gi|332004907|gb|AED92290.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 535

 Score =  560 bits (1442), Expect = e-157
 Identities = 258/383 (67%), Positives = 319/383 (83%), Gaps = 2/383 (0%)
 Frame = -3

Query: 1145 KPPIKPWPIRLYPKRLVLMIKRQQNVDLALQIFTYSGHFHPGFSHNYDTYHAMIEKLARV 966
            KPPIKPWP RL+PKRLV MI +QQN+DLALQIF Y+G  HPGF+HNYDTYH+++ KL+R 
Sbjct: 37   KPPIKPWPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRA 96

Query: 965  RAFNEMETLMLQLKKSQ--LKCSENLFVMVIRNYGIASRVKFAIRTFLRIKEFGIERSVR 792
            RAF+ +E+LM  L+ S   +KC ENLF+ ++RNYG+A R + ++R FLRI +FG++RSVR
Sbjct: 97   RAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVR 156

Query: 791  SLNTLLNALVQNKRYDLVHLLFKNCNNKFGIVPNVFTCNILAKALCKKNDVEGACKVLDE 612
            SLNTLLN L+QN+R+DLVH +FKN    FGI PN+FTCN+L KALCKKND+E A KVLDE
Sbjct: 157  SLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDE 216

Query: 611  IPGMGIVANLVTYTTILGGYCSRGDLVEAKKVFDEILYKGWIPDATTYTVLMDGYLKQGR 432
            IP MG+V NLVTYTTILGGY +RGD+  AK+V +E+L +GW PDATTYTVLMDGY K GR
Sbjct: 217  IPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGR 276

Query: 431  FIEAVKVMDDMEENGVEPNDITFGVMIEGLCKEKKSGEALNLLGDMIEKEYVPNSGLCCK 252
            F EA  VMDDME+N +EPN++T+GVMI  LCKEKKSGEA N+  +M+E+ ++P+S LCCK
Sbjct: 277  FSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCK 336

Query: 251  VIDVLCEDGKVEDACSMWRKLLKTNCTPDNAISSTLIYWLCKEGNIWEARKLFNEFGKGS 72
            VID LCED KV++AC +WRK+LK NC PDNA+ STLI+WLCKEG + EARKLF+EF KGS
Sbjct: 337  VIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGS 396

Query: 71   IPSVITYNTLIEGMCERGELQEA 3
            IPS++TYNTLI GMCE+GEL EA
Sbjct: 397  IPSLLTYNTLIAGMCEKGELTEA 419



 Score = 99.0 bits (245), Expect = 2e-18
 Identities = 66/240 (27%), Positives = 126/240 (52%)
 Frame = -3

Query: 1022 GFSHNYDTYHAMIEKLARVRAFNEMETLMLQLKKSQLKCSENLFVMVIRNYGIASRVKFA 843
            G+  +  TY  +++   ++  F+E  T+M  ++K++++ +E  + ++IR      +   A
Sbjct: 256  GWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEA 315

Query: 842  IRTFLRIKEFGIERSVRSLNTLLNALVQNKRYDLVHLLFKNCNNKFGIVPNVFTCNILAK 663
               F  + E            +++AL ++ + D    L++    K   +P+    + L  
Sbjct: 316  RNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKML-KNNCMPDNALLSTLIH 374

Query: 662  ALCKKNDVEGACKVLDEIPGMGIVANLVTYTTILGGYCSRGDLVEAKKVFDEILYKGWIP 483
             LCK+  V  A K+ DE    G + +L+TY T++ G C +G+L EA +++D++  +   P
Sbjct: 375  WLCKEGRVTEARKLFDEFE-KGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKP 433

Query: 482  DATTYTVLMDGYLKQGRFIEAVKVMDDMEENGVEPNDITFGVMIEGLCKEKKSGEALNLL 303
            +A TY VL++G  K G   E V+V+++M E G  PN  TF ++ EGL K  K  +A+ ++
Sbjct: 434  NAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIV 493



 Score = 66.2 bits (160), Expect = 2e-08
 Identities = 49/208 (23%), Positives = 92/208 (44%)
 Frame = -3

Query: 1010 NYDTYHAMIEKLARVRAFNEMETLMLQLKKSQLKCSENLFVMVIRNYGIASRVKFAIRTF 831
            N  TY  MI  L + +   E   +  ++ +       +L   VI       +V  A   +
Sbjct: 295  NEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLW 354

Query: 830  LRIKEFGIERSVRSLNTLLNALVQNKRYDLVHLLFKNCNNKFGIVPNVFTCNILAKALCK 651
             ++ +         L+TL++ L +  R      LF       G +P++ T N L   +C+
Sbjct: 355  RKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEK--GSIPSLLTYNTLIAGMCE 412

Query: 650  KNDVEGACKVLDEIPGMGIVANLVTYTTILGGYCSRGDLVEAKKVFDEILYKGWIPDATT 471
            K ++  A ++ D++       N  TY  ++ G    G++ E  +V +E+L  G  P+ TT
Sbjct: 413  KGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTT 472

Query: 470  YTVLMDGYLKQGRFIEAVKVMDDMEENG 387
            + +L +G  K G+  +A+K++     NG
Sbjct: 473  FLILFEGLQKLGKEEDAMKIVSMAVMNG 500