BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00016010
         (371 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    62   5e-15
ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containi...    55   9e-11
ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containi...    55   9e-11
ref|XP_002519063.1| pentatricopeptide repeat-containing protein,...    50   3e-10
gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsu...    51   4e-10

>ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33760-like [Vitis vinifera]
          Length = 561

 Score = 62.0 bits (149), Expect(2) = 5e-15
 Identities = 38/70 (54%), Positives = 45/70 (64%), Gaps = 10/70 (14%)
 Frame = -1

Query: 182 IHYTRQLFLSIPNPDSFLFNSINKASTKFNSPFHAISYYKQM----RHHSNFTFT----- 30
           I YTRQLF SI NPDSFLFN+I KAS+KF     AI +Y++M       SN+TFT     
Sbjct: 67  ILYTRQLFFSITNPDSFLFNAIIKASSKFGFSCDAILFYRRMVADSIPQSNYTFTAVIKA 126

Query: 29  -ADLSALGYG 3
            AD+SAL  G
Sbjct: 127 CADISALRIG 136



 Score = 43.5 bits (101), Expect(2) = 5e-15
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = -3

Query: 315 SAMEATHPPTYKALLQAGSRIKPLKQVHTQIITHSSYQT 199
           + +  +H P Y+ LL AG R+KPL+QVH  +I   SY++
Sbjct: 12  TTLSPSHSPAYQVLLHAGPRLKPLQQVHAHLIVSGSYRS 50


>ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score = 55.5 bits (132), Expect(2) = 9e-11
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 10/70 (14%)
 Frame = -1

Query: 182 IHYTRQLFLSIPNPDSFLFNSINKASTKFNSPFHAISYYKQM----RHHSNFTFT----- 30
           I Y R+LF ++PNPDSFLF+S+ K ++KF      + +Y++M       SN+TFT     
Sbjct: 139 ITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKA 198

Query: 29  -ADLSALGYG 3
            ADLSAL  G
Sbjct: 199 CADLSALRLG 208



 Score = 35.8 bits (81), Expect(2) = 9e-11
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = -3

Query: 300 THPPTYKALLQAGSRIKPLKQVHTQIITHSSYQTPHHKFHSLHTPTLSL 154
           +H P ++ALL++G R++ L+QVH  II         H+  SL T  +SL
Sbjct: 89  SHSPVHEALLRSGPRLRNLQQVHAHIIVSGL-----HRSRSLLTKLISL 132


>ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score = 55.5 bits (132), Expect(2) = 9e-11
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 10/70 (14%)
 Frame = -1

Query: 182 IHYTRQLFLSIPNPDSFLFNSINKASTKFNSPFHAISYYKQM----RHHSNFTFT----- 30
           I Y R+LF ++PNPDSFLF+S+ K ++KF      + +Y++M       SN+TFT     
Sbjct: 75  ITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKA 134

Query: 29  -ADLSALGYG 3
            ADLSAL  G
Sbjct: 135 CADLSALRLG 144



 Score = 35.8 bits (81), Expect(2) = 9e-11
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = -3

Query: 300 THPPTYKALLQAGSRIKPLKQVHTQIITHSSYQTPHHKFHSLHTPTLSL 154
           +H P ++ALL++G R++ L+QVH  II         H+  SL T  +SL
Sbjct: 25  SHSPVHEALLRSGPRLRNLQQVHAHIIVSGL-----HRSRSLLTKLISL 68


>ref|XP_002519063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223541726|gb|EEF43274.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 386

 Score = 50.1 bits (118), Expect(2) = 3e-10
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 11/71 (15%)
 Frame = -1

Query: 182 IHYTRQLFLSIPNPDSFLFNSINKASTKFNS-PFHAISYYKQMR----HHSNFTFT---- 30
           I YTRQ+FLS+ NPDSFLFN++ K+++KF+    +++ +Y  M       S +TFT    
Sbjct: 60  IIYTRQIFLSVANPDSFLFNTLIKSTSKFHKFSIYSLFFYNCMLLSDISPSAYTFTSIVK 119

Query: 29  --ADLSALGYG 3
             ADLS+L  G
Sbjct: 120 SCADLSSLKLG 130



 Score = 39.3 bits (90), Expect(2) = 3e-10
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = -3

Query: 297 HPPTYKALLQAGSRIKPLKQVHTQIITHSS 208
           H P Y  LLQAG R+KPL+QVH  +I   S
Sbjct: 11  HSPAYHFLLQAGPRLKPLQQVHAYVIVSGS 40


>gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
           gi|227463002|gb|ACP39953.1| pentatricopeptide repeat
           protein [Gossypium hirsutum]
          Length = 592

 Score = 51.2 bits (121), Expect(2) = 4e-10
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 10/70 (14%)
 Frame = -1

Query: 182 IHYTRQLFLSIPNPDSFLFNSINKASTKFNSPFHAISYYKQMR----HHSNFTF------ 33
           I YTR+LF SIP PD+FLF+S+   ++KF+ P  ++  Y++M       SN+TF      
Sbjct: 68  ISYTRRLFFSIPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKS 127

Query: 32  TADLSALGYG 3
           +ADL+A   G
Sbjct: 128 SADLTAFSIG 137



 Score = 37.7 bits (86), Expect(2) = 4e-10
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -3

Query: 315 SAMEATHPPTYKALLQAGSRIKPLKQVHTQII 220
           S    TH P Y +++ AG R+KPL+Q+H +II
Sbjct: 12  STTTLTHSPIYHSIILAGPRLKPLQQIHARII 43