BLASTX nr result
ID: Coptis25_contig00016006
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00016006
(457 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004134132.1| PREDICTED: parafibromin-like [Cucumis sativu... 72 4e-24
ref|XP_002282888.1| PREDICTED: parafibromin-like [Vitis vinifera] 67 3e-22
ref|XP_003537641.1| PREDICTED: parafibromin-like [Glycine max] 65 2e-19
ref|XP_002315762.1| PAF1 complex component [Populus trichocarpa]... 68 4e-18
ref|XP_002517109.1| conserved hypothetical protein [Ricinus comm... 60 3e-17
>ref|XP_004134132.1| PREDICTED: parafibromin-like [Cucumis sativus]
gi|449513423|ref|XP_004164322.1| PREDICTED:
parafibromin-like [Cucumis sativus]
Length = 407
Score = 72.0 bits (175), Expect(2) = 4e-24
Identities = 37/49 (75%), Positives = 38/49 (77%), Gaps = 7/49 (14%)
Frame = -1
Query: 127 RLMGSD-------GDDLGYDMAPKPKMNFKGSKIGEGVPIILVPSAFQT 2
RLMGSD GDDLGYD PKPKM+ KG KIGEGVPIILVPSAFQT
Sbjct: 207 RLMGSDDRGLVGYGDDLGYDANPKPKMHLKGGKIGEGVPIILVPSAFQT 255
Score = 64.3 bits (155), Expect(2) = 4e-24
Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 25/121 (20%)
Frame = -3
Query: 413 PDRKPLLEYLQGKVLSNDAIQFVVPQNPN-------PVFREEEKLEVSESV--------- 282
PDRKPLL+YL GKV S+DAI+F+VPQNP +R E+ + V ++
Sbjct: 84 PDRKPLLDYLTGKVSSSDAIEFLVPQNPKFPDLPSVDEYRPEDPVIVGAAMDAVDEDDGF 143
Query: 281 -----ADYVLKIKGMERPLRDR----ECRDCDFHTAXXXXXXXXXXXXXXXXXXXKDGLV 129
DY+ I+ +ERPL+DR EC++ +F+ KDGLV
Sbjct: 144 KDSTNVDYMTMIRAIERPLKDRESLLECKNRNFYNVLVMSTKREEERQRLESQQRKDGLV 203
Query: 128 A 126
A
Sbjct: 204 A 204
>ref|XP_002282888.1| PREDICTED: parafibromin-like [Vitis vinifera]
Length = 413
Score = 66.6 bits (161), Expect(2) = 3e-22
Identities = 49/128 (38%), Positives = 59/128 (46%), Gaps = 31/128 (24%)
Frame = -3
Query: 416 LPDRKPLLEYLQGKVLSNDAIQFVVPQNP----------------NPVF-------REEE 306
LPDRKPLLEYLQGKV S DAI+FVVPQNP +P E+
Sbjct: 83 LPDRKPLLEYLQGKVASTDAIEFVVPQNPKIPDIGVDAVDEYRPEDPTLLAIRDPPGSED 142
Query: 305 KLEVSE----SVADYVLKIKGMERPLRDR----ECRDCDFHTAXXXXXXXXXXXXXXXXX 150
L+ S DY+ I+ ERPL+DR EC+ DF++
Sbjct: 143 ALDNSRVRGFDNVDYISMIRASERPLKDRESLLECKQRDFYSVLMASTRREEERHRLESH 202
Query: 149 XXKDGLVA 126
KDGLVA
Sbjct: 203 QRKDGLVA 210
Score = 63.5 bits (153), Expect(2) = 3e-22
Identities = 34/51 (66%), Positives = 36/51 (70%), Gaps = 9/51 (17%)
Frame = -1
Query: 127 RLMGSD---------GDDLGYDMAPKPKMNFKGSKIGEGVPIILVPSAFQT 2
RLMG+D GD+LGYD PKPKM SKIGEGVPIILVPSAFQT
Sbjct: 213 RLMGADERGLGFWKDGDELGYDGTPKPKMLLNRSKIGEGVPIILVPSAFQT 263
>ref|XP_003537641.1| PREDICTED: parafibromin-like [Glycine max]
Length = 389
Score = 65.5 bits (158), Expect(2) = 2e-19
Identities = 35/49 (71%), Positives = 38/49 (77%), Gaps = 7/49 (14%)
Frame = -1
Query: 127 RLMGSD------GDDLG-YDMAPKPKMNFKGSKIGEGVPIILVPSAFQT 2
RLMGSD DD+G YD PKPKM+ KG+KIGEGVPIILVPSAFQT
Sbjct: 191 RLMGSDDRGLGFSDDMGGYDPTPKPKMHLKGTKIGEGVPIILVPSAFQT 239
Score = 55.1 bits (131), Expect(2) = 2e-19
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Frame = -3
Query: 416 LPDRKPLLEYLQGKVLSNDAIQ---------FVVPQN-PNPVFREEEKLEVSESVADYVL 267
LPDRKPLL+YLQG + S+D+I+ F P++ PNP E L + D++
Sbjct: 83 LPDRKPLLQYLQGTLSSSDSIEYRPHDDPSSFPAPKSTPNPPSLPPEDLNL-----DFIS 137
Query: 266 KIKGMERPLRDR----ECRDCDFHTAXXXXXXXXXXXXXXXXXXXKDGLVA 126
I+ E+PL+DR EC++ DF++ KDGLVA
Sbjct: 138 MIRSAEKPLKDRQSLLECKNRDFYSVLVSATKREEERQRMESHQRKDGLVA 188
>ref|XP_002315762.1| PAF1 complex component [Populus trichocarpa]
gi|222864802|gb|EEF01933.1| PAF1 complex component
[Populus trichocarpa]
Length = 405
Score = 67.8 bits (164), Expect(2) = 4e-18
Identities = 35/49 (71%), Positives = 38/49 (77%), Gaps = 7/49 (14%)
Frame = -1
Query: 127 RLMGSD-------GDDLGYDMAPKPKMNFKGSKIGEGVPIILVPSAFQT 2
RLMG+D GD+LGYD A KPKM+ KG KIGEGVPIILVPSAFQT
Sbjct: 205 RLMGTDERGIGYGGDELGYDSAAKPKMHSKGGKIGEGVPIILVPSAFQT 253
Score = 48.1 bits (113), Expect(2) = 4e-18
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 23/118 (19%)
Frame = -3
Query: 410 DRKPLLEYLQGKVLSNDAIQFVVP---QNPNPVFREEEKLEV----------------SE 288
D KP+ EYL GK+ S D+I F +P QNPN +R ++ + + +E
Sbjct: 85 DWKPVKEYLSGKLSSTDSIVFPLPQESQNPNLNYRPDDPMLLDSRIDDSAAADKVNNGNE 144
Query: 287 SVADYVLKIKGMERPLRDR----ECRDCDFHTAXXXXXXXXXXXXXXXXXXXKDGLVA 126
V ++V I ERPL+DR EC++ DF+ KDGLVA
Sbjct: 145 GVENHVSLIYANERPLKDRESLLECKNRDFYGVLVASTRREEERHKFESQQRKDGLVA 202
>ref|XP_002517109.1| conserved hypothetical protein [Ricinus communis]
gi|223543744|gb|EEF45272.1| conserved hypothetical
protein [Ricinus communis]
Length = 409
Score = 59.7 bits (143), Expect(2) = 3e-17
Identities = 32/48 (66%), Positives = 36/48 (75%), Gaps = 6/48 (12%)
Frame = -1
Query: 127 RLMGSD-----GDDLGYDMAPKPKM-NFKGSKIGEGVPIILVPSAFQT 2
RLMGS+ GD++GYD KPKM + KG K GEGVPIILVPSAFQT
Sbjct: 210 RLMGSEDRGYGGDEMGYDANSKPKMLHLKGGKFGEGVPIILVPSAFQT 257
Score = 53.5 bits (127), Expect(2) = 3e-17
Identities = 43/137 (31%), Positives = 55/137 (40%), Gaps = 29/137 (21%)
Frame = -3
Query: 449 HVQLKQLSIYRLPDRKPLLEYLQGKVLSNDAIQFVVPQNPNPVFREEEKLEVSESVADYV 270
H + L DRKPL +YL GKV S D+I F +PQNPNP + L S +V D
Sbjct: 72 HARAAGLPAITFIDRKPLYDYLTGKVSSTDSIVFPLPQNPNPNLDLDNDLN-SNAVLDST 130
Query: 269 LK-------------------------IKGMERPLRDR----ECRDCDFHTAXXXXXXXX 177
+ I MERP++DR EC+ DF++
Sbjct: 131 INNNSADADVASGGGGNNVKEDNLISIIYSMERPIKDREALLECKTKDFYSVLVASTRRE 190
Query: 176 XXXXXXXXXXXKDGLVA 126
KDGLVA
Sbjct: 191 EERQRIESQQRKDGLVA 207