BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00016003
         (1649 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...   103   1e-38
ref|XP_002532715.1| conserved hypothetical protein [Ricinus comm...    93   8e-33
ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ...    94   1e-32
ref|XP_002526119.1| ubiquitin-protein ligase, putative [Ricinus ...    79   1e-30
ref|NP_001241466.1| uncharacterized protein LOC100815072 [Glycin...    80   2e-28

>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
            gi|222854763|gb|EEE92310.1| f-box family protein [Populus
            trichocarpa]
          Length = 396

 Score =  103 bits (256), Expect(3) = 1e-38
 Identities = 73/217 (33%), Positives = 110/217 (50%), Gaps = 9/217 (4%)
 Frame = +2

Query: 875  EDYEVVEIRFLA-----RFPSEVCVYSLRRNSWRKIQDIPYSIPYITTTGAFTNDALHWT 1039
            +DY++V I          F SEV VYSLR+ SWR+I D+PY + Y    G F N ALHW 
Sbjct: 158  DDYKLVRIAQFGGGGKRSFESEVKVYSLRKQSWRRIGDMPYCVHYPGANGVFANGALHWV 217

Query: 1040 A--FPLRSFNAVIIAYDVGGDSFREVPYPDHLISYSCKIDAAILDDNLCMMWCDKGP-YE 1210
                P  +   +++A D+G + +REV  P++    +  ID  +L   LC +    G   +
Sbjct: 218  VGENPESNVANIVVALDLGVEDYREVLQPEYK-DKNFYIDLGVLRGCLCFLANFLGERVD 276

Query: 1211 LWMMEEYGAIESWTKKFIIRLDLELQYTSPGLVPLCFIKDGATLVLD-SIYDLRLFELGS 1387
            +WMM+EYG  ESWTK F +    E+      L PL + K G  ++++    DL  ++   
Sbjct: 277  VWMMKEYGVKESWTKLFSV-AQYEVIGFLRSLKPLAYSKSGDEVLIEHDNLDLCWYD--- 332

Query: 1388 KILKRWPVSTKDGFKSCCFEATIYTESLVTIE*GLHM 1498
              LKR  V  +       FEA  + ESL+++    H+
Sbjct: 333  --LKRKQVKNRIPGIPYSFEADTFVESLISVSPNRHL 367



 Score = 53.9 bits (128), Expect(3) = 1e-38
 Identities = 25/52 (48%), Positives = 33/52 (63%)
 Frame = +1

Query: 430 LPHEIIELILLRLPVKSILRFRCVSKSWCSLLDDPNFVDRHFRKQLEDKNQL 585
           LP E+I  IL RLP K +L  R VSK WC+L+D PNFV  H +  ++  + L
Sbjct: 4   LPLEMIAEILCRLPAKELLCCRSVSKPWCALIDGPNFVKLHLKHSMDTSSNL 55



 Score = 51.6 bits (122), Expect(3) = 1e-38
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
 Frame = +3

Query: 594 SHICLSKYKLKLIRFGNISF*IDDDPLKTGFFGIKIWGSSNGLVCMTAKQNTIMCLWNPS 773
           SH+    ++  L+    ++    + PL     GIK+ GS NGL+C++   + I  +WNPS
Sbjct: 63  SHVHYMDFEQNLVLNDCVTLKELNHPLMCYNHGIKVLGSVNGLLCISNVVDDI-AVWNPS 121

Query: 774 TRKHKILPTNTLNHINYVQRK-----VYGFGYN 857
           TRKH+++P   +    Y   K     V+GFGY+
Sbjct: 122 TRKHRVVPFLPIELKRYFGTKSCSVYVFGFGYD 154


>ref|XP_002532715.1| conserved hypothetical protein [Ricinus communis]
            gi|223527542|gb|EEF29664.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 395

 Score = 92.8 bits (229), Expect(3) = 8e-33
 Identities = 67/205 (32%), Positives = 106/205 (51%), Gaps = 16/205 (7%)
 Frame = +2

Query: 923  EVCVYSLRRNSWRKIQDIPYSIPYITTT----------GAFTNDALHWTA--FPLRSFNA 1066
            +V VYSL+ +SW++I+ +PY + ++             G F  +ALHW    +P    N 
Sbjct: 178  QVQVYSLKNDSWKRIKGLPYYLRFLYKPFFQVLHRRGYGVFACNALHWVMPHWPELGVNN 237

Query: 1067 VIIAYDVGGDSFREVPYP---DHLISYSCKIDAAILDDNLCMMW-CDKGPYELWMMEEYG 1234
             IIA+D+  ++F++VP P   D+ +++  ++DA +L+  LC M  C     +LW+MEEYG
Sbjct: 238  SIIAFDIVNETFQQVPQPNWSDNQLNF--QVDAGVLEGRLCAMCNCGHECIDLWVMEEYG 295

Query: 1235 AIESWTKKFIIRLDLELQYTSPGLVPLCFIKDGATLVLDSIYDLRLFELGSKILKRWPVS 1414
              ESW K F  RL   +      L PLC+ KD   ++L+ + D +L            V 
Sbjct: 296  VKESWIKLFSFRLSKSMS-NLMFLRPLCYSKDREKMLLE-VNDHKLVWYDWNKTSVRTVK 353

Query: 1415 TKDGFKSCCFEATIYTESLVTIE*G 1489
             K G +S  F A +   SLV ++ G
Sbjct: 354  VKGGPRS--FGAAMCVGSLVPLDDG 376



 Score = 62.4 bits (150), Expect(3) = 8e-33
 Identities = 29/75 (38%), Positives = 48/75 (64%)
 Frame = +1

Query: 430 LPHEIIELILLRLPVKSILRFRCVSKSWCSLLDDPNFVDRHFRKQLEDKNQLDKKAIFVY 609
           +P +I+  +LL LPVK++LRFRC+SK  CSL+D P+F+D H    L+ ++ L      + 
Sbjct: 4   IPDDIVSDVLLLLPVKALLRFRCLSKPLCSLIDSPDFIDHHLSHSLKTRSNL----FLIL 59

Query: 610 PNTSLNSLDLETFHS 654
            + +L +LD ++  S
Sbjct: 60  RDWNLYTLDFDSLSS 74



 Score = 33.9 bits (76), Expect(3) = 8e-33
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
 Frame = +3

Query: 669 PLKTGFFGIKIWGSSNGLVCMTAKQNTIMCLWNPSTRKHKILPTNTL------NHINYVQ 830
           PL+ G  G +  GS NGL+ +   +  +  L+NP+TRK+K +P + +      +   YV 
Sbjct: 86  PLQKGG-GTEAVGSCNGLLALRNSERDL-ALYNPATRKYKRVPVSEIEPPDRNSKTGYV- 142

Query: 831 RKVYGFGYN 857
              YGFG++
Sbjct: 143 --FYGFGFD 149


>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
            gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
            putative [Ricinus communis]
          Length = 389

 Score = 94.0 bits (232), Expect(3) = 1e-32
 Identities = 68/216 (31%), Positives = 111/216 (51%), Gaps = 14/216 (6%)
 Frame = +2

Query: 875  EDYEVVEIRFLA-----RFPSEVCVYSLRRNSWRKIQDIPYSIPYITTTGAFTNDALHW- 1036
            +DY++V I          F SEV V+SLR+NSWR+I D+PY + Y    G + N ALHW 
Sbjct: 151  DDYKLVRIAQFGGVDRKSFESEVKVFSLRKNSWRRIADMPYCVLYPGENGIYANGALHWL 210

Query: 1037 -TAFPLRSFNAVIIAYDVGGDSFREVPYPDHLISYSCKIDAAILDDNLCMM-WCDKGPYE 1210
             +  P  +    I+A D+G + +  VP P+  +  +C +   +L   L ++ +      +
Sbjct: 211  VSQDPDSTVADTIVALDLGVEDYHVVPKPE-FVDMNCNMGVGVLQGCLSLLAYARSERVD 269

Query: 1211 LWMMEEYGAIESWTKKFIIRLDLELQYTSPGLVPLCFIKDGATLVL--DSI----YDLRL 1372
            +W+MEEY   ESW+K F +   LE+      L PL + K G  +++  D++    YDL+ 
Sbjct: 270  VWVMEEYMVKESWSKLFSV-ARLEVIGILRSLKPLAYSKSGNEVLIEHDNVNLFWYDLKR 328

Query: 1373 FELGSKILKRWPVSTKDGFKSCCFEATIYTESLVTI 1480
             E+ +  ++  P++         FEA I   SLV +
Sbjct: 329  KEVVNVWIQGVPIT---------FEAEICVGSLVPL 355



 Score = 48.1 bits (113), Expect(3) = 1e-32
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
 Frame = +3

Query: 663 DDPLKTGFFGIKIWGSSNGLVCMTAKQNTIMCLWNPSTRKHKILPTNTLNHINY-----V 827
           D PL     G+KI GS NGL+C+    + I  LWNPS R H+++P   +    Y      
Sbjct: 79  DHPLMCYNHGVKILGSCNGLLCICNIVDDI-ALWNPSIRAHRVVPYLPVELKRYFGMCSC 137

Query: 828 QRKVYGFGYNPSIQLSKIMKL 890
           +  V+GFGY+ S    K++++
Sbjct: 138 RVSVFGFGYDLSNDDYKLVRI 158



 Score = 46.6 bits (109), Expect(3) = 1e-32
 Identities = 22/49 (44%), Positives = 30/49 (61%)
 Frame = +1

Query: 424 NDLPHEIIELILLRLPVKSILRFRCVSKSWCSLLDDPNFVDRHFRKQLE 570
           ++LP E+I  IL RL  K +L  RCVSK W +L+D P F+  H    +E
Sbjct: 2   SNLPLEMIAEILCRLTAKKLLCCRCVSKRWRTLIDSPTFIYLHLNHSIE 50


>ref|XP_002526119.1| ubiquitin-protein ligase, putative [Ricinus communis]
            gi|223534616|gb|EEF36313.1| ubiquitin-protein ligase,
            putative [Ricinus communis]
          Length = 414

 Score = 78.6 bits (192), Expect(3) = 1e-30
 Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 13/195 (6%)
 Frame = +2

Query: 875  EDYEVVEIR-----FLARFPSEVCVYSLRRNSWRKIQDIPYSIPYITTTGAFTNDALHWT 1039
            +DY+V+ +       L +F ++  VYSL+ NSWRKI  +   I +    G    +ALHW 
Sbjct: 157  DDYKVIRLGQYLDFSLQQFETDTMVYSLKSNSWRKIDGMSCIIGFDQKMGVLVGEALHWL 216

Query: 1040 AFPLRSF--NAVIIAYDVGGDSFREVPYPDHLI-----SYSCKIDAAILDDNLCMMWC-D 1195
            A   R      VI+A ++G + FREVP PD ++     + +  ++  ++++ L +    +
Sbjct: 217  ASRDRILLNPDVIVALNLGVEDFREVPGPDVVVVGANPNQNPSLNLGVVEEWLSVFAIYN 276

Query: 1196 KGPYELWMMEEYGAIESWTKKFIIRLDLELQYTSPGLVPLCFIKDGATLVLDSIYDLRLF 1375
                ++W+M+EYGA +SWT+ F           +P +VP  F+K   TLV     D  L 
Sbjct: 277  NTRLDIWVMKEYGAKDSWTRLFSF---------TPNVVP--FVKCLRTLVFSKNRDEVLL 325

Query: 1376 ELGSKILKRWPVSTK 1420
             L  K L  + +  K
Sbjct: 326  GLQDKNLLWYKIREK 340



 Score = 63.2 bits (152), Expect(3) = 1e-30
 Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
 Frame = +1

Query: 430 LPHEIIELILLRLPVKSILRFRCVSKSWCSLLDDPNFVDRHFRKQLEDKNQLDKKAIFVY 609
           LP E++  IL RLPV  +LRFR +SKSWC+ +DDPNF+  H +K  E  + L       +
Sbjct: 5   LPPELLTEILTRLPVDCLLRFRSISKSWCAKIDDPNFIKTHLKKSRETNSNLTLIFAGSH 64

Query: 610 P----NTSLNSLD 636
           P    N +L+SL+
Sbjct: 65  PDYFYNVNLDSLN 77



 Score = 40.0 bits (92), Expect(3) = 1e-30
 Identities = 21/35 (60%), Positives = 23/35 (65%)
 Frame = +3

Query: 693 IKIWGSSNGLVCMTAKQNTIMCLWNPSTRKHKILP 797
           IKI GS NGL+C       I  L NPSTRKHK+LP
Sbjct: 96  IKIVGSCNGLLCFGNASGRIT-LMNPSTRKHKVLP 129


>ref|NP_001241466.1| uncharacterized protein LOC100815072 [Glycine max]
            gi|255637050|gb|ACU18857.1| unknown [Glycine max]
          Length = 406

 Score = 79.7 bits (195), Expect(3) = 2e-28
 Identities = 66/214 (30%), Positives = 103/214 (48%), Gaps = 13/214 (6%)
 Frame = +2

Query: 875  EDYEVVEIRFLARFPSE------VCVYSLRRNSWRKIQDIPYSIPYITTTGAFTNDALHW 1036
            EDY+VV +      PSE      V VYS+  NSWRKIQD P+       +G F +  L+W
Sbjct: 202  EDYKVVAVFC---DPSEYFIECKVKVYSMATNSWRKIQDFPHGFLPFQNSGKFVSGTLNW 258

Query: 1037 TA---FPLRSFNAVIIAYDVGGDSFREVPYPDHLISYSCKIDAAILDDNLCMMW-CDKGP 1204
             A       SF  VI++ D+  +++REV  PD+           +L   LCM +   K  
Sbjct: 259  AANHSIGPSSF-WVIVSLDLHKETYREVLPPDYEKEDCSTPSLGVLQGCLCMNYDYKKTH 317

Query: 1205 YELWMMEEYGAIESWTKKFIIRL---DLELQYTSPGLVPLCFIKDGATLVLDSIYDLRLF 1375
            + +WMM++YG  ESW K   I       +  Y+ P      +I +   ++L   +DL L+
Sbjct: 318  FVVWMMKDYGVRESWVKLVSIPYVPNPEDFSYSGP-----YYISENGKVLLMFEFDLILY 372

Query: 1376 ELGSKILKRWPVSTKDGFKSCCFEATIYTESLVT 1477
            +  +   K   + +  G+    F+A +Y E+LV+
Sbjct: 373  DPRNNSFKYPKIESGKGW----FDAEVYVETLVS 402



 Score = 58.2 bits (139), Expect(3) = 2e-28
 Identities = 28/57 (49%), Positives = 38/57 (66%)
 Frame = +1

Query: 382 SIETVQTMEKNRANNDLPHEIIELILLRLPVKSILRFRCVSKSWCSLLDDPNFVDRH 552
           S+   Q M ++     LP E++  IL RLPVKS+L+FRCV KSW SL+ DP F+ +H
Sbjct: 33  SVPKQQPMSESLPLPFLPDELVVEILSRLPVKSLLQFRCVCKSWMSLISDPYFMKKH 89



 Score = 36.6 bits (83), Expect(3) = 2e-28
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +3

Query: 636 FGNISF*IDDD---PLKTGFFGIKIWGSSNGLVCMTAKQNTIMCLWNPSTRKHKILP 797
           F N S  + DD   P+K  F    I GS NGL+C   K + ++ LWNPS R  K  P
Sbjct: 124 FNNPSSTVCDDLNYPVKNKFRHDGIVGSCNGLLCFAIKGDCVL-LWNPSIRVSKKSP 179